Wall clock time and date at job start Tue Mar 31 2020 05:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42902 * 113.99640 * 2 1 4 4 C 1.53000 * 109.46622 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46799 * 63.57219 * 4 3 2 6 6 C 1.36713 * 120.00224 * 266.27565 * 5 4 3 7 7 H 1.07999 * 119.99966 * 142.07978 * 6 5 4 8 8 C 1.39124 * 119.99870 * 322.08536 * 6 5 4 9 9 N 1.31324 * 119.99787 * 161.21202 * 8 6 5 10 10 Si 1.86799 * 120.00182 * 341.21561 * 8 6 5 11 11 H 1.48504 * 109.47053 * 95.22475 * 10 8 6 12 12 H 1.48497 * 109.47301 * 215.22465 * 10 8 6 13 13 H 1.48495 * 109.46969 * 335.22782 * 10 8 6 14 14 C 1.34776 * 120.00153 * 86.28409 * 5 4 3 15 15 O 1.21763 * 120.00153 * 359.97438 * 14 5 4 16 16 C 1.46230 * 119.99959 * 179.97438 * 14 5 4 17 17 C 1.34987 * 119.99867 * 179.97438 * 16 14 5 18 18 C 1.47144 * 119.99934 * 179.97438 * 17 16 14 19 19 C 1.39895 * 120.17365 * 0.02562 * 18 17 16 20 20 C 1.37856 * 119.82309 * 179.97438 * 19 18 17 21 21 C 1.38432 * 120.17424 * 359.97438 * 20 19 18 22 22 C 1.38397 * 120.35168 * 359.72479 * 21 20 19 23 23 C 1.50695 * 119.91419 * 180.28259 * 22 21 20 24 24 C 1.37901 * 120.17098 * 0.55474 * 22 21 20 25 25 H 1.09002 * 109.47226 * 299.99763 * 1 2 3 26 26 H 1.08997 * 109.46862 * 60.00133 * 1 2 3 27 27 H 1.08995 * 109.47196 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46953 * 60.00544 * 3 2 1 29 29 H 1.08992 * 109.47010 * 299.99995 * 3 2 1 30 30 H 1.08993 * 109.47787 * 303.57037 * 4 3 2 31 31 H 1.09005 * 109.47145 * 183.56629 * 4 3 2 32 32 H 0.97005 * 119.99865 * 179.97438 * 9 8 6 33 33 H 1.08001 * 120.00029 * 359.97438 * 16 14 5 34 34 H 1.08002 * 119.99584 * 359.97438 * 17 16 14 35 35 H 1.08012 * 120.08782 * 359.97438 * 19 18 17 36 36 H 1.08002 * 119.91101 * 180.02562 * 20 19 18 37 37 H 1.08000 * 119.82294 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.46618 * 270.27990 * 23 22 21 39 39 H 1.08999 * 109.47223 * 30.27216 * 23 22 21 40 40 H 1.08992 * 109.47514 * 150.27477 * 23 22 21 41 41 H 1.07997 * 120.08734 * 179.71638 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9741 0.5331 -1.2359 6 6 4.1682 -0.8199 -1.2640 7 1 3.8911 -1.3871 -2.1403 8 6 4.7226 -1.4661 -0.1637 9 7 4.5780 -2.7637 -0.0227 10 14 5.6726 -0.4880 1.1131 11 1 4.7677 -0.1266 2.2338 12 1 6.7969 -1.3090 1.6298 13 1 6.2082 0.7493 0.4908 14 6 4.1865 1.2674 -2.3459 15 8 4.0134 2.4724 -2.3211 16 6 4.6249 0.6170 -3.5801 17 6 4.8372 1.3525 -4.6919 18 6 5.2789 0.6981 -5.9336 19 6 5.4795 -0.6860 -5.9661 20 6 5.8928 -1.2917 -7.1335 21 6 6.1089 -0.5340 -8.2717 22 6 5.9067 0.8349 -8.2494 23 6 6.1388 1.6493 -9.4960 24 6 5.4989 1.4564 -7.0879 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8525 0.5897 0.8570 31 1 3.9786 2.1785 0.0646 32 1 4.9648 -3.2143 0.7443 33 1 4.7789 -0.4517 -3.6020 34 1 4.6828 2.4212 -4.6700 35 1 5.3109 -1.2786 -5.0789 36 1 6.0477 -2.3602 -7.1603 37 1 6.4323 -1.0144 -9.1834 38 1 7.1764 1.9818 -9.5247 39 1 5.9287 1.0380 -10.3736 40 1 5.4792 2.5170 -9.4912 41 1 5.3459 2.5254 -7.0708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493684240.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:01 Heat of formation + Delta-G solvation = -46.080821 kcal Electronic energy + Delta-G solvation = -22483.080867 eV Core-core repulsion = 19135.238171 eV Total energy + Delta-G solvation = -3347.842696 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.89449 -40.15395 -38.65117 -36.78685 -35.29052 -33.99134 -33.09139 -31.67879 -30.35991 -27.65766 -27.30073 -26.88498 -25.24519 -23.67551 -22.94816 -21.32715 -20.18197 -18.65393 -18.43724 -17.65830 -17.38487 -16.97497 -16.47401 -16.29144 -16.12345 -15.66785 -15.46486 -15.32887 -14.62934 -14.50616 -14.41601 -14.24132 -14.01233 -13.64027 -13.36569 -13.17984 -13.09309 -13.02553 -12.84225 -12.56261 -12.40799 -12.04600 -11.98205 -11.75232 -11.71890 -11.14120 -11.11441 -10.67564 -10.46038 -9.79504 -9.64916 -9.08190 -8.47122 -6.05114 -0.32620 0.48780 1.08105 1.21667 1.33056 1.40303 2.18515 2.39905 2.57546 2.88482 2.97739 3.15163 3.77854 3.88301 4.02739 4.02949 4.11879 4.21676 4.32418 4.34942 4.43354 4.49597 4.51469 4.52369 4.54561 4.63491 4.72849 4.81787 4.84456 4.89715 4.98553 5.05574 5.25572 5.32646 5.37470 5.49352 5.59585 5.69219 5.79621 6.05667 6.10908 6.22800 6.35973 6.96827 7.39361 7.74322 8.66956 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017790 B = 0.004136 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.525286 B = 6768.606168 C = 7297.207873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.060 3.940 4 C 0.089 3.911 5 N -0.451 5.451 6 C -0.323 4.323 7 H 0.078 0.922 8 C 0.034 3.966 9 N -0.892 5.892 10 Si 0.925 3.075 11 H -0.258 1.258 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.494 3.506 15 O -0.626 6.626 16 C -0.181 4.181 17 C -0.050 4.050 18 C -0.075 4.075 19 C -0.130 4.130 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.095 4.095 23 C -0.110 4.110 24 C -0.111 4.111 25 H 0.057 0.943 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.278 0.722 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.142 0.858 37 H 0.151 0.849 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.169 5.524 -11.663 12.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C -0.017 4.017 4 C -0.034 4.034 5 N -0.169 5.169 6 C -0.451 4.451 7 H 0.096 0.904 8 C -0.170 4.170 9 N -0.529 5.529 10 Si 0.751 3.249 11 H -0.184 1.184 12 H -0.209 1.209 13 H -0.192 1.192 14 C 0.287 3.713 15 O -0.516 6.516 16 C -0.201 4.201 17 C -0.070 4.070 18 C -0.076 4.076 19 C -0.148 4.148 20 C -0.139 4.139 21 C -0.134 4.134 22 C -0.095 4.095 23 C -0.166 4.166 24 C -0.129 4.129 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.160 0.840 37 H 0.169 0.831 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.206 5.726 -11.476 12.827 hybrid contribution 0.052 0.039 1.193 1.194 sum 0.258 5.765 -10.283 11.792 Atomic orbital electron populations 1.22874 0.80400 1.03211 1.00465 1.88141 1.20708 1.27538 1.95366 1.22790 0.93070 0.85135 1.00740 1.21938 0.94484 0.98550 0.88397 1.43572 1.57036 1.07268 1.09033 1.18740 1.41421 0.80598 1.04370 0.90402 1.25809 0.96299 0.95911 0.99004 1.69761 1.42228 1.10235 1.30675 0.86170 0.79123 0.79411 0.80164 1.18401 1.20939 1.19207 1.18670 0.80720 0.85905 0.85975 1.90610 1.59409 1.15111 1.86496 1.23023 1.03424 1.01060 0.92570 1.22316 0.94238 0.99516 0.90936 1.19112 1.01234 0.93798 0.93412 1.21610 0.99800 0.94153 0.99218 1.21342 0.99035 1.01102 0.92432 1.21509 0.99520 0.93460 0.98953 1.20223 0.98468 0.94739 0.96028 1.20832 1.02922 0.99431 0.93463 1.21438 0.99609 1.00258 0.91596 0.92410 0.94097 0.89385 0.90164 0.93932 0.91305 0.89037 0.91167 0.85377 0.85477 0.86640 0.84039 0.83149 0.90178 0.89988 0.90894 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -17.19 10.29 -148.98 -1.53 -18.72 16 3 C 0.06 2.39 6.27 71.98 0.45 2.84 16 4 C 0.09 4.02 4.41 86.38 0.38 4.40 16 5 N -0.45 -22.77 2.14 -640.58 -1.37 -24.14 16 6 C -0.32 -17.62 8.55 84.15 0.72 -16.90 16 7 H 0.08 4.55 6.94 -2.91 -0.02 4.53 16 8 C 0.03 1.86 5.34 84.98 0.45 2.32 16 9 N -0.89 -50.64 13.95 21.69 0.30 -50.33 16 10 Si 0.93 42.85 24.81 68.60 1.70 44.56 16 11 H -0.26 -11.21 6.71 99.48 0.67 -10.54 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 13 H -0.27 -12.52 7.10 99.48 0.71 -11.81 16 14 C 0.49 24.42 7.54 86.32 0.65 25.07 16 15 O -0.63 -32.12 15.87 -4.55 -0.07 -32.19 16 16 C -0.18 -7.90 8.67 23.60 0.20 -7.70 16 17 C -0.05 -1.85 9.46 23.86 0.23 -1.63 16 18 C -0.08 -2.42 5.87 -20.15 -0.12 -2.54 16 19 C -0.13 -4.06 9.41 22.58 0.21 -3.85 16 20 C -0.12 -3.02 10.03 22.23 0.22 -2.79 16 21 C -0.12 -2.43 9.69 22.35 0.22 -2.22 16 22 C -0.09 -2.02 5.87 -19.91 -0.12 -2.14 16 23 C -0.11 -1.53 10.01 71.23 0.71 -0.82 16 24 C -0.11 -2.89 9.44 22.58 0.21 -2.67 16 25 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 3.17 3.22 -2.39 -0.01 3.16 16 31 H 0.09 3.91 7.54 -2.38 -0.02 3.90 16 32 H 0.28 14.72 8.31 -92.70 -0.77 13.95 16 33 H 0.13 5.71 4.53 -2.91 -0.01 5.69 16 34 H 0.13 4.68 7.52 -2.91 -0.02 4.66 16 35 H 0.12 3.92 6.17 -2.90 -0.02 3.90 16 36 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 40 H 0.07 0.93 8.08 -2.39 -0.02 0.91 16 41 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -67.47 343.00 5.70 -61.77 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.99 Total: 25.61 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 5.68 Total: -6.55 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -1.07 Total: -74.48 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: -1.61 Total: -50.91 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.70 Total: 44.56 kcal Total: -67.47 5.70 -61.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493684240.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.690 kcal (2) G-P(sol) polarization free energy of solvation -67.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds