Wall clock time and date at job start Tue Mar 31 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00138 * 2 1 4 4 C 1.38217 * 119.99992 * 179.79430 * 3 2 1 5 5 C 1.38263 * 119.99622 * 0.42087 * 4 3 2 6 6 C 1.50700 * 119.99552 * 179.81073 * 5 4 3 7 7 C 1.50700 * 109.47363 * 269.72845 * 6 5 4 8 8 O 1.21286 * 119.99450 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00116 * 180.02562 * 7 6 5 10 10 C 1.47066 * 136.05397 * 179.97438 * 9 7 6 11 11 C 1.53503 * 87.98596 * 152.84244 * 10 9 7 12 12 O 1.42897 * 114.20466 * 272.48084 * 11 10 9 13 13 C 1.50701 * 114.20491 * 139.65156 * 11 10 9 14 14 H 1.07990 * 120.00399 * 0.02562 * 13 11 10 15 15 C 1.37879 * 119.99442 * 180.02562 * 13 11 10 16 16 N 1.31517 * 120.00173 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99605 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47160 * 59.99885 * 17 15 13 19 19 H 1.48505 * 109.46723 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47020 * 299.99125 * 17 15 13 21 21 C 1.47060 * 136.06000 * 359.94777 * 9 7 6 22 22 C 1.38210 * 120.00450 * 359.53972 * 5 4 3 23 23 C 1.38221 * 119.99999 * 179.97438 * 2 1 3 24 24 C 1.50707 * 119.99710 * 359.97438 * 23 2 1 25 25 H 1.09005 * 109.46413 * 270.01629 * 1 2 3 26 26 H 1.09000 * 109.47397 * 30.01360 * 1 2 3 27 27 H 1.09000 * 109.47417 * 150.01678 * 1 2 3 28 28 H 1.07994 * 119.99813 * 0.02562 * 3 2 1 29 29 H 1.07994 * 119.99921 * 180.23947 * 4 3 2 30 30 H 1.09004 * 109.47013 * 149.73143 * 6 5 4 31 31 H 1.08998 * 109.47212 * 29.73005 * 6 5 4 32 32 H 1.09000 * 113.46827 * 267.61848 * 10 9 7 33 33 H 1.09003 * 113.47151 * 38.06638 * 10 9 7 34 34 H 0.96701 * 113.99865 * 179.97438 * 12 11 10 35 35 H 0.97003 * 119.99434 * 180.02562 * 16 15 13 36 36 H 1.09007 * 113.46761 * 321.93701 * 21 9 7 37 37 H 1.09003 * 113.46830 * 92.37669 * 21 9 7 38 38 H 1.07991 * 120.00256 * 180.25598 * 22 5 4 39 39 H 1.08997 * 109.47019 * 270.02354 * 24 23 2 40 40 H 1.09001 * 109.46955 * 30.02741 * 24 23 2 41 41 H 1.09001 * 109.46828 * 150.02320 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0043 5 6 4.2717 -0.0002 -0.0002 6 6 5.7787 -0.0002 0.0002 7 6 6.2814 -0.0013 -1.4205 8 8 5.4935 -0.0026 -2.3425 9 7 7.6065 -0.0021 -1.6664 10 6 8.4614 -0.0037 -2.8631 11 6 9.5409 0.6971 -2.0266 12 8 9.4355 2.1220 -2.0092 13 6 10.9409 0.2032 -2.2857 14 1 11.1121 -0.5794 -3.0099 15 6 12.0033 0.7505 -1.5980 16 7 11.7949 1.7040 -0.7164 17 14 13.7388 0.1388 -1.9197 18 1 14.0842 0.3579 -3.3472 19 1 14.6934 0.8837 -1.0599 20 1 13.8184 -1.3109 -1.6079 21 6 8.8339 -0.0011 -0.8563 22 6 3.5807 -1.1971 0.0006 23 6 2.1981 -1.1970 0.0005 24 6 1.4445 -2.5021 0.0017 25 1 -0.3632 0.0003 1.0278 26 1 -0.3634 0.8898 -0.5140 27 1 -0.3634 -0.8901 -0.5136 28 1 1.6583 2.1326 0.0004 29 1 4.1204 2.1325 0.0082 30 1 6.1419 -0.8898 0.5148 31 1 6.1419 0.8902 0.5134 32 1 8.7472 -1.0032 -3.1910 33 1 8.0735 0.6120 -3.6746 34 1 10.1168 2.5604 -1.4811 35 1 12.5424 2.0892 -0.2330 36 1 8.7627 0.6168 0.0389 37 1 9.2188 -0.9999 -0.6502 38 1 4.1206 -2.1323 0.0013 39 1 1.2629 -2.8159 1.0296 40 1 0.4921 -2.3722 -0.5123 41 1 2.0336 -3.2622 -0.5115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526018486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:31 Heat of formation + Delta-G solvation = -51.537115 kcal Electronic energy + Delta-G solvation = -22420.662737 eV Core-core repulsion = 19072.583438 eV Total energy + Delta-G solvation = -3348.079299 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.41969 -40.51396 -39.01981 -35.89135 -35.12156 -34.12812 -33.15944 -31.45236 -29.81886 -28.13469 -27.26470 -26.83596 -25.68977 -23.03648 -22.16122 -21.01006 -19.89689 -19.24121 -17.92894 -17.31974 -17.06758 -16.89411 -16.36241 -16.20324 -15.96152 -15.58317 -15.10609 -14.99947 -14.54033 -14.14768 -14.03708 -13.84255 -13.65205 -13.56242 -13.53701 -13.40279 -12.87381 -12.76968 -12.76342 -12.67335 -12.51817 -12.22517 -12.17417 -11.86440 -11.73909 -11.40768 -10.95397 -10.64971 -10.24203 -9.65428 -9.58406 -9.32478 -8.27506 -6.44627 0.36972 0.48394 1.48777 1.50895 1.58050 1.62658 1.98073 2.40897 2.79952 2.94893 3.58215 3.67071 3.83716 3.85358 4.01241 4.10885 4.15542 4.20695 4.36875 4.46584 4.50472 4.55693 4.62499 4.70574 4.73812 4.80201 4.84236 4.89065 4.92089 4.94096 5.03558 5.04623 5.23750 5.26512 5.38508 5.52507 5.66636 5.72628 5.74455 5.90774 6.15050 6.60984 6.88067 7.14599 7.29436 7.48831 8.78462 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.040180 B = 0.003052 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.691311 B = 9170.724880 C = 9358.086145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.125 4.125 4 C -0.128 4.128 5 C -0.080 4.080 6 C -0.086 4.086 7 C 0.532 3.468 8 O -0.592 6.592 9 N -0.639 5.639 10 C 0.105 3.895 11 C 0.219 3.781 12 O -0.587 6.587 13 C -0.553 4.553 14 H 0.074 0.926 15 C 0.032 3.968 16 N -0.917 5.917 17 Si 0.971 3.029 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.266 1.266 21 C 0.086 3.914 22 C -0.119 4.119 23 C -0.099 4.099 24 C -0.113 4.113 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.140 0.860 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.049 0.951 34 H 0.389 0.611 35 H 0.277 0.723 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.472 -5.632 6.516 17.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.143 4.143 4 C -0.146 4.146 5 C -0.081 4.081 6 C -0.125 4.125 7 C 0.323 3.677 8 O -0.474 6.474 9 N -0.372 5.372 10 C -0.018 4.018 11 C 0.177 3.823 12 O -0.400 6.400 13 C -0.591 4.591 14 H 0.092 0.908 15 C -0.168 4.168 16 N -0.558 5.558 17 Si 0.796 3.204 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.037 4.037 22 C -0.137 4.137 23 C -0.099 4.099 24 C -0.169 4.169 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.157 0.843 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.067 0.933 34 H 0.245 0.755 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.142 0.858 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.531 -5.627 5.846 18.415 hybrid contribution 1.789 0.241 0.072 1.807 sum -14.742 -5.386 5.917 16.773 Atomic orbital electron populations 1.20887 0.88984 1.03656 1.03286 1.20149 0.97692 0.92250 0.99882 1.21236 0.93540 0.98742 1.00757 1.21153 0.95271 0.97397 1.00801 1.19402 0.93541 0.94298 1.00851 1.20564 0.93112 1.06400 0.92422 1.20696 0.79507 0.75294 0.92182 1.90631 1.55104 1.53508 1.48125 1.49802 1.03861 1.71028 1.12494 1.23327 0.87991 1.00454 0.89985 1.19816 0.91842 0.79463 0.91136 1.86034 1.58426 1.19797 1.75735 1.21628 0.91320 1.21734 1.24444 0.90757 1.25773 1.03352 0.94340 0.93353 1.69319 1.33861 1.26757 1.25839 0.85404 0.78205 0.78743 0.78067 1.20082 1.20782 1.19081 1.24027 0.80422 1.01518 0.97693 1.21042 0.94482 0.97299 1.00890 1.20086 0.93250 0.96527 0.99991 1.20886 1.00201 0.92497 1.03287 0.89841 0.91004 0.90182 0.84252 0.86391 0.86276 0.87388 0.87948 0.93285 0.75464 0.91309 0.91609 0.88568 0.85764 0.89744 0.89840 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 9.60 71.24 0.68 -1.02 16 2 C -0.10 -2.31 5.88 -19.86 -0.12 -2.43 16 3 C -0.12 -3.17 9.70 22.27 0.22 -2.96 16 4 C -0.13 -3.82 9.70 22.27 0.22 -3.61 16 5 C -0.08 -2.51 4.37 -19.87 -0.09 -2.59 16 6 C -0.09 -2.70 5.66 29.10 0.16 -2.54 16 7 C 0.53 21.91 8.07 87.66 0.71 22.61 16 8 O -0.59 -28.46 16.81 -3.05 -0.05 -28.51 16 9 N -0.64 -27.05 3.69 -858.71 -3.17 -30.22 16 10 C 0.11 4.68 8.03 83.18 0.67 5.34 16 11 C 0.22 10.48 1.58 -11.20 -0.02 10.47 16 12 O -0.59 -30.80 13.54 -148.98 -2.02 -32.82 16 13 C -0.55 -27.26 8.69 25.60 0.22 -27.03 16 14 H 0.07 3.53 7.81 -2.92 -0.02 3.51 16 15 C 0.03 1.57 5.40 84.65 0.46 2.02 16 16 N -0.92 -45.66 11.01 21.45 0.24 -45.42 16 17 Si 0.97 38.70 29.54 68.60 2.03 40.73 16 18 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 19 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 21 C 0.09 3.59 7.84 83.19 0.65 4.24 16 22 C -0.12 -3.37 9.36 22.27 0.21 -3.17 16 23 C -0.10 -2.40 5.88 -19.86 -0.12 -2.52 16 24 C -0.11 -1.91 9.60 71.24 0.68 -1.22 16 25 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 27 H 0.08 1.04 5.95 -2.39 -0.01 1.02 16 28 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 29 H 0.12 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.12 3.16 8.09 -2.38 -0.02 3.14 16 31 H 0.11 3.19 8.08 -2.39 -0.02 3.17 16 32 H 0.10 4.10 8.10 -2.39 -0.02 4.08 16 33 H 0.05 2.29 8.14 -2.39 -0.02 2.28 16 34 H 0.39 20.59 6.33 -74.06 -0.47 20.12 16 35 H 0.28 13.07 8.31 -92.71 -0.77 12.30 16 36 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 37 H 0.10 3.70 8.10 -2.39 -0.02 3.68 16 38 H 0.12 3.20 8.06 -2.92 -0.02 3.18 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.16 5.95 -2.39 -0.01 1.14 16 41 H 0.06 1.10 8.09 -2.39 -0.02 1.08 16 Total: -1.00 -62.31 344.90 2.13 -60.18 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: 0.57 Total: 40.45 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 4.54 Total: -4.39 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -2.93 Total: -75.64 kcal Atomic # 8 Polarization: -59.26 SS G_CDS: -2.07 Total: -61.33 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Total: -62.31 2.13 -60.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526018486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.640 kcal (2) G-P(sol) polarization free energy of solvation -62.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds