Wall clock time and date at job start Tue Mar 31 2020 05:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00138 * 2 1 4 4 C 1.38217 * 119.99992 * 179.79430 * 3 2 1 5 5 C 1.38263 * 119.99622 * 0.42087 * 4 3 2 6 6 C 1.50700 * 119.99552 * 179.81073 * 5 4 3 7 7 C 1.50700 * 109.47363 * 269.72845 * 6 5 4 8 8 O 1.21286 * 119.99450 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00116 * 180.02562 * 7 6 5 10 10 C 1.47066 * 136.05397 * 179.97438 * 9 7 6 11 11 C 1.53503 * 87.98596 * 152.84244 * 10 9 7 12 12 O 1.42897 * 114.20466 * 272.48084 * 11 10 9 13 13 C 1.50701 * 114.20491 * 139.65156 * 11 10 9 14 14 H 1.07990 * 120.00399 * 0.02562 * 13 11 10 15 15 C 1.37879 * 119.99442 * 180.02562 * 13 11 10 16 16 N 1.31517 * 120.00173 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99605 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47160 * 59.99885 * 17 15 13 19 19 H 1.48505 * 109.46723 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47020 * 299.99125 * 17 15 13 21 21 C 1.47060 * 136.06000 * 359.94777 * 9 7 6 22 22 C 1.38210 * 120.00450 * 359.53972 * 5 4 3 23 23 C 1.38221 * 119.99999 * 179.97438 * 2 1 3 24 24 C 1.50707 * 119.99710 * 359.97438 * 23 2 1 25 25 H 1.09005 * 109.46413 * 270.01629 * 1 2 3 26 26 H 1.09000 * 109.47397 * 30.01360 * 1 2 3 27 27 H 1.09000 * 109.47417 * 150.01678 * 1 2 3 28 28 H 1.07994 * 119.99813 * 0.02562 * 3 2 1 29 29 H 1.07994 * 119.99921 * 180.23947 * 4 3 2 30 30 H 1.09004 * 109.47013 * 149.73143 * 6 5 4 31 31 H 1.08998 * 109.47212 * 29.73005 * 6 5 4 32 32 H 1.09000 * 113.46827 * 267.61848 * 10 9 7 33 33 H 1.09003 * 113.47151 * 38.06638 * 10 9 7 34 34 H 0.96701 * 113.99865 * 179.97438 * 12 11 10 35 35 H 0.97003 * 119.99434 * 180.02562 * 16 15 13 36 36 H 1.09007 * 113.46761 * 321.93701 * 21 9 7 37 37 H 1.09003 * 113.46830 * 92.37669 * 21 9 7 38 38 H 1.07991 * 120.00256 * 180.25598 * 22 5 4 39 39 H 1.08997 * 109.47019 * 270.02354 * 24 23 2 40 40 H 1.09001 * 109.46955 * 30.02741 * 24 23 2 41 41 H 1.09001 * 109.46828 * 150.02320 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0043 5 6 4.2717 -0.0002 -0.0002 6 6 5.7787 -0.0002 0.0002 7 6 6.2814 -0.0013 -1.4205 8 8 5.4935 -0.0026 -2.3425 9 7 7.6065 -0.0021 -1.6664 10 6 8.4614 -0.0037 -2.8631 11 6 9.5409 0.6971 -2.0266 12 8 9.4355 2.1220 -2.0092 13 6 10.9409 0.2032 -2.2857 14 1 11.1121 -0.5794 -3.0099 15 6 12.0033 0.7505 -1.5980 16 7 11.7949 1.7040 -0.7164 17 14 13.7388 0.1388 -1.9197 18 1 14.0842 0.3579 -3.3472 19 1 14.6934 0.8837 -1.0599 20 1 13.8184 -1.3109 -1.6079 21 6 8.8339 -0.0011 -0.8563 22 6 3.5807 -1.1971 0.0006 23 6 2.1981 -1.1970 0.0005 24 6 1.4445 -2.5021 0.0017 25 1 -0.3632 0.0003 1.0278 26 1 -0.3634 0.8898 -0.5140 27 1 -0.3634 -0.8901 -0.5136 28 1 1.6583 2.1326 0.0004 29 1 4.1204 2.1325 0.0082 30 1 6.1419 -0.8898 0.5148 31 1 6.1419 0.8902 0.5134 32 1 8.7472 -1.0032 -3.1910 33 1 8.0735 0.6120 -3.6746 34 1 10.1168 2.5604 -1.4811 35 1 12.5424 2.0892 -0.2330 36 1 8.7627 0.6168 0.0389 37 1 9.2188 -0.9999 -0.6502 38 1 4.1206 -2.1323 0.0013 39 1 1.2629 -2.8159 1.0296 40 1 0.4921 -2.3722 -0.5123 41 1 2.0336 -3.2622 -0.5115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526018486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:32 Heat of formation + Delta-G solvation = -34.171395 kcal Electronic energy + Delta-G solvation = -22419.909703 eV Core-core repulsion = 19072.583438 eV Total energy + Delta-G solvation = -3347.326265 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.94209 -39.22208 -37.35523 -34.08772 -33.95767 -32.21170 -32.19887 -30.11331 -28.35310 -27.16930 -25.73092 -25.10324 -24.41769 -22.04087 -20.61107 -19.72891 -18.20130 -17.42416 -16.26400 -15.98187 -15.86372 -15.31440 -14.93305 -14.68377 -14.54828 -14.25024 -14.11528 -13.35062 -13.05644 -12.96765 -12.86247 -12.63377 -12.51451 -12.42461 -12.03565 -11.96998 -11.57606 -11.55492 -11.48909 -11.06280 -11.03013 -10.87253 -10.79010 -10.51061 -10.27638 -9.63556 -9.19434 -8.79465 -8.61909 -8.42511 -8.27684 -7.82862 -6.41882 -4.52249 1.42466 1.52060 3.14815 3.20851 3.22067 3.24818 3.52319 3.93360 4.16953 4.76263 4.79691 4.81257 4.93439 5.04939 5.11777 5.18081 5.32510 5.41137 5.50105 5.57031 5.61115 5.63645 5.71790 5.75449 5.79563 5.85024 5.93960 6.18519 6.22345 6.24840 6.41002 6.50423 6.53430 6.65239 6.68298 6.69826 6.76331 7.09781 7.14396 7.61293 7.79234 8.50027 8.55345 8.80449 9.19150 9.47795 10.64713 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.040180 B = 0.003052 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.691311 B = 9170.724880 C = 9358.086145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.116 4.116 4 C -0.106 4.106 5 C -0.056 4.056 6 C -0.097 4.097 7 C 0.537 3.463 8 O -0.556 6.556 9 N -0.637 5.637 10 C 0.107 3.893 11 C 0.240 3.760 12 O -0.571 6.571 13 C -0.534 4.534 14 H 0.072 0.928 15 C 0.072 3.928 16 N -0.899 5.899 17 Si 0.909 3.091 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.071 3.929 22 C -0.103 4.103 23 C -0.090 4.090 24 C -0.114 4.114 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.394 0.606 35 H 0.274 0.726 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.549 -4.441 5.665 16.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.134 4.134 4 C -0.124 4.124 5 C -0.057 4.057 6 C -0.137 4.137 7 C 0.326 3.674 8 O -0.436 6.436 9 N -0.370 5.370 10 C -0.015 4.015 11 C 0.198 3.802 12 O -0.384 6.384 13 C -0.572 4.572 14 H 0.090 0.910 15 C -0.131 4.131 16 N -0.539 5.539 17 Si 0.736 3.264 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.052 4.052 22 C -0.121 4.121 23 C -0.090 4.090 24 C -0.171 4.171 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.250 0.750 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.136 0.864 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.600 -4.428 4.984 16.965 hybrid contribution 1.573 -0.161 0.370 1.624 sum -14.026 -4.589 5.354 15.699 Atomic orbital electron populations 1.20818 0.91619 1.02625 1.01954 1.19682 0.95688 0.92745 1.01414 1.20914 0.94009 0.97270 1.01242 1.20976 0.94163 0.97533 0.99751 1.19317 0.93845 0.93447 0.99046 1.20587 0.92477 1.05006 0.95585 1.19862 0.80286 0.76632 0.90603 1.90661 1.54429 1.51978 1.46509 1.49733 1.03415 1.70880 1.12997 1.23307 0.88151 0.99947 0.90142 1.19534 0.91295 0.80270 0.89081 1.86049 1.58486 1.18331 1.75560 1.21402 0.90566 1.21268 1.23974 0.90990 1.25082 1.00113 0.94243 0.93626 1.69257 1.32932 1.26249 1.25475 0.86361 0.82423 0.78989 0.78594 1.19827 1.20977 1.19871 1.24221 0.81121 1.01148 0.98753 1.20812 0.93407 0.97418 1.00429 1.19650 0.93513 0.94779 1.01019 1.20826 1.00013 0.94248 1.01995 0.91479 0.91827 0.91367 0.86276 0.86197 0.88503 0.88216 0.89814 0.91659 0.75003 0.91516 0.91755 0.90101 0.86397 0.91415 0.91340 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.60 36.01 0.35 -0.69 16 2 C -0.10 -1.19 5.88 -104.62 -0.62 -1.81 16 3 C -0.12 -1.53 9.70 -39.58 -0.38 -1.92 16 4 C -0.11 -1.58 9.70 -39.58 -0.38 -1.96 16 5 C -0.06 -0.88 4.37 -104.62 -0.46 -1.34 16 6 C -0.10 -1.55 5.66 -29.03 -0.16 -1.71 16 7 C 0.54 11.02 8.07 -10.99 -0.09 10.93 16 8 O -0.56 -13.17 16.81 5.55 0.09 -13.08 16 9 N -0.64 -13.50 3.69 -185.20 -0.68 -14.19 16 10 C 0.11 2.36 8.03 -8.51 -0.07 2.29 16 11 C 0.24 5.73 1.58 -91.24 -0.14 5.59 16 12 O -0.57 -14.71 13.54 -35.23 -0.48 -15.19 16 13 C -0.53 -13.23 8.69 -34.44 -0.30 -13.53 16 14 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 15 C 0.07 1.76 5.40 -17.82 -0.10 1.67 16 16 N -0.90 -22.47 11.01 55.43 0.61 -21.86 16 17 Si 0.91 19.18 29.54 -169.99 -5.02 14.16 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 21 C 0.07 1.49 7.84 -8.50 -0.07 1.43 16 22 C -0.10 -1.49 9.36 -39.59 -0.37 -1.86 16 23 C -0.09 -1.16 5.88 -104.62 -0.62 -1.78 16 24 C -0.11 -1.11 9.60 36.01 0.35 -0.76 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 27 H 0.07 0.56 5.95 -51.93 -0.31 0.25 16 28 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 30 H 0.10 1.34 8.09 -51.93 -0.42 0.92 16 31 H 0.10 1.49 8.08 -51.93 -0.42 1.07 16 32 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 33 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.39 10.19 6.33 45.56 0.29 10.48 16 35 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 38 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.58 5.95 -51.93 -0.31 0.27 16 41 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -29.23 344.90 -8.70 -37.93 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -5.35 Total: 12.47 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -3.06 Total: -5.45 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: -0.07 Total: -36.05 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.38 Total: -28.27 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.23 -8.70 -37.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526018486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.756 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds