Wall clock time and date at job start Tue Mar 31 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42890 * 114.00374 * 2 1 4 4 C 1.52997 * 109.47566 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46784 * 65.00016 * 4 3 2 6 6 C 1.36721 * 120.00195 * 270.00105 * 5 4 3 7 7 H 1.07993 * 119.99879 * 137.49232 * 6 5 4 8 8 C 1.39128 * 119.99699 * 317.49901 * 6 5 4 9 9 N 1.31323 * 120.00156 * 351.67812 * 8 6 5 10 10 Si 1.86800 * 119.99864 * 171.68495 * 8 6 5 11 11 H 1.48506 * 109.46921 * 89.99370 * 10 8 6 12 12 H 1.48495 * 109.47080 * 209.99714 * 10 8 6 13 13 H 1.48497 * 109.47002 * 329.99523 * 10 8 6 14 14 C 1.34777 * 120.00216 * 90.00145 * 5 4 3 15 15 O 1.21758 * 119.99684 * 354.53861 * 14 5 4 16 16 C 1.46233 * 119.99959 * 174.80759 * 14 5 4 17 17 C 1.34976 * 119.99759 * 173.79510 * 16 14 5 18 18 C 1.47149 * 119.99865 * 348.72533 * 17 16 14 19 19 C 1.39870 * 120.17481 * 313.20815 * 18 17 16 20 20 C 1.37880 * 119.81988 * 179.74390 * 19 18 17 21 21 C 1.38412 * 120.17628 * 0.55732 * 20 19 18 22 22 C 1.50697 * 119.82432 * 179.72008 * 21 20 19 23 23 C 1.38415 * 120.35005 * 359.69805 * 21 20 19 24 24 C 1.37875 * 120.17461 * 0.02562 * 23 21 20 25 25 H 1.09008 * 109.46701 * 300.00000 * 1 2 3 26 26 H 1.08997 * 109.46873 * 59.99419 * 1 2 3 27 27 H 1.09000 * 109.47292 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47392 * 59.99935 * 3 2 1 29 29 H 1.09009 * 109.47179 * 300.00198 * 3 2 1 30 30 H 1.08997 * 109.46975 * 305.00472 * 4 3 2 31 31 H 1.08992 * 109.47904 * 184.99715 * 4 3 2 32 32 H 0.96995 * 120.00414 * 185.01302 * 9 8 6 33 33 H 1.07995 * 120.00016 * 353.79116 * 16 14 5 34 34 H 1.08000 * 120.00255 * 168.73623 * 17 16 14 35 35 H 1.08005 * 120.08983 * 0.02704 * 19 18 17 36 36 H 1.08010 * 119.91045 * 180.27529 * 20 19 18 37 37 H 1.09007 * 109.47222 * 269.97620 * 22 21 20 38 38 H 1.08998 * 109.47191 * 29.97369 * 22 21 20 39 39 H 1.08997 * 109.47122 * 149.98260 * 22 21 20 40 40 H 1.07999 * 119.91123 * 179.97438 * 23 21 20 41 41 H 1.08003 * 120.09207 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9756 0.5643 -1.2528 6 6 4.0965 -0.7950 -1.3369 7 1 3.7472 -1.3147 -2.2167 8 6 4.6694 -1.5085 -0.2889 9 7 5.2408 -0.8692 0.7058 10 14 4.6260 -3.3760 -0.2968 11 1 5.8354 -3.8963 -0.9838 12 1 4.5969 -3.8763 1.1010 13 1 3.4113 -3.8398 -1.0140 14 6 4.2614 1.3336 -2.3219 15 8 4.0594 2.5336 -2.2799 16 6 4.8086 0.7262 -3.5344 17 6 4.9775 1.4729 -4.6461 18 6 4.3895 2.8195 -4.7242 19 6 3.0609 3.0299 -4.3411 20 6 2.5189 4.2957 -4.4123 21 6 3.2825 5.3546 -4.8722 22 6 2.6802 6.7336 -4.9527 23 6 4.5965 5.1536 -5.2582 24 6 5.1547 3.8949 -5.1876 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8515 0.5680 0.8409 31 1 3.9787 2.1763 0.0889 32 1 5.7035 -1.3651 1.3991 33 1 5.0776 -0.3197 -3.5404 34 1 5.5440 1.0819 -5.4783 35 1 2.4624 2.2038 -3.9862 36 1 1.4944 4.4606 -4.1126 37 1 2.2235 6.8741 -5.9325 38 1 1.9208 6.8441 -4.1787 39 1 3.4607 7.4801 -4.8054 40 1 5.1857 5.9848 -5.6164 41 1 6.1800 3.7395 -5.4896 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493729973.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:06 Heat of formation + Delta-G solvation = -26.139377 kcal Electronic energy + Delta-G solvation = -23281.791296 eV Core-core repulsion = 19934.813326 eV Total energy + Delta-G solvation = -3346.977971 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.20150 -38.21593 -36.91154 -34.87563 -33.47607 -31.56094 -30.86422 -30.33789 -29.13574 -26.32375 -25.76686 -24.68605 -22.99294 -22.07400 -21.19527 -19.96861 -18.70878 -16.92395 -16.35605 -15.49166 -15.40878 -15.10590 -14.81526 -14.58742 -14.36391 -14.30188 -13.75719 -13.47637 -13.21727 -13.05300 -12.81761 -12.53844 -12.03384 -11.92879 -11.86271 -11.58576 -11.31885 -11.15199 -11.05099 -10.94218 -10.73025 -10.53593 -10.48908 -10.31653 -10.04469 -9.18442 -8.99244 -8.94461 -8.51590 -8.21061 -7.38420 -7.29037 -6.30979 -4.05442 1.49109 2.07085 2.54823 3.16730 3.23718 3.27716 4.11023 4.39299 4.48316 4.57811 4.87491 5.12202 5.24752 5.27865 5.44735 5.54589 5.64153 5.68410 5.74450 5.76646 5.89631 5.98726 6.00706 6.01913 6.08347 6.15560 6.25910 6.39044 6.41697 6.56749 6.64598 6.73861 6.85065 7.00878 7.11022 7.17798 7.31238 7.35215 7.54327 7.61828 7.86577 8.06078 8.41380 9.12047 9.55089 9.98120 10.68983 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018714 B = 0.005065 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.838774 B = 5527.289799 C = 6429.195893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.056 3.944 4 C 0.107 3.893 5 N -0.416 5.416 6 C -0.314 4.314 7 H 0.085 0.915 8 C 0.049 3.951 9 N -0.868 5.868 10 Si 0.920 3.080 11 H -0.278 1.278 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.480 3.520 15 O -0.594 6.594 16 C -0.140 4.140 17 C -0.104 4.104 18 C -0.035 4.035 19 C -0.031 4.031 20 C -0.132 4.132 21 C -0.096 4.096 22 C -0.108 4.108 23 C -0.136 4.136 24 C -0.111 4.111 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.077 0.923 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.270 0.730 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.561 5.325 -6.872 9.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C -0.022 4.022 4 C -0.017 4.017 5 N -0.131 5.131 6 C -0.442 4.442 7 H 0.103 0.897 8 C -0.157 4.157 9 N -0.505 5.505 10 Si 0.747 3.253 11 H -0.204 1.204 12 H -0.208 1.208 13 H -0.193 1.193 14 C 0.272 3.728 15 O -0.482 6.482 16 C -0.161 4.161 17 C -0.125 4.125 18 C -0.035 4.035 19 C -0.050 4.050 20 C -0.150 4.150 21 C -0.096 4.096 22 C -0.165 4.165 23 C -0.155 4.155 24 C -0.129 4.129 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.140 0.860 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.149 0.851 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.128 0.872 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.524 5.658 -6.543 9.762 hybrid contribution -0.137 -0.906 0.330 0.974 sum -4.661 4.753 -6.213 9.106 Atomic orbital electron populations 1.22637 0.83623 1.01648 0.98732 1.88153 1.17166 1.27748 1.94997 1.22991 0.96642 0.84200 0.98359 1.21632 0.89165 0.99098 0.91794 1.43278 1.54328 1.06127 1.09406 1.19311 1.39069 0.81076 1.04759 0.89704 1.25468 0.94534 1.00189 0.95501 1.69605 1.32437 1.36337 1.12100 0.86030 0.78710 0.82821 0.77736 1.20407 1.20816 1.19267 1.18519 0.82132 0.86299 0.85848 1.90728 1.58759 1.14737 1.83969 1.23307 0.99983 0.99866 0.92941 1.22095 0.99407 0.93207 0.97757 1.18820 0.93618 0.93143 0.97882 1.20991 0.94229 0.96537 0.93197 1.20704 0.99292 0.92779 1.02273 1.19772 0.94399 0.95137 1.00290 1.20719 1.00514 0.93728 1.01519 1.20662 0.94881 0.96700 1.03219 1.21076 0.98799 0.92517 1.00544 0.95255 0.95098 0.90490 0.94530 0.94342 0.85982 0.91357 0.91901 0.85118 0.86117 0.87242 0.87252 0.91950 0.92068 0.92147 0.87167 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.83 10.17 -35.23 -0.36 -8.19 16 3 C 0.06 1.18 6.28 37.16 0.23 1.41 16 4 C 0.11 2.57 5.37 -4.04 -0.02 2.55 16 5 N -0.42 -10.42 2.48 -116.46 -0.29 -10.70 16 6 C -0.31 -7.91 7.65 -15.04 -0.12 -8.02 16 7 H 0.09 2.08 7.27 -52.49 -0.38 1.70 16 8 C 0.05 1.22 5.22 -17.44 -0.09 1.13 16 9 N -0.87 -22.80 11.04 55.51 0.61 -22.18 16 10 Si 0.92 19.69 29.57 -169.99 -5.03 14.66 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 14 C 0.48 11.62 6.73 -13.05 -0.09 11.53 16 15 O -0.59 -15.03 11.97 5.14 0.06 -14.97 16 16 C -0.14 -2.92 9.13 -37.53 -0.34 -3.27 16 17 C -0.10 -1.89 9.79 -37.13 -0.36 -2.25 16 18 C -0.03 -0.65 4.40 -105.06 -0.46 -1.11 16 19 C -0.03 -0.60 6.71 -39.10 -0.26 -0.86 16 20 C -0.13 -2.30 9.68 -39.65 -0.38 -2.68 16 21 C -0.10 -1.52 5.89 -104.49 -0.62 -2.14 16 22 C -0.11 -1.31 10.00 36.00 0.36 -0.95 16 23 C -0.14 -2.16 9.68 -39.65 -0.38 -2.54 16 24 C -0.11 -1.89 9.80 -39.10 -0.38 -2.28 16 25 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 30 H 0.12 3.17 5.37 -51.93 -0.28 2.89 16 31 H 0.07 1.67 7.50 -51.93 -0.39 1.28 16 32 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 33 H 0.13 2.61 6.87 -52.49 -0.36 2.25 16 34 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.11 2.22 7.33 -52.48 -0.38 1.83 16 36 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 39 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 40 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 41 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 343.79 15.07 5.18 5.18 Total: -1.00 -29.45 343.79 -7.62 -37.07 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.00 Total: 6.99 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.81 Total: -7.86 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.32 Total: -32.89 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.30 Total: -23.16 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.45 -7.62 -37.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493729973.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.934 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds