Wall clock time and date at job start Tue Mar 31 2020 06:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.99830 * 2 1 4 4 O 1.42902 * 109.47093 * 64.64172 * 3 2 1 5 5 C 1.54319 * 109.98564 * 238.97604 * 2 1 3 6 6 C 1.55158 * 102.86112 * 263.04869 * 5 2 1 7 7 C 1.54917 * 101.57863 * 324.30070 * 6 5 2 8 8 N 1.47011 * 109.88573 * 121.09515 * 2 1 3 9 9 C 1.34779 * 125.65323 * 300.51361 * 8 2 1 10 10 O 1.21548 * 119.99516 * 357.45048 * 9 8 2 11 11 C 1.47884 * 120.00626 * 177.44482 * 9 8 2 12 12 C 1.39921 * 120.02492 * 206.37624 * 11 9 8 13 13 C 1.38334 * 120.35313 * 179.74837 * 12 11 9 14 14 C 1.37750 * 120.41514 * 359.97438 * 13 12 11 15 15 C 1.40745 * 120.03784 * 0.02562 * 14 13 12 16 16 C 1.41437 * 120.17646 * 179.97438 * 15 14 13 17 17 H 1.08006 * 120.00007 * 207.67338 * 16 15 14 18 18 C 1.39934 * 120.00395 * 27.66428 * 16 15 14 19 19 N 1.30829 * 119.99490 * 11.45210 * 18 16 15 20 20 Si 1.86798 * 120.00538 * 191.45231 * 18 16 15 21 21 H 1.48494 * 109.46925 * 59.99917 * 20 18 16 22 22 H 1.48497 * 109.47277 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47069 * 300.00341 * 20 18 16 24 24 C 1.38996 * 120.02042 * 26.09151 * 11 9 8 25 25 H 1.09002 * 109.46762 * 300.35740 * 1 2 3 26 26 H 1.08998 * 109.47497 * 60.35394 * 1 2 3 27 27 H 1.08996 * 109.47433 * 180.35844 * 1 2 3 28 28 H 1.08996 * 109.47113 * 184.64698 * 3 2 1 29 29 H 1.09004 * 109.46745 * 304.64477 * 3 2 1 30 30 H 0.96700 * 113.99947 * 179.97438 * 4 3 2 31 31 H 1.08993 * 110.92728 * 144.62857 * 5 2 1 32 32 H 1.08998 * 110.73859 * 21.37348 * 5 2 1 33 33 H 1.09001 * 111.00223 * 206.22953 * 6 5 2 34 34 H 1.09000 * 111.04020 * 82.39009 * 6 5 2 35 35 H 1.08995 * 110.36784 * 278.17257 * 7 6 5 36 36 H 1.08997 * 110.45535 * 155.89503 * 7 6 5 37 37 H 1.07995 * 119.82303 * 359.71799 * 12 11 9 38 38 H 1.08001 * 119.78542 * 179.97438 * 13 12 11 39 39 H 1.08001 * 119.98115 * 179.97438 * 14 13 12 40 40 H 0.97007 * 119.99919 * 179.97438 * 19 18 16 41 41 H 1.07991 * 120.20322 * 0.28447 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0533 1.4378 0.0000 4 8 1.6739 2.0828 1.2175 5 6 2.0574 -0.7475 -1.2428 6 6 2.3475 -2.1692 -0.6934 7 6 2.8523 -1.8530 0.7366 8 7 2.0300 -0.7140 1.1838 9 6 1.7744 -0.3853 2.4657 10 8 1.1137 0.6029 2.7194 11 6 2.2975 -1.2269 3.5634 12 6 1.6367 -1.2596 4.7964 13 6 2.1172 -2.0484 5.8262 14 6 3.2507 -2.8110 5.6500 15 6 3.9287 -2.7909 4.4168 16 6 5.0931 -3.5724 4.2328 17 1 5.8470 -3.2599 3.5253 18 6 5.2687 -4.7502 4.9677 19 7 4.2717 -5.2485 5.6526 20 14 6.9265 -5.6110 4.9707 21 1 7.9600 -4.6927 5.5126 22 1 6.8514 -6.8270 5.8197 23 1 7.2863 -5.9971 3.5827 24 6 3.4425 -1.9905 3.3692 25 1 -0.3633 0.5194 0.8868 26 1 -0.3634 0.5083 -0.8931 27 1 -0.3634 -1.0276 0.0064 28 1 3.1400 1.4289 -0.0833 29 1 1.6285 1.9790 -0.8455 30 1 1.9732 2.9997 1.2866 31 1 2.9706 -0.2848 -1.6169 32 1 1.2973 -0.7833 -2.0231 33 1 3.1212 -2.6645 -1.2802 34 1 1.4385 -2.7700 -0.6630 35 1 3.9059 -1.5745 0.7141 36 1 2.7012 -2.7105 1.3923 37 1 0.7473 -0.6654 4.9450 38 1 1.6002 -2.0664 6.7743 39 1 3.6199 -3.4240 6.4589 40 1 4.3932 -6.0653 6.1618 41 1 3.9556 -1.9683 2.4192 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546822103.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:47 Heat of formation + Delta-G solvation = -53.654994 kcal Electronic energy + Delta-G solvation = -23735.124974 eV Core-core repulsion = 20386.953837 eV Total energy + Delta-G solvation = -3348.171137 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.15285 -37.73651 -36.50930 -35.90979 -33.60770 -32.13909 -30.97266 -29.85347 -29.17566 -26.52571 -25.38499 -25.00899 -23.10756 -21.62855 -20.88094 -20.00098 -18.26830 -17.18938 -16.85464 -16.00173 -15.84261 -15.38305 -14.82190 -14.69760 -14.32818 -13.92978 -13.50532 -13.27784 -13.03066 -12.89960 -12.42043 -12.36604 -12.30744 -12.07652 -11.74356 -11.61054 -11.36079 -11.22077 -11.16351 -10.80125 -10.68913 -10.62363 -10.48887 -10.44938 -10.03336 -9.66181 -9.39539 -9.23408 -8.73103 -8.05841 -7.54791 -7.40174 -6.73608 -4.42007 2.39598 2.78158 3.05249 3.07535 3.16623 3.50925 3.89884 3.97787 4.34022 4.59003 4.66343 4.84070 5.04871 5.21239 5.32112 5.42804 5.51729 5.59439 5.63084 5.68988 5.71994 5.75723 5.97350 6.00493 6.11552 6.20725 6.23879 6.28299 6.48364 6.53672 6.81712 6.91818 6.98375 7.09762 7.24462 7.45328 7.73542 7.93608 7.96166 7.98248 8.15282 8.25948 8.55763 8.84317 8.87923 9.12229 10.20545 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020899 B = 0.004927 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.452215 B = 5681.893576 C = 6486.072468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.166 3.834 3 C 0.069 3.931 4 O -0.522 6.522 5 C -0.123 4.123 6 C -0.135 4.135 7 C 0.096 3.904 8 N -0.609 5.609 9 C 0.575 3.425 10 O -0.508 6.508 11 C -0.112 4.112 12 C -0.175 4.175 13 C -0.118 4.118 14 C -0.136 4.136 15 C 0.099 3.901 16 C -0.465 4.465 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.804 5.804 20 Si 0.910 3.090 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.199 4.199 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.356 0.644 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.280 0.720 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.641 5.130 -11.841 13.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.081 3.919 3 C -0.010 4.010 4 O -0.324 6.324 5 C -0.161 4.161 6 C -0.173 4.173 7 C -0.027 4.027 8 N -0.346 5.346 9 C 0.366 3.634 10 O -0.383 6.383 11 C -0.115 4.115 12 C -0.195 4.195 13 C -0.136 4.136 14 C -0.156 4.156 15 C 0.096 3.904 16 C -0.495 4.495 17 H 0.094 0.906 18 C -0.142 4.142 19 N -0.431 5.431 20 Si 0.735 3.265 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.218 4.218 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.201 0.799 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.142 0.858 40 H 0.091 0.909 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.356 4.893 -11.330 12.564 hybrid contribution 1.095 -0.048 -0.176 1.110 sum -1.261 4.845 -11.506 12.548 Atomic orbital electron populations 1.22071 0.94134 1.01909 1.02867 1.20902 0.94701 0.90444 0.85857 1.22544 0.97442 0.93172 0.87855 1.87209 1.79757 1.28426 1.37009 1.22664 1.01491 0.96014 0.95913 1.22842 1.02023 0.96184 0.96231 1.22683 0.94530 0.90682 0.94845 1.48407 1.51896 1.29825 1.04438 1.18492 0.79507 0.84512 0.80863 1.90705 1.39063 1.26149 1.82419 1.19361 0.98519 1.00092 0.93565 1.20433 1.01882 1.04021 0.93170 1.20694 0.97643 0.98091 0.97209 1.21600 0.96224 0.99714 0.98044 1.17563 0.92332 0.90323 0.90147 1.19471 1.04020 1.05274 1.20757 0.90585 1.25856 0.97781 0.97129 0.93430 1.69769 1.31013 1.18565 1.23706 0.86336 0.82322 0.78674 0.79169 1.18956 1.20393 1.19079 1.21716 0.97915 1.03201 0.99012 0.90264 0.92693 0.92762 0.94333 0.94003 0.79917 0.90673 0.90137 0.89969 0.90645 0.91550 0.88586 0.88417 0.88769 0.85837 0.90884 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.28 37.16 0.31 -1.89 16 2 C 0.17 2.39 0.79 -130.85 -0.10 2.29 16 3 C 0.07 0.95 6.03 37.16 0.22 1.17 16 4 O -0.52 -8.62 9.26 -60.09 -0.56 -9.18 16 5 C -0.12 -1.32 6.01 -24.90 -0.15 -1.47 16 6 C -0.13 -1.56 7.08 -24.58 -0.17 -1.74 16 7 C 0.10 1.49 5.01 -2.52 -0.01 1.48 16 8 N -0.61 -10.83 2.82 -156.89 -0.44 -11.27 16 9 C 0.57 12.54 7.06 -12.31 -0.09 12.46 16 10 O -0.51 -11.96 12.24 -19.53 -0.24 -12.20 16 11 C -0.11 -2.65 5.70 -105.04 -0.60 -3.25 16 12 C -0.17 -4.18 9.60 -38.92 -0.37 -4.55 16 13 C -0.12 -2.80 10.01 -39.72 -0.40 -3.20 16 14 C -0.14 -3.49 8.66 -38.81 -0.34 -3.83 16 15 C 0.10 2.54 5.56 -106.87 -0.59 1.95 16 16 C -0.46 -11.83 9.06 -37.73 -0.34 -12.18 16 17 H 0.08 1.84 7.87 -52.48 -0.41 1.43 16 18 C 0.07 1.81 5.25 -17.34 -0.09 1.72 16 19 N -0.80 -20.28 10.80 55.55 0.60 -19.68 16 20 Si 0.91 18.20 29.57 -169.99 -5.03 13.17 16 21 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 24 C -0.20 -4.70 7.68 -38.44 -0.30 -4.99 16 25 H 0.08 1.41 6.53 -51.93 -0.34 1.07 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.51 8.06 -51.93 -0.42 0.09 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.36 4.32 9.12 45.56 0.42 4.74 16 31 H 0.07 0.71 7.80 -51.93 -0.40 0.31 16 32 H 0.08 0.72 7.84 -51.93 -0.41 0.31 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.01 7.23 -51.93 -0.38 0.63 16 36 H 0.10 1.71 6.21 -51.93 -0.32 1.39 16 37 H 0.10 2.26 7.85 -52.49 -0.41 1.85 16 38 H 0.09 1.99 8.06 -52.49 -0.42 1.57 16 39 H 0.12 3.25 6.15 -52.49 -0.32 2.93 16 40 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 41 H 0.11 2.38 4.50 -52.49 -0.24 2.14 16 LS Contribution 324.00 15.07 4.88 4.88 Total: -1.00 -30.35 324.00 -8.71 -39.06 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -4.91 Total: 11.24 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -3.02 Total: -16.03 kcal Atomic # 7 Polarization: -31.11 SS G_CDS: 0.16 Total: -30.95 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.80 Total: -21.38 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.35 -8.71 -39.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546822103.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.595 kcal (2) G-P(sol) polarization free energy of solvation -30.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds