Wall clock time and date at job start Tue Mar 31 2020 06:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38454 * 119.82498 * 2 1 4 4 C 1.37848 * 120.17131 * 179.97438 * 3 2 1 5 5 C 1.39911 * 119.82743 * 0.27853 * 4 3 2 6 6 C 1.47395 * 120.17518 * 179.72053 * 5 4 3 7 7 O 1.21357 * 119.99819 * 354.67110 * 6 5 4 8 8 C 1.49289 * 120.00248 * 174.66944 * 6 5 4 9 9 O 1.21371 * 119.99748 * 275.46933 * 8 6 5 10 10 N 1.34778 * 120.00299 * 95.46575 * 8 6 5 11 11 C 1.46501 * 119.99836 * 4.95454 * 10 8 6 12 12 C 1.50698 * 109.46948 * 89.99911 * 11 10 8 13 13 H 1.07997 * 119.99830 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99931 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00003 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00191 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47236 * 59.99971 * 16 14 12 18 18 H 1.48503 * 109.47086 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47056 * 300.00019 * 16 14 12 20 20 C 1.46500 * 120.00097 * 184.95654 * 10 8 6 21 21 C 1.53002 * 109.47292 * 299.46844 * 20 10 8 22 22 C 1.53001 * 109.47388 * 59.46378 * 20 10 8 23 23 C 1.39913 * 119.65293 * 359.44972 * 5 4 3 24 24 C 1.37856 * 119.82091 * 0.55232 * 23 5 4 25 25 H 1.08994 * 109.47613 * 89.99563 * 1 2 3 26 26 H 1.09003 * 109.46707 * 209.99973 * 1 2 3 27 27 H 1.09000 * 109.46609 * 329.99580 * 1 2 3 28 28 H 1.07994 * 119.90830 * 359.96294 * 3 2 1 29 29 H 1.08001 * 120.08614 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.46710 * 210.00304 * 11 10 8 31 31 H 1.09002 * 109.47036 * 329.99745 * 11 10 8 32 32 H 0.97005 * 120.00123 * 180.02562 * 15 14 12 33 33 H 1.09001 * 109.47084 * 179.46791 * 20 10 8 34 34 H 1.09000 * 109.47216 * 66.08883 * 21 20 10 35 35 H 1.08993 * 109.47117 * 186.09662 * 21 20 10 36 36 H 1.09006 * 109.46910 * 306.09296 * 21 20 10 37 37 H 1.08998 * 109.47085 * 63.46281 * 22 20 10 38 38 H 1.09002 * 109.47413 * 183.45935 * 22 20 10 39 39 H 1.09002 * 109.47322 * 303.46359 * 22 20 10 40 40 H 1.07992 * 120.09325 * 180.26910 * 23 5 4 41 41 H 1.07993 * 119.91539 * 179.70648 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2012 0.0000 4 6 3.5741 1.2095 0.0005 5 6 4.2773 0.0000 -0.0048 6 6 5.7512 0.0000 -0.0105 7 8 6.3576 1.0466 -0.1082 8 6 6.4982 -1.2876 0.1039 9 8 6.7190 -1.7659 1.1973 10 7 6.9271 -1.9189 -1.0069 11 6 6.7568 -1.2897 -2.3190 12 6 7.9673 -0.4491 -2.6339 13 1 8.7821 -0.3898 -1.9276 14 6 8.0349 0.2434 -3.8242 15 7 7.0428 0.1708 -4.6845 16 14 9.5356 1.2848 -4.2149 17 1 10.7451 0.4234 -4.2319 18 1 9.3634 1.9216 -5.5454 19 1 9.6915 2.3368 -3.1785 20 6 7.5637 -3.2342 -0.9024 21 6 8.8242 -3.1238 -0.0421 22 6 6.5903 -4.2220 -0.2562 23 6 3.5741 -1.2096 0.0010 24 6 2.1956 -1.2012 0.0004 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3632 0.8900 0.5139 28 1 1.6513 2.1339 -0.0006 29 1 4.1098 2.1472 0.0010 30 1 6.6425 -2.0617 -3.0799 31 1 5.8688 -0.6577 -2.3063 32 1 7.0905 0.6577 -5.5221 33 1 7.8330 -3.5877 -1.8977 34 1 8.5447 -2.8752 0.9817 35 1 9.3558 -4.0753 -0.0529 36 1 9.4700 -2.3422 -0.4424 37 1 5.7195 -4.3474 -0.8996 38 1 7.0846 -5.1843 -0.1223 39 1 6.2733 -3.8382 0.7135 40 1 4.1097 -2.1473 0.0013 41 1 1.6513 -2.1339 0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522963549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:29 Heat of formation + Delta-G solvation = -50.751375 kcal Electronic energy + Delta-G solvation = -23458.373960 eV Core-core repulsion = 20110.328733 eV Total energy + Delta-G solvation = -3348.045227 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.31981 -38.94424 -37.70676 -35.53527 -33.16083 -32.84481 -31.54346 -30.93876 -27.93605 -27.05539 -26.69217 -24.72189 -22.88688 -22.54495 -21.89170 -20.57893 -18.38518 -16.89477 -16.67224 -16.06678 -15.69641 -15.24900 -15.10525 -14.43476 -14.33628 -14.05759 -13.96291 -13.63367 -13.46246 -13.36154 -12.95772 -12.68594 -12.33084 -12.27150 -11.93911 -11.82102 -11.67499 -11.54510 -11.47460 -11.03515 -10.98574 -10.93904 -10.75897 -10.64348 -10.36660 -10.02026 -9.74300 -8.91448 -8.65143 -8.63241 -8.50962 -7.88702 -6.15668 -4.21861 0.79690 1.47283 2.54816 3.00750 3.29597 3.32942 3.37930 3.50113 3.91888 4.36190 4.56375 4.78354 4.81486 5.02783 5.15745 5.19056 5.32890 5.43454 5.46814 5.52504 5.60289 5.66272 5.70832 5.75113 6.00267 6.02924 6.06578 6.11149 6.26114 6.36724 6.38323 6.50009 6.54229 6.62741 6.67399 6.80781 6.95851 7.07134 7.42127 7.71454 7.79356 8.03069 8.11090 8.60393 8.85817 9.45404 10.91829 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013177 B = 0.006133 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.453471 B = 4564.518709 C = 5786.648562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.061 4.061 3 C -0.135 4.135 4 C -0.053 4.053 5 C -0.156 4.156 6 C 0.398 3.602 7 O -0.405 6.405 8 C 0.497 3.503 9 O -0.545 6.545 10 N -0.573 5.573 11 C 0.235 3.765 12 C -0.533 4.533 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.893 5.893 16 Si 0.898 3.102 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.145 3.855 21 C -0.165 4.165 22 C -0.168 4.168 23 C -0.059 4.059 24 C -0.133 4.133 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.128 0.872 29 H 0.135 0.865 30 H 0.043 0.957 31 H 0.034 0.966 32 H 0.266 0.734 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.128 0.872 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.874 -4.190 7.183 13.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.061 4.061 3 C -0.153 4.153 4 C -0.071 4.071 5 C -0.157 4.157 6 C 0.269 3.731 7 O -0.275 6.275 8 C 0.282 3.718 9 O -0.426 6.426 10 N -0.304 5.304 11 C 0.115 3.885 12 C -0.572 4.572 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.531 5.531 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.199 1.199 20 C 0.042 3.958 21 C -0.223 4.223 22 C -0.226 4.226 23 C -0.077 4.077 24 C -0.151 4.151 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.145 0.855 29 H 0.153 0.847 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.146 0.854 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.475 -3.803 7.466 13.414 hybrid contribution 0.893 0.615 -0.591 1.235 sum -9.582 -3.188 6.875 12.217 Atomic orbital electron populations 1.20850 0.91016 1.02855 1.02609 1.20183 0.96190 0.93211 0.96482 1.20966 0.93759 0.97732 1.02831 1.21382 0.94037 0.97699 0.93956 1.20359 0.93819 0.94670 1.06861 1.22315 0.88741 0.89744 0.72308 1.90609 1.70996 1.33414 1.32439 1.20515 0.80658 0.85501 0.85099 1.90645 1.59098 1.66067 1.26757 1.48455 1.55602 1.17977 1.08414 1.19568 0.97698 0.93575 0.77642 1.21378 1.03718 1.28620 1.03464 0.91945 1.24907 0.96606 0.96280 0.95840 1.69910 1.31356 1.42373 1.09471 0.86539 0.82747 0.80652 0.77515 1.20079 1.21120 1.19912 1.20963 0.92531 0.82297 1.00023 1.22182 0.96977 1.01329 1.01849 1.22208 0.99430 0.98622 1.02325 1.21409 0.94384 0.97302 0.94598 1.20939 0.93739 0.97729 1.02722 0.90764 0.91366 0.91387 0.85455 0.84711 0.93918 0.94813 0.92487 0.89257 0.90833 0.92784 0.92178 0.92918 0.92109 0.90881 0.85364 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.00 36.01 0.36 -0.61 16 2 C -0.06 -0.72 5.89 -104.46 -0.62 -1.33 16 3 C -0.13 -1.73 9.68 -39.64 -0.38 -2.12 16 4 C -0.05 -0.84 9.60 -39.10 -0.38 -1.21 16 5 C -0.16 -2.80 5.88 -104.92 -0.62 -3.42 16 6 C 0.40 8.59 5.02 -31.26 -0.16 8.43 16 7 O -0.40 -9.78 17.11 5.49 0.09 -9.69 16 8 C 0.50 10.75 5.48 -11.66 -0.06 10.68 16 9 O -0.55 -11.98 13.39 5.48 0.07 -11.91 16 10 N -0.57 -12.17 2.41 -168.03 -0.40 -12.58 16 11 C 0.23 5.73 5.02 -5.19 -0.03 5.70 16 12 C -0.53 -14.55 9.39 -34.44 -0.32 -14.88 16 13 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 14 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 15 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 16 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.15 2.62 3.28 -67.93 -0.22 2.40 16 21 C -0.17 -2.92 9.02 37.16 0.34 -2.58 16 22 C -0.17 -2.54 9.16 37.16 0.34 -2.20 16 23 C -0.06 -0.91 9.47 -39.09 -0.37 -1.28 16 24 C -0.13 -1.70 9.68 -39.64 -0.38 -2.08 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 27 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 28 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.14 2.11 7.66 -52.49 -0.40 1.71 16 30 H 0.04 1.06 7.91 -51.93 -0.41 0.65 16 31 H 0.03 0.88 6.79 -51.93 -0.35 0.53 16 32 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.09 1.58 7.79 -51.93 -0.40 1.18 16 34 H 0.07 1.39 6.25 -51.93 -0.32 1.06 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.21 6.21 -51.93 -0.32 0.88 16 40 H 0.13 1.97 7.15 -52.49 -0.38 1.59 16 41 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 347.96 15.07 5.24 5.24 Total: -1.00 -31.06 347.96 -7.81 -38.88 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.94 Total: 0.81 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -2.60 Total: -2.75 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.33 Total: -37.21 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: 0.17 Total: -21.59 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.06 -7.81 -38.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522963549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.874 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds