Wall clock time and date at job start Tue Mar 31 2020 06:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38454 * 119.82498 * 2 1 4 4 C 1.37848 * 120.17131 * 179.97438 * 3 2 1 5 5 C 1.39911 * 119.82743 * 0.27853 * 4 3 2 6 6 C 1.47395 * 120.17518 * 179.72053 * 5 4 3 7 7 O 1.21357 * 119.99819 * 354.67110 * 6 5 4 8 8 C 1.49289 * 120.00248 * 174.66944 * 6 5 4 9 9 O 1.21371 * 119.99748 * 275.46933 * 8 6 5 10 10 N 1.34778 * 120.00299 * 95.46575 * 8 6 5 11 11 C 1.46501 * 119.99836 * 4.95454 * 10 8 6 12 12 C 1.50698 * 109.46948 * 89.99911 * 11 10 8 13 13 H 1.07997 * 119.99830 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99931 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00003 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00191 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47236 * 59.99971 * 16 14 12 18 18 H 1.48503 * 109.47086 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47056 * 300.00019 * 16 14 12 20 20 C 1.46500 * 120.00097 * 184.95654 * 10 8 6 21 21 C 1.53002 * 109.47292 * 299.46844 * 20 10 8 22 22 C 1.53001 * 109.47388 * 59.46378 * 20 10 8 23 23 C 1.39913 * 119.65293 * 359.44972 * 5 4 3 24 24 C 1.37856 * 119.82091 * 0.55232 * 23 5 4 25 25 H 1.08994 * 109.47613 * 89.99563 * 1 2 3 26 26 H 1.09003 * 109.46707 * 209.99973 * 1 2 3 27 27 H 1.09000 * 109.46609 * 329.99580 * 1 2 3 28 28 H 1.07994 * 119.90830 * 359.96294 * 3 2 1 29 29 H 1.08001 * 120.08614 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.46710 * 210.00304 * 11 10 8 31 31 H 1.09002 * 109.47036 * 329.99745 * 11 10 8 32 32 H 0.97005 * 120.00123 * 180.02562 * 15 14 12 33 33 H 1.09001 * 109.47084 * 179.46791 * 20 10 8 34 34 H 1.09000 * 109.47216 * 66.08883 * 21 20 10 35 35 H 1.08993 * 109.47117 * 186.09662 * 21 20 10 36 36 H 1.09006 * 109.46910 * 306.09296 * 21 20 10 37 37 H 1.08998 * 109.47085 * 63.46281 * 22 20 10 38 38 H 1.09002 * 109.47413 * 183.45935 * 22 20 10 39 39 H 1.09002 * 109.47322 * 303.46359 * 22 20 10 40 40 H 1.07992 * 120.09325 * 180.26910 * 23 5 4 41 41 H 1.07993 * 119.91539 * 179.70648 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2012 0.0000 4 6 3.5741 1.2095 0.0005 5 6 4.2773 0.0000 -0.0048 6 6 5.7512 0.0000 -0.0105 7 8 6.3576 1.0466 -0.1082 8 6 6.4982 -1.2876 0.1039 9 8 6.7190 -1.7659 1.1973 10 7 6.9271 -1.9189 -1.0069 11 6 6.7568 -1.2897 -2.3190 12 6 7.9673 -0.4491 -2.6339 13 1 8.7821 -0.3898 -1.9276 14 6 8.0349 0.2434 -3.8242 15 7 7.0428 0.1708 -4.6845 16 14 9.5356 1.2848 -4.2149 17 1 10.7451 0.4234 -4.2319 18 1 9.3634 1.9216 -5.5454 19 1 9.6915 2.3368 -3.1785 20 6 7.5637 -3.2342 -0.9024 21 6 8.8242 -3.1238 -0.0421 22 6 6.5903 -4.2220 -0.2562 23 6 3.5741 -1.2096 0.0010 24 6 2.1956 -1.2012 0.0004 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3632 0.8900 0.5139 28 1 1.6513 2.1339 -0.0006 29 1 4.1098 2.1472 0.0010 30 1 6.6425 -2.0617 -3.0799 31 1 5.8688 -0.6577 -2.3063 32 1 7.0905 0.6577 -5.5221 33 1 7.8330 -3.5877 -1.8977 34 1 8.5447 -2.8752 0.9817 35 1 9.3558 -4.0753 -0.0529 36 1 9.4700 -2.3422 -0.4424 37 1 5.7195 -4.3474 -0.8996 38 1 7.0846 -5.1843 -0.1223 39 1 6.2733 -3.8382 0.7135 40 1 4.1097 -2.1473 0.0013 41 1 1.6513 -2.1339 0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522963549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:26 Heat of formation + Delta-G solvation = -67.840955 kcal Electronic energy + Delta-G solvation = -23459.115019 eV Core-core repulsion = 20110.328733 eV Total energy + Delta-G solvation = -3348.786287 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.90852 -40.26615 -39.25388 -37.25659 -35.08921 -33.96792 -33.22820 -32.06469 -29.32453 -28.76263 -28.04381 -26.16913 -24.82079 -23.66814 -23.23699 -21.91334 -19.90042 -18.75203 -18.48124 -17.73274 -17.35330 -16.62960 -16.30241 -16.22221 -15.80126 -15.47254 -15.34413 -14.91349 -14.62414 -14.52756 -14.45420 -14.30895 -14.03096 -13.71356 -13.39728 -13.02197 -12.87841 -12.86385 -12.84693 -12.78356 -12.66104 -12.35648 -12.26593 -12.15612 -12.00123 -11.73699 -11.68848 -10.68417 -10.27122 -10.02837 -9.74367 -9.66571 -8.27872 -6.41117 -0.51762 0.36803 1.07936 1.30953 1.35099 1.38124 1.45577 1.90645 2.35440 2.72779 2.94360 3.03595 3.64724 3.85137 3.94036 3.97539 4.06892 4.21873 4.33213 4.34526 4.39080 4.60053 4.72183 4.76253 4.78634 4.90112 4.90955 4.92069 4.97373 5.02081 5.03658 5.21318 5.24286 5.28376 5.33213 5.39282 5.53478 5.58758 5.75274 5.91019 5.94413 6.11340 6.30029 6.66663 6.93579 7.29655 8.78443 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013177 B = 0.006133 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.453471 B = 4564.518709 C = 5786.648562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.046 4.046 3 C -0.133 4.133 4 C -0.067 4.067 5 C -0.193 4.193 6 C 0.392 3.608 7 O -0.452 6.452 8 C 0.495 3.505 9 O -0.553 6.553 10 N -0.573 5.573 11 C 0.252 3.748 12 C -0.547 4.547 13 H 0.046 0.954 14 C 0.023 3.977 15 N -0.917 5.917 16 Si 0.953 3.047 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.282 1.282 20 C 0.131 3.869 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.066 4.066 24 C -0.131 4.131 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.159 0.841 29 H 0.125 0.875 30 H 0.039 0.961 31 H 0.014 0.986 32 H 0.269 0.731 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.033 0.967 37 H 0.061 0.939 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.124 0.876 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.930 -5.267 7.140 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.046 4.046 3 C -0.151 4.151 4 C -0.086 4.086 5 C -0.195 4.195 6 C 0.267 3.733 7 O -0.326 6.326 8 C 0.280 3.720 9 O -0.434 6.434 10 N -0.304 5.304 11 C 0.131 3.869 12 C -0.585 4.585 13 H 0.065 0.935 14 C -0.178 4.178 15 N -0.556 5.556 16 Si 0.778 3.222 17 H -0.189 1.189 18 H -0.198 1.198 19 H -0.208 1.208 20 C 0.029 3.971 21 C -0.215 4.215 22 C -0.214 4.214 23 C -0.085 4.085 24 C -0.149 4.149 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.177 0.823 29 H 0.143 0.857 30 H 0.057 0.943 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.142 0.858 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.536 -4.920 7.431 15.381 hybrid contribution 1.409 0.913 -0.537 1.762 sum -11.127 -4.007 6.894 13.690 Atomic orbital electron populations 1.20966 0.87622 1.04699 1.03877 1.20726 0.98496 0.92262 0.93124 1.21343 0.92354 0.99824 1.01546 1.21491 0.95654 0.96640 0.94779 1.20264 0.91725 0.96685 1.10810 1.22836 0.90737 0.89007 0.70733 1.90565 1.72161 1.34456 1.35390 1.20667 0.80559 0.85732 0.85071 1.90623 1.59446 1.66527 1.26798 1.48426 1.55749 1.19081 1.07130 1.19154 0.95862 0.92878 0.78964 1.21555 1.04167 1.29441 1.03353 0.93538 1.25614 0.99160 0.97227 0.95749 1.69982 1.32694 1.43079 1.09827 0.85676 0.80060 0.79023 0.77397 1.18905 1.19780 1.20836 1.21330 0.93467 0.81435 1.00818 1.22112 0.96620 1.02372 1.00443 1.22112 0.99207 0.98873 1.01166 1.21494 0.95863 0.96118 0.95000 1.21349 0.92461 0.99763 1.01294 0.89479 0.89531 0.89698 0.82296 0.85735 0.94274 0.96778 0.92160 0.88807 0.92321 0.89095 0.94764 0.91998 0.88959 0.92398 0.85822 0.82084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 10.00 71.24 0.71 -0.65 16 2 C -0.05 -0.95 5.89 -19.76 -0.12 -1.06 16 3 C -0.13 -3.17 9.68 22.23 0.22 -2.96 16 4 C -0.07 -2.20 9.60 22.58 0.22 -1.98 16 5 C -0.19 -7.27 5.88 -20.06 -0.12 -7.38 16 6 C 0.39 18.02 5.02 27.66 0.14 18.15 16 7 O -0.45 -23.52 17.11 -3.27 -0.06 -23.58 16 8 C 0.49 22.36 5.48 87.22 0.48 22.84 16 9 O -0.55 -25.17 13.39 -3.31 -0.04 -25.21 16 10 N -0.57 -25.15 2.41 -803.88 -1.93 -27.08 16 11 C 0.25 12.79 5.02 85.63 0.43 13.22 16 12 C -0.55 -30.86 9.39 25.60 0.24 -30.62 16 13 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 14 C 0.02 1.30 5.46 84.65 0.46 1.76 16 15 N -0.92 -52.82 13.29 21.45 0.28 -52.53 16 16 Si 0.95 44.95 29.54 68.60 2.03 46.97 16 17 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 20 C 0.13 4.74 3.28 44.99 0.15 4.89 16 21 C -0.16 -5.54 9.02 71.98 0.65 -4.89 16 22 C -0.16 -4.50 9.16 71.98 0.66 -3.84 16 23 C -0.07 -2.07 9.47 22.59 0.21 -1.86 16 24 C -0.13 -3.02 9.68 22.23 0.22 -2.81 16 25 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 26 H 0.09 0.77 8.08 -2.39 -0.02 0.75 16 27 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 28 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 29 H 0.12 4.18 7.66 -2.91 -0.02 4.16 16 30 H 0.04 2.00 7.91 -2.39 -0.02 1.98 16 31 H 0.01 0.78 6.79 -2.39 -0.02 0.76 16 32 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 33 H 0.09 3.28 7.79 -2.39 -0.02 3.26 16 34 H 0.06 2.23 6.25 -2.39 -0.01 2.21 16 35 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 1.87 6.21 -2.39 -0.01 1.85 16 40 H 0.12 3.85 7.15 -2.91 -0.02 3.83 16 41 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -70.37 347.96 5.84 -64.53 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.02 Total: 14.10 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 4.54 Total: 2.81 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -1.65 Total: -79.62 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -0.10 Total: -48.79 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -70.37 5.84 -64.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522963549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.312 kcal (2) G-P(sol) polarization free energy of solvation -70.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds