Wall clock time and date at job start Tue Mar 31 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42896 * 114.00304 * 2 1 4 4 C 1.52997 * 109.47439 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47410 * 65.00174 * 4 3 2 6 6 C 1.36722 * 119.99650 * 270.00481 * 5 4 3 7 7 H 1.07994 * 120.00176 * 41.94332 * 6 5 4 8 8 C 1.39123 * 119.99465 * 221.94385 * 6 5 4 9 9 N 1.31316 * 120.00388 * 16.56909 * 8 6 5 10 10 Si 1.86801 * 119.99809 * 196.57297 * 8 6 5 11 11 H 1.48503 * 109.47227 * 89.99876 * 10 8 6 12 12 H 1.48500 * 109.47323 * 209.99774 * 10 8 6 13 13 H 1.48499 * 109.47166 * 330.00099 * 10 8 6 14 14 C 1.34771 * 120.00278 * 89.99481 * 5 4 3 15 15 O 1.21759 * 120.00084 * 175.35127 * 14 5 4 16 16 C 1.46233 * 120.00006 * 355.35639 * 14 5 4 17 17 C 1.34979 * 119.99791 * 184.32275 * 16 14 5 18 18 C 1.47149 * 119.99502 * 174.96533 * 17 16 14 19 19 C 1.39874 * 120.17292 * 4.98813 * 18 17 16 20 20 C 1.37877 * 119.82016 * 179.79166 * 19 18 17 21 21 C 1.38414 * 120.17275 * 0.49194 * 20 19 18 22 22 C 1.50708 * 119.82250 * 179.76440 * 21 20 19 23 23 C 1.38410 * 120.35392 * 359.73850 * 21 20 19 24 24 C 1.37876 * 120.17303 * 0.02562 * 23 21 20 25 25 H 1.08999 * 109.47645 * 300.00176 * 1 2 3 26 26 H 1.09004 * 109.46896 * 60.00505 * 1 2 3 27 27 H 1.08997 * 109.47397 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47144 * 59.99857 * 3 2 1 29 29 H 1.09000 * 109.47296 * 300.00174 * 3 2 1 30 30 H 1.08999 * 109.47354 * 305.00172 * 4 3 2 31 31 H 1.09002 * 109.47629 * 185.00057 * 4 3 2 32 32 H 0.96999 * 120.00333 * 184.89753 * 9 8 6 33 33 H 1.07999 * 119.99425 * 4.32743 * 16 14 5 34 34 H 1.07997 * 120.00268 * 354.68819 * 17 16 14 35 35 H 1.07998 * 120.08779 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.91289 * 180.22619 * 20 19 18 37 37 H 1.08997 * 109.46795 * 269.97776 * 22 21 20 38 38 H 1.09006 * 109.46796 * 29.97321 * 22 21 20 39 39 H 1.08999 * 109.46788 * 149.97159 * 22 21 20 40 40 H 1.07997 * 119.91385 * 180.02562 * 23 21 20 41 41 H 1.08006 * 120.08980 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0976 -0.7954 -1.3343 7 1 3.3445 -1.4324 -0.8947 8 6 5.1908 -1.3577 -1.9855 9 7 6.2550 -0.6287 -2.2314 10 14 5.1449 -3.1500 -2.5101 11 1 4.5902 -3.2495 -3.8841 12 1 6.5213 -3.7070 -2.4905 13 1 4.2865 -3.9182 -1.5730 14 6 4.2633 1.3328 -2.3200 15 8 4.7106 0.8254 -3.3324 16 6 4.0373 2.7765 -2.2640 17 6 4.2413 3.5346 -3.3620 18 6 3.9087 4.9678 -3.3386 19 6 3.4795 5.5706 -2.1517 20 6 3.1739 6.9150 -2.1370 21 6 3.2810 7.6655 -3.2951 22 6 2.9398 9.1332 -3.2713 23 6 3.7003 7.0753 -4.4747 24 6 4.0143 5.7331 -4.5047 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8507 0.5684 0.8427 31 1 3.9785 2.1765 0.0902 32 1 6.9881 -0.9992 -2.7474 33 1 3.7071 3.2360 -1.3441 34 1 4.6529 3.0902 -4.2562 35 1 3.3915 4.9854 -1.2483 36 1 2.8459 7.3828 -1.2205 37 1 1.8823 9.2641 -3.5007 38 1 3.1498 9.5391 -2.2817 39 1 3.5405 9.6579 -4.0143 40 1 3.7818 7.6676 -5.3741 41 1 4.3410 5.2738 -5.4260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493729972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:04 Heat of formation + Delta-G solvation = -23.887198 kcal Electronic energy + Delta-G solvation = -22560.492450 eV Core-core repulsion = 19213.612141 eV Total energy + Delta-G solvation = -3346.880309 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.26102 -38.42815 -37.10216 -34.47098 -33.79662 -32.07187 -31.00064 -30.46223 -28.80612 -26.88448 -25.91597 -24.63751 -22.86813 -22.52640 -21.76736 -20.27553 -18.23707 -17.09161 -16.30270 -15.88320 -15.74607 -15.20969 -14.87384 -14.78342 -14.70503 -14.17215 -13.83649 -13.79782 -13.35778 -13.06976 -12.84866 -12.62882 -12.32138 -12.20877 -12.12517 -11.50192 -11.37767 -11.31514 -11.19712 -10.96365 -10.81154 -10.70058 -10.52866 -10.42573 -10.11149 -9.56821 -9.22009 -8.86349 -8.72852 -7.97488 -7.67694 -7.01422 -5.97984 -3.72753 0.98863 1.52081 2.60252 3.39921 3.46468 3.47395 4.00237 4.25512 4.38368 4.81925 4.85689 4.92587 4.94373 5.07103 5.22596 5.26669 5.38936 5.47157 5.50725 5.52367 5.59227 5.63271 5.69617 5.75459 5.76870 5.81512 5.89872 5.95700 6.08355 6.12420 6.16718 6.35481 6.46838 6.57074 6.62279 6.64162 7.07050 7.12885 7.18182 7.64595 7.78419 8.40054 9.12748 9.28792 9.74539 10.40447 11.05569 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017200 B = 0.004245 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.559763 B = 6594.409125 C = 7810.083746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.047 3.953 4 C 0.105 3.895 5 N -0.434 5.434 6 C -0.322 4.322 7 H 0.090 0.910 8 C 0.058 3.942 9 N -0.816 5.816 10 Si 0.909 3.091 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.476 3.524 15 O -0.530 6.530 16 C -0.152 4.152 17 C -0.099 4.099 18 C -0.043 4.043 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.102 4.102 22 C -0.111 4.111 23 C -0.120 4.120 24 C -0.109 4.109 25 H 0.031 0.969 26 H 0.035 0.965 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.263 0.737 33 H 0.109 0.891 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.119 0.881 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.217 14.744 2.420 17.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C -0.031 4.031 4 C -0.020 4.020 5 N -0.154 5.154 6 C -0.450 4.450 7 H 0.107 0.893 8 C -0.152 4.152 9 N -0.450 5.450 10 Si 0.736 3.264 11 H -0.206 1.206 12 H -0.215 1.215 13 H -0.197 1.197 14 C 0.266 3.734 15 O -0.409 6.409 16 C -0.173 4.173 17 C -0.120 4.120 18 C -0.043 4.043 19 C -0.133 4.133 20 C -0.137 4.137 21 C -0.102 4.102 22 C -0.168 4.168 23 C -0.138 4.138 24 C -0.127 4.127 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.137 0.863 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.649 14.255 1.910 16.289 hybrid contribution -0.220 -0.493 -0.190 0.572 sum -7.868 13.761 1.720 15.945 Atomic orbital electron populations 1.22667 0.82754 1.02126 0.99003 1.88090 1.18036 1.27372 1.95074 1.23175 0.96016 0.84989 0.98942 1.21587 0.90835 0.98517 0.91091 1.43112 1.59394 1.06291 1.06629 1.19265 1.05546 0.80347 1.39826 0.89284 1.25275 0.93719 0.98544 0.97670 1.69890 1.04539 1.37494 1.33123 0.86242 0.76976 0.83816 0.79343 1.20574 1.21451 1.19739 1.17826 0.85462 0.85505 0.84575 1.90653 1.44879 1.74215 1.31133 1.23554 1.00211 0.95848 0.97731 1.22047 0.99584 0.90386 1.00001 1.19202 0.98098 0.93668 0.93342 1.21396 0.99364 0.94729 0.97799 1.20902 1.01153 0.93969 0.97651 1.19935 1.00508 0.96045 0.93689 1.20759 1.01539 0.92043 1.02428 1.20904 1.00594 0.94907 0.97383 1.21342 0.99826 0.93721 0.97817 0.94996 0.94672 0.90169 0.93979 0.93701 0.90222 0.90979 0.92706 0.87313 0.85301 0.85787 0.86302 0.91493 0.91788 0.91812 0.86320 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -6.97 9.71 -35.23 -0.34 -7.31 16 3 C 0.05 0.80 6.28 37.16 0.23 1.03 16 4 C 0.10 2.05 5.44 -4.04 -0.02 2.03 16 5 N -0.43 -11.06 2.49 -116.47 -0.29 -11.35 16 6 C -0.32 -9.08 8.92 -15.04 -0.13 -9.22 16 7 H 0.09 2.48 7.29 -52.49 -0.38 2.10 16 8 C 0.06 1.69 4.45 -17.44 -0.08 1.61 16 9 N -0.82 -24.83 11.20 55.50 0.62 -24.20 16 10 Si 0.91 22.47 29.59 -169.99 -5.03 17.44 16 11 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.48 12.46 6.97 -13.05 -0.09 12.36 16 15 O -0.53 -16.15 13.43 5.14 0.07 -16.08 16 16 C -0.15 -3.11 8.49 -37.53 -0.32 -3.43 16 17 C -0.10 -1.89 9.46 -37.12 -0.35 -2.25 16 18 C -0.04 -0.68 5.87 -105.06 -0.62 -1.30 16 19 C -0.11 -1.61 9.41 -39.10 -0.37 -1.98 16 20 C -0.12 -1.43 9.68 -39.65 -0.38 -1.82 16 21 C -0.10 -1.17 5.89 -104.49 -0.62 -1.79 16 22 C -0.11 -0.92 10.00 36.01 0.36 -0.56 16 23 C -0.12 -1.45 9.68 -39.65 -0.38 -1.83 16 24 C -0.11 -1.53 9.80 -39.10 -0.38 -1.91 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.77 8.03 -51.93 -0.42 0.35 16 30 H 0.08 1.57 8.04 -51.93 -0.42 1.16 16 31 H 0.07 1.22 6.25 -51.93 -0.32 0.90 16 32 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.11 1.86 4.31 -52.49 -0.23 1.63 16 34 H 0.13 2.66 7.53 -52.49 -0.40 2.26 16 35 H 0.12 1.60 6.19 -52.49 -0.32 1.28 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 39 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 40 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 346.09 15.07 5.22 5.22 Total: -1.00 -34.84 346.09 -7.64 -42.48 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.84 Total: 1.28 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -2.04 Total: -7.48 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.33 Total: -35.55 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.27 Total: -23.39 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.84 -7.64 -42.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493729972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.596 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds