Wall clock time and date at job start Tue Mar 31 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42896 * 114.00304 * 2 1 4 4 C 1.52997 * 109.47439 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47410 * 65.00174 * 4 3 2 6 6 C 1.36722 * 119.99650 * 270.00481 * 5 4 3 7 7 H 1.07994 * 120.00176 * 41.94332 * 6 5 4 8 8 C 1.39123 * 119.99465 * 221.94385 * 6 5 4 9 9 N 1.31316 * 120.00388 * 16.56909 * 8 6 5 10 10 Si 1.86801 * 119.99809 * 196.57297 * 8 6 5 11 11 H 1.48503 * 109.47227 * 89.99876 * 10 8 6 12 12 H 1.48500 * 109.47323 * 209.99774 * 10 8 6 13 13 H 1.48499 * 109.47166 * 330.00099 * 10 8 6 14 14 C 1.34771 * 120.00278 * 89.99481 * 5 4 3 15 15 O 1.21759 * 120.00084 * 175.35127 * 14 5 4 16 16 C 1.46233 * 120.00006 * 355.35639 * 14 5 4 17 17 C 1.34979 * 119.99791 * 184.32275 * 16 14 5 18 18 C 1.47149 * 119.99502 * 174.96533 * 17 16 14 19 19 C 1.39874 * 120.17292 * 4.98813 * 18 17 16 20 20 C 1.37877 * 119.82016 * 179.79166 * 19 18 17 21 21 C 1.38414 * 120.17275 * 0.49194 * 20 19 18 22 22 C 1.50708 * 119.82250 * 179.76440 * 21 20 19 23 23 C 1.38410 * 120.35392 * 359.73850 * 21 20 19 24 24 C 1.37876 * 120.17303 * 0.02562 * 23 21 20 25 25 H 1.08999 * 109.47645 * 300.00176 * 1 2 3 26 26 H 1.09004 * 109.46896 * 60.00505 * 1 2 3 27 27 H 1.08997 * 109.47397 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47144 * 59.99857 * 3 2 1 29 29 H 1.09000 * 109.47296 * 300.00174 * 3 2 1 30 30 H 1.08999 * 109.47354 * 305.00172 * 4 3 2 31 31 H 1.09002 * 109.47629 * 185.00057 * 4 3 2 32 32 H 0.96999 * 120.00333 * 184.89753 * 9 8 6 33 33 H 1.07999 * 119.99425 * 4.32743 * 16 14 5 34 34 H 1.07997 * 120.00268 * 354.68819 * 17 16 14 35 35 H 1.07998 * 120.08779 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.91289 * 180.22619 * 20 19 18 37 37 H 1.08997 * 109.46795 * 269.97776 * 22 21 20 38 38 H 1.09006 * 109.46796 * 29.97321 * 22 21 20 39 39 H 1.08999 * 109.46788 * 149.97159 * 22 21 20 40 40 H 1.07997 * 119.91385 * 180.02562 * 23 21 20 41 41 H 1.08006 * 120.08980 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0976 -0.7954 -1.3343 7 1 3.3445 -1.4324 -0.8947 8 6 5.1908 -1.3577 -1.9855 9 7 6.2550 -0.6287 -2.2314 10 14 5.1449 -3.1500 -2.5101 11 1 4.5902 -3.2495 -3.8841 12 1 6.5213 -3.7070 -2.4905 13 1 4.2865 -3.9182 -1.5730 14 6 4.2633 1.3328 -2.3200 15 8 4.7106 0.8254 -3.3324 16 6 4.0373 2.7765 -2.2640 17 6 4.2413 3.5346 -3.3620 18 6 3.9087 4.9678 -3.3386 19 6 3.4795 5.5706 -2.1517 20 6 3.1739 6.9150 -2.1370 21 6 3.2810 7.6655 -3.2951 22 6 2.9398 9.1332 -3.2713 23 6 3.7003 7.0753 -4.4747 24 6 4.0143 5.7331 -4.5047 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8507 0.5684 0.8427 31 1 3.9785 2.1765 0.0902 32 1 6.9881 -0.9992 -2.7474 33 1 3.7071 3.2360 -1.3441 34 1 4.6529 3.0902 -4.2562 35 1 3.3915 4.9854 -1.2483 36 1 2.8459 7.3828 -1.2205 37 1 1.8823 9.2641 -3.5007 38 1 3.1498 9.5391 -2.2817 39 1 3.5405 9.6579 -4.0143 40 1 3.7818 7.6676 -5.3741 41 1 4.3410 5.2738 -5.4260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493729972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:03 Heat of formation + Delta-G solvation = -45.540101 kcal Electronic energy + Delta-G solvation = -22561.431390 eV Core-core repulsion = 19213.612141 eV Total energy + Delta-G solvation = -3347.819249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.53464 -40.00156 -38.54842 -36.12875 -35.33071 -33.98528 -32.11793 -31.63900 -30.39640 -28.16081 -27.15200 -26.34920 -24.23424 -23.73374 -23.11138 -21.65574 -19.90648 -18.77434 -17.97161 -17.28207 -17.10354 -16.50956 -16.38929 -16.08940 -15.97954 -15.71653 -15.52334 -14.84462 -14.56855 -14.40779 -14.29797 -14.04071 -13.63804 -13.28434 -13.18296 -12.99251 -12.93123 -12.80497 -12.67974 -12.61071 -12.45937 -12.09634 -12.05881 -11.93617 -11.70676 -10.92597 -10.80623 -10.46167 -10.02109 -9.85913 -9.08735 -8.92817 -8.10720 -5.90668 -0.24519 0.52475 1.23634 1.38950 1.45543 1.51573 2.38820 2.82170 3.00284 3.09229 3.18416 3.38839 3.83652 3.86923 4.07047 4.10535 4.23310 4.27960 4.34284 4.44022 4.50535 4.55419 4.57858 4.60187 4.66168 4.74004 4.85991 4.87967 4.90389 4.96898 5.07141 5.14254 5.27423 5.32953 5.40650 5.58124 5.66195 5.70261 5.80775 6.11539 6.30473 6.43039 7.06268 7.27920 7.73737 8.41952 8.92216 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017200 B = 0.004245 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.559763 B = 6594.409125 C = 7810.083746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.409 6.409 3 C 0.054 3.946 4 C 0.099 3.901 5 N -0.450 5.450 6 C -0.339 4.339 7 H 0.085 0.915 8 C 0.007 3.993 9 N -0.859 5.859 10 Si 0.967 3.033 11 H -0.292 1.292 12 H -0.282 1.282 13 H -0.254 1.254 14 C 0.468 3.532 15 O -0.590 6.590 16 C -0.180 4.180 17 C -0.067 4.067 18 C -0.081 4.081 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.089 4.089 22 C -0.112 4.112 23 C -0.126 4.126 24 C -0.114 4.114 25 H 0.061 0.939 26 H 0.036 0.964 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.255 0.745 33 H 0.146 0.854 34 H 0.101 0.899 35 H 0.134 0.866 36 H 0.149 0.851 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.145 0.855 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.146 18.090 3.580 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.024 4.024 4 C -0.024 4.024 5 N -0.169 5.169 6 C -0.467 4.467 7 H 0.102 0.898 8 C -0.199 4.199 9 N -0.495 5.495 10 Si 0.793 3.207 11 H -0.219 1.219 12 H -0.208 1.208 13 H -0.177 1.177 14 C 0.260 3.740 15 O -0.473 6.473 16 C -0.200 4.200 17 C -0.087 4.087 18 C -0.081 4.081 19 C -0.131 4.131 20 C -0.141 4.141 21 C -0.089 4.089 22 C -0.168 4.168 23 C -0.144 4.144 24 C -0.132 4.132 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.065 0.935 33 H 0.163 0.837 34 H 0.119 0.881 35 H 0.152 0.848 36 H 0.167 0.833 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.163 0.837 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.613 17.615 3.122 20.308 hybrid contribution 0.261 -1.201 -0.618 1.376 sum -9.352 16.414 2.504 19.056 Atomic orbital electron populations 1.22854 0.80434 1.03161 1.00455 1.88025 1.20713 1.28649 1.95417 1.23094 0.93681 0.84780 1.00823 1.21843 0.93225 0.99192 0.88157 1.43308 1.59438 1.05701 1.08500 1.19400 1.05166 0.82096 1.40072 0.89780 1.26104 0.93535 1.02342 0.97884 1.70003 1.05256 1.39274 1.34929 0.85342 0.77352 0.79689 0.78358 1.21869 1.20774 1.17749 1.18694 0.83664 0.87804 0.83885 1.90599 1.47432 1.75954 1.33362 1.23257 1.03984 0.92774 1.00004 1.22148 0.96049 0.92401 0.98145 1.19084 1.01841 0.91840 0.95357 1.21584 0.98397 0.95865 0.97220 1.21274 1.00549 0.93121 0.99204 1.20459 0.97617 0.97826 0.93013 1.20858 1.02573 0.89519 1.03852 1.21234 1.00093 0.94109 0.98967 1.21525 0.99487 0.94804 0.97397 0.92088 0.94505 0.89530 0.89493 0.94043 0.90940 0.88334 0.93537 0.83651 0.88073 0.84847 0.83294 0.90109 0.90354 0.90587 0.83714 0.85657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -15.17 9.71 -148.98 -1.45 -16.62 16 3 C 0.05 1.73 6.28 71.98 0.45 2.18 16 4 C 0.10 3.86 5.44 86.38 0.47 4.33 16 5 N -0.45 -23.64 2.49 -640.58 -1.60 -25.23 16 6 C -0.34 -19.85 8.92 84.14 0.75 -19.10 16 7 H 0.08 4.87 7.29 -2.91 -0.02 4.84 16 8 C 0.01 0.44 4.45 84.98 0.38 0.82 16 9 N -0.86 -55.04 11.20 21.69 0.24 -54.80 16 10 Si 0.97 48.11 29.59 68.60 2.03 50.13 16 11 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 12 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 13 H -0.25 -11.66 7.11 99.48 0.71 -10.95 16 14 C 0.47 25.53 6.97 86.32 0.60 26.13 16 15 O -0.59 -38.22 13.43 -4.54 -0.06 -38.28 16 16 C -0.18 -7.46 8.49 23.60 0.20 -7.26 16 17 C -0.07 -2.60 9.46 23.86 0.23 -2.38 16 18 C -0.08 -2.49 5.87 -20.15 -0.12 -2.61 16 19 C -0.11 -2.86 9.41 22.58 0.21 -2.65 16 20 C -0.12 -2.48 9.68 22.23 0.22 -2.26 16 21 C -0.09 -1.67 5.89 -19.78 -0.12 -1.79 16 22 C -0.11 -1.29 10.00 71.24 0.71 -0.57 16 23 C -0.13 -2.65 9.68 22.22 0.22 -2.43 16 24 C -0.11 -3.04 9.80 22.58 0.22 -2.82 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.04 1.36 8.03 -2.39 -0.02 1.34 16 30 H 0.07 2.88 8.04 -2.39 -0.02 2.86 16 31 H 0.10 3.21 6.25 -2.39 -0.01 3.20 16 32 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 33 H 0.15 4.79 4.31 -2.91 -0.01 4.78 16 34 H 0.10 4.46 7.53 -2.91 -0.02 4.44 16 35 H 0.13 3.04 6.19 -2.91 -0.02 3.02 16 36 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 0.73 8.08 -2.38 -0.02 0.71 16 39 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 40 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 41 H 0.13 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -81.61 346.09 5.85 -75.75 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 1.02 Total: 17.49 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 5.67 Total: -8.44 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -1.35 Total: -80.03 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: -1.51 Total: -54.90 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.13 kcal Total: -81.61 5.85 -75.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493729972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.212 kcal (2) G-P(sol) polarization free energy of solvation -81.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds