Wall clock time and date at job start Tue Mar 31 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42890 * 114.00374 * 2 1 4 4 C 1.52997 * 109.47566 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46784 * 65.00016 * 4 3 2 6 6 C 1.36721 * 120.00195 * 270.00105 * 5 4 3 7 7 H 1.07993 * 119.99879 * 137.49232 * 6 5 4 8 8 C 1.39128 * 119.99699 * 317.49901 * 6 5 4 9 9 N 1.31323 * 120.00156 * 351.67812 * 8 6 5 10 10 Si 1.86800 * 119.99864 * 171.68495 * 8 6 5 11 11 H 1.48506 * 109.46921 * 89.99370 * 10 8 6 12 12 H 1.48495 * 109.47080 * 209.99714 * 10 8 6 13 13 H 1.48497 * 109.47002 * 329.99523 * 10 8 6 14 14 C 1.34777 * 120.00216 * 90.00145 * 5 4 3 15 15 O 1.21758 * 119.99684 * 354.53861 * 14 5 4 16 16 C 1.46233 * 119.99959 * 174.80759 * 14 5 4 17 17 C 1.34976 * 119.99759 * 173.79510 * 16 14 5 18 18 C 1.47149 * 119.99865 * 348.72533 * 17 16 14 19 19 C 1.39870 * 120.17481 * 313.20815 * 18 17 16 20 20 C 1.37880 * 119.81988 * 179.74390 * 19 18 17 21 21 C 1.38412 * 120.17628 * 0.55732 * 20 19 18 22 22 C 1.50697 * 119.82432 * 179.72008 * 21 20 19 23 23 C 1.38415 * 120.35005 * 359.69805 * 21 20 19 24 24 C 1.37875 * 120.17461 * 0.02562 * 23 21 20 25 25 H 1.09008 * 109.46701 * 300.00000 * 1 2 3 26 26 H 1.08997 * 109.46873 * 59.99419 * 1 2 3 27 27 H 1.09000 * 109.47292 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47392 * 59.99935 * 3 2 1 29 29 H 1.09009 * 109.47179 * 300.00198 * 3 2 1 30 30 H 1.08997 * 109.46975 * 305.00472 * 4 3 2 31 31 H 1.08992 * 109.47904 * 184.99715 * 4 3 2 32 32 H 0.96995 * 120.00414 * 185.01302 * 9 8 6 33 33 H 1.07995 * 120.00016 * 353.79116 * 16 14 5 34 34 H 1.08000 * 120.00255 * 168.73623 * 17 16 14 35 35 H 1.08005 * 120.08983 * 0.02704 * 19 18 17 36 36 H 1.08010 * 119.91045 * 180.27529 * 20 19 18 37 37 H 1.09007 * 109.47222 * 269.97620 * 22 21 20 38 38 H 1.08998 * 109.47191 * 29.97369 * 22 21 20 39 39 H 1.08997 * 109.47122 * 149.98260 * 22 21 20 40 40 H 1.07999 * 119.91123 * 179.97438 * 23 21 20 41 41 H 1.08003 * 120.09207 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9756 0.5643 -1.2528 6 6 4.0965 -0.7950 -1.3369 7 1 3.7472 -1.3147 -2.2167 8 6 4.6694 -1.5085 -0.2889 9 7 5.2408 -0.8692 0.7058 10 14 4.6260 -3.3760 -0.2968 11 1 5.8354 -3.8963 -0.9838 12 1 4.5969 -3.8763 1.1010 13 1 3.4113 -3.8398 -1.0140 14 6 4.2614 1.3336 -2.3219 15 8 4.0594 2.5336 -2.2799 16 6 4.8086 0.7262 -3.5344 17 6 4.9775 1.4729 -4.6461 18 6 4.3895 2.8195 -4.7242 19 6 3.0609 3.0299 -4.3411 20 6 2.5189 4.2957 -4.4123 21 6 3.2825 5.3546 -4.8722 22 6 2.6802 6.7336 -4.9527 23 6 4.5965 5.1536 -5.2582 24 6 5.1547 3.8949 -5.1876 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8515 0.5680 0.8409 31 1 3.9787 2.1763 0.0889 32 1 5.7035 -1.3651 1.3991 33 1 5.0776 -0.3197 -3.5404 34 1 5.5440 1.0819 -5.4783 35 1 2.4624 2.2038 -3.9862 36 1 1.4944 4.4606 -4.1126 37 1 2.2235 6.8741 -5.9325 38 1 1.9208 6.8441 -4.1787 39 1 3.4607 7.4801 -4.8054 40 1 5.1857 5.9848 -5.6164 41 1 6.1800 3.7395 -5.4896 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493729973.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:05 Heat of formation + Delta-G solvation = -41.759985 kcal Electronic energy + Delta-G solvation = -23282.468657 eV Core-core repulsion = 19934.813326 eV Total energy + Delta-G solvation = -3347.655331 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.82165 -39.73510 -38.52260 -36.64888 -34.97095 -33.45489 -32.25876 -31.67331 -30.78118 -27.61615 -27.27567 -26.47456 -24.58242 -23.44637 -22.68787 -21.56611 -20.45537 -18.54186 -18.13720 -17.13379 -17.06340 -16.62610 -16.26600 -16.04430 -15.97646 -15.86944 -15.32922 -14.86793 -14.74630 -14.38380 -14.17673 -14.08063 -13.57765 -13.39644 -13.15914 -13.00412 -12.92210 -12.77926 -12.69966 -12.48805 -12.43834 -12.07189 -11.87144 -11.79642 -11.77941 -10.97348 -10.55132 -10.50131 -10.25155 -9.62957 -9.25514 -8.74865 -8.19185 -6.00702 0.03992 0.72367 1.10236 1.47352 1.50536 1.60244 2.33791 2.69047 2.98140 3.06055 3.13140 3.28071 4.01886 4.05468 4.16142 4.23468 4.25621 4.28888 4.46435 4.52250 4.55964 4.61130 4.62637 4.69396 4.75669 4.80825 4.87826 4.91395 4.93928 5.04575 5.28967 5.32061 5.38579 5.40946 5.52424 5.62181 5.73490 5.82127 5.94479 6.09968 6.30370 6.42195 6.50433 7.21359 7.69283 8.11626 8.81200 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018714 B = 0.005065 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.838774 B = 5527.289799 C = 6429.195893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.069 3.931 4 C 0.107 3.893 5 N -0.433 5.433 6 C -0.323 4.323 7 H 0.085 0.915 8 C 0.007 3.993 9 N -0.901 5.901 10 Si 0.983 3.017 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.475 3.525 15 O -0.613 6.613 16 C -0.182 4.182 17 C -0.064 4.064 18 C -0.070 4.070 19 C -0.050 4.050 20 C -0.149 4.149 21 C -0.095 4.095 22 C -0.106 4.106 23 C -0.141 4.141 24 C -0.113 4.113 25 H 0.051 0.949 26 H 0.037 0.963 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.028 0.972 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.270 0.730 33 H 0.135 0.865 34 H 0.162 0.838 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.143 0.857 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.690 6.157 -8.487 11.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C -0.008 4.008 4 C -0.017 4.017 5 N -0.149 5.149 6 C -0.451 4.451 7 H 0.103 0.897 8 C -0.195 4.195 9 N -0.539 5.539 10 Si 0.807 3.193 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.268 3.732 15 O -0.502 6.502 16 C -0.202 4.202 17 C -0.084 4.084 18 C -0.071 4.071 19 C -0.069 4.069 20 C -0.167 4.167 21 C -0.095 4.095 22 C -0.163 4.163 23 C -0.159 4.159 24 C -0.131 4.131 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.112 0.888 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.121 0.879 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.152 0.848 34 H 0.179 0.821 35 H 0.103 0.897 36 H 0.138 0.862 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.161 0.839 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.664 6.495 -8.177 11.437 hybrid contribution -0.158 -0.959 0.703 1.200 sum -4.822 5.536 -7.474 10.476 Atomic orbital electron populations 1.22878 0.80842 1.03286 1.00105 1.88083 1.20265 1.27762 1.95249 1.22749 0.94736 0.84469 0.98891 1.21504 0.91274 0.97608 0.91291 1.43430 1.55369 1.06339 1.09749 1.19457 1.39232 0.81367 1.05028 0.89710 1.26212 0.94076 1.04159 0.95014 1.69732 1.33575 1.37769 1.12815 0.85076 0.78943 0.77794 0.77449 1.19447 1.21039 1.18901 1.19054 0.81326 0.86235 0.86573 1.90693 1.59454 1.15515 1.84554 1.23173 1.03410 1.00651 0.92978 1.22572 0.96110 0.92332 0.97367 1.19060 0.93966 0.94184 0.99840 1.20939 0.94795 0.96780 0.94339 1.20955 1.00261 0.92694 1.02754 1.20260 0.94478 0.96430 0.98321 1.20786 1.01071 0.91545 1.02876 1.21110 0.95150 0.97255 1.02351 1.21414 0.99719 0.92472 0.99537 0.93082 0.94410 0.88793 0.92100 0.95420 0.87918 0.92917 0.91971 0.84755 0.82111 0.89710 0.86235 0.89858 0.91706 0.90540 0.83892 0.84567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.39 -17.20 10.17 -148.98 -1.52 -18.72 16 3 C 0.07 3.00 6.28 71.98 0.45 3.45 16 4 C 0.11 5.40 5.37 86.38 0.46 5.86 16 5 N -0.43 -22.53 2.48 -640.57 -1.59 -24.12 16 6 C -0.32 -16.73 7.65 84.14 0.64 -16.08 16 7 H 0.09 4.27 7.27 -2.91 -0.02 4.25 16 8 C 0.01 0.37 5.22 84.98 0.44 0.82 16 9 N -0.90 -48.75 11.04 21.69 0.24 -48.51 16 10 Si 0.98 40.77 29.57 68.60 2.03 42.80 16 11 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 12 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 14 C 0.48 23.82 6.73 86.32 0.58 24.40 16 15 O -0.61 -32.08 11.97 -4.53 -0.05 -32.14 16 16 C -0.18 -7.69 9.13 23.60 0.22 -7.48 16 17 C -0.06 -2.26 9.79 23.86 0.23 -2.02 16 18 C -0.07 -2.61 4.40 -20.15 -0.09 -2.70 16 19 C -0.05 -1.96 6.71 22.58 0.15 -1.81 16 20 C -0.15 -5.09 9.68 22.23 0.22 -4.88 16 21 C -0.09 -2.79 5.89 -19.78 -0.12 -2.91 16 22 C -0.11 -2.22 10.00 71.23 0.71 -1.50 16 23 C -0.14 -4.04 9.68 22.23 0.22 -3.82 16 24 C -0.11 -3.60 9.80 22.58 0.22 -3.38 16 25 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 29 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.10 5.59 5.37 -2.39 -0.01 5.58 16 31 H 0.05 2.72 7.50 -2.39 -0.02 2.70 16 32 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 33 H 0.13 5.47 6.87 -2.91 -0.02 5.45 16 34 H 0.16 4.28 8.06 -2.91 -0.02 4.26 16 35 H 0.08 3.64 7.33 -2.91 -0.02 3.61 16 36 H 0.12 3.69 8.06 -2.91 -0.02 3.66 16 37 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.06 1.32 8.08 -2.39 -0.02 1.30 16 39 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 40 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 41 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -65.62 343.79 5.71 -59.91 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 1.01 Total: 30.77 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 5.59 Total: -10.01 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -1.35 Total: -72.62 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -1.57 Total: -50.85 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -65.62 5.71 -59.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493729973.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.152 kcal (2) G-P(sol) polarization free energy of solvation -65.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds