Wall clock time and date at job start Tue Mar 31 2020 06:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.99830 * 2 1 4 4 O 1.42902 * 109.47093 * 64.64172 * 3 2 1 5 5 C 1.54319 * 109.98564 * 238.97604 * 2 1 3 6 6 C 1.55158 * 102.86112 * 263.04869 * 5 2 1 7 7 C 1.54917 * 101.57863 * 324.30070 * 6 5 2 8 8 N 1.47011 * 109.88573 * 121.09515 * 2 1 3 9 9 C 1.34779 * 125.65323 * 300.51361 * 8 2 1 10 10 O 1.21548 * 119.99516 * 357.45048 * 9 8 2 11 11 C 1.47884 * 120.00626 * 177.44482 * 9 8 2 12 12 C 1.39921 * 120.02492 * 206.37624 * 11 9 8 13 13 C 1.38334 * 120.35313 * 179.74837 * 12 11 9 14 14 C 1.37750 * 120.41514 * 359.97438 * 13 12 11 15 15 C 1.40745 * 120.03784 * 0.02562 * 14 13 12 16 16 C 1.41437 * 120.17646 * 179.97438 * 15 14 13 17 17 H 1.08006 * 120.00007 * 207.67338 * 16 15 14 18 18 C 1.39934 * 120.00395 * 27.66428 * 16 15 14 19 19 N 1.30829 * 119.99490 * 11.45210 * 18 16 15 20 20 Si 1.86798 * 120.00538 * 191.45231 * 18 16 15 21 21 H 1.48494 * 109.46925 * 59.99917 * 20 18 16 22 22 H 1.48497 * 109.47277 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47069 * 300.00341 * 20 18 16 24 24 C 1.38996 * 120.02042 * 26.09151 * 11 9 8 25 25 H 1.09002 * 109.46762 * 300.35740 * 1 2 3 26 26 H 1.08998 * 109.47497 * 60.35394 * 1 2 3 27 27 H 1.08996 * 109.47433 * 180.35844 * 1 2 3 28 28 H 1.08996 * 109.47113 * 184.64698 * 3 2 1 29 29 H 1.09004 * 109.46745 * 304.64477 * 3 2 1 30 30 H 0.96700 * 113.99947 * 179.97438 * 4 3 2 31 31 H 1.08993 * 110.92728 * 144.62857 * 5 2 1 32 32 H 1.08998 * 110.73859 * 21.37348 * 5 2 1 33 33 H 1.09001 * 111.00223 * 206.22953 * 6 5 2 34 34 H 1.09000 * 111.04020 * 82.39009 * 6 5 2 35 35 H 1.08995 * 110.36784 * 278.17257 * 7 6 5 36 36 H 1.08997 * 110.45535 * 155.89503 * 7 6 5 37 37 H 1.07995 * 119.82303 * 359.71799 * 12 11 9 38 38 H 1.08001 * 119.78542 * 179.97438 * 13 12 11 39 39 H 1.08001 * 119.98115 * 179.97438 * 14 13 12 40 40 H 0.97007 * 119.99919 * 179.97438 * 19 18 16 41 41 H 1.07991 * 120.20322 * 0.28447 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0533 1.4378 0.0000 4 8 1.6739 2.0828 1.2175 5 6 2.0574 -0.7475 -1.2428 6 6 2.3475 -2.1692 -0.6934 7 6 2.8523 -1.8530 0.7366 8 7 2.0300 -0.7140 1.1838 9 6 1.7744 -0.3853 2.4657 10 8 1.1137 0.6029 2.7194 11 6 2.2975 -1.2269 3.5634 12 6 1.6367 -1.2596 4.7964 13 6 2.1172 -2.0484 5.8262 14 6 3.2507 -2.8110 5.6500 15 6 3.9287 -2.7909 4.4168 16 6 5.0931 -3.5724 4.2328 17 1 5.8470 -3.2599 3.5253 18 6 5.2687 -4.7502 4.9677 19 7 4.2717 -5.2485 5.6526 20 14 6.9265 -5.6110 4.9707 21 1 7.9600 -4.6927 5.5126 22 1 6.8514 -6.8270 5.8197 23 1 7.2863 -5.9971 3.5827 24 6 3.4425 -1.9905 3.3692 25 1 -0.3633 0.5194 0.8868 26 1 -0.3634 0.5083 -0.8931 27 1 -0.3634 -1.0276 0.0064 28 1 3.1400 1.4289 -0.0833 29 1 1.6285 1.9790 -0.8455 30 1 1.9732 2.9997 1.2866 31 1 2.9706 -0.2848 -1.6169 32 1 1.2973 -0.7833 -2.0231 33 1 3.1212 -2.6645 -1.2802 34 1 1.4385 -2.7700 -0.6630 35 1 3.9059 -1.5745 0.7141 36 1 2.7012 -2.7105 1.3923 37 1 0.7473 -0.6654 4.9450 38 1 1.6002 -2.0664 6.7743 39 1 3.6199 -3.4240 6.4589 40 1 4.3932 -6.0653 6.1618 41 1 3.9556 -1.9683 2.4192 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546822103.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:47 Heat of formation + Delta-G solvation = -71.653400 kcal Electronic energy + Delta-G solvation = -23735.905444 eV Core-core repulsion = 20386.953837 eV Total energy + Delta-G solvation = -3348.951607 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51489 -39.39137 -38.17950 -37.08366 -35.47331 -33.52254 -32.12420 -31.75877 -30.91262 -27.62632 -27.21377 -26.26159 -24.63529 -22.96683 -22.60349 -21.55883 -19.76752 -18.73364 -18.11035 -17.40932 -17.29439 -17.06454 -16.50622 -16.27782 -15.54592 -15.34555 -15.07277 -14.68540 -14.58756 -14.26722 -14.06638 -13.72716 -13.44376 -13.39581 -13.30079 -12.98151 -12.83041 -12.80108 -12.51369 -12.47224 -12.19370 -12.06854 -11.81150 -11.64311 -11.53409 -11.20290 -11.06487 -10.74159 -10.41981 -9.50772 -9.44620 -9.28788 -8.58189 -6.37142 0.53887 0.94503 1.42233 1.52163 1.54137 2.13145 2.19854 2.27000 2.81846 3.34554 3.54768 3.69478 3.81176 4.01022 4.09061 4.21121 4.28454 4.39021 4.46732 4.51970 4.59408 4.61160 4.69023 4.85188 4.91602 4.92174 4.98614 5.04496 5.05534 5.13763 5.18219 5.28545 5.32404 5.40034 5.52332 5.73228 5.86519 6.02612 6.04428 6.23339 6.62781 6.70415 6.92191 6.95726 7.03276 7.49552 8.37958 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020899 B = 0.004927 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.452215 B = 5681.893576 C = 6486.072468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.150 3.850 3 C 0.066 3.934 4 O -0.557 6.557 5 C -0.110 4.110 6 C -0.124 4.124 7 C 0.086 3.914 8 N -0.606 5.606 9 C 0.568 3.432 10 O -0.533 6.533 11 C -0.121 4.121 12 C -0.192 4.192 13 C -0.116 4.116 14 C -0.162 4.162 15 C 0.072 3.928 16 C -0.492 4.492 17 H 0.082 0.918 18 C 0.034 3.966 19 N -0.833 5.833 20 Si 0.984 3.016 21 H -0.263 1.263 22 H -0.272 1.272 23 H -0.256 1.256 24 C -0.196 4.196 25 H 0.038 0.962 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.371 0.629 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.287 0.713 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.591 4.865 -14.641 15.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.066 3.934 3 C -0.013 4.013 4 O -0.362 6.362 5 C -0.147 4.147 6 C -0.162 4.162 7 C -0.036 4.036 8 N -0.341 5.341 9 C 0.358 3.642 10 O -0.411 6.411 11 C -0.124 4.124 12 C -0.212 4.212 13 C -0.134 4.134 14 C -0.182 4.182 15 C 0.070 3.930 16 C -0.521 4.521 17 H 0.100 0.900 18 C -0.180 4.180 19 N -0.460 5.460 20 Si 0.805 3.195 21 H -0.187 1.187 22 H -0.196 1.196 23 H -0.180 1.180 24 C -0.216 4.216 25 H 0.058 0.942 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.218 0.782 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.098 0.902 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.310 4.634 -14.172 14.968 hybrid contribution 0.707 0.066 0.663 0.971 sum -0.604 4.700 -13.509 14.316 Atomic orbital electron populations 1.22013 0.94386 1.01541 1.02510 1.21400 0.94733 0.91353 0.85884 1.22703 0.97906 0.92761 0.87946 1.87163 1.80322 1.29853 1.38835 1.22702 1.03184 0.94341 0.94498 1.22827 1.02743 0.97209 0.93411 1.22788 0.94787 0.88977 0.97084 1.48407 1.51131 1.30375 1.04165 1.18233 0.79719 0.84123 0.82084 1.90689 1.40186 1.26978 1.83225 1.19741 0.98334 0.99903 0.94428 1.20599 1.02331 1.04508 0.93739 1.20894 0.97118 0.97276 0.98152 1.21572 0.97547 1.01022 0.98052 1.17948 0.93079 0.91174 0.90772 1.19756 1.04310 1.06139 1.21926 0.90028 1.26733 1.01411 0.97381 0.92435 1.69842 1.33042 1.19106 1.23975 0.85212 0.77170 0.77471 0.79633 1.18714 1.19614 1.18006 1.21904 0.97880 1.02534 0.99287 0.94242 0.89397 0.93058 0.93861 0.90706 0.78248 0.88593 0.87248 0.87115 0.90688 0.91038 0.91478 0.88163 0.86626 0.87092 0.90217 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 8.28 71.98 0.60 -3.39 16 2 C 0.15 3.98 0.79 3.96 0.00 3.98 16 3 C 0.07 1.63 6.03 71.98 0.43 2.06 16 4 O -0.56 -18.12 9.26 -125.21 -1.16 -19.28 16 5 C -0.11 -1.87 6.01 31.78 0.19 -1.68 16 6 C -0.12 -2.46 7.08 31.99 0.23 -2.24 16 7 C 0.09 2.58 5.01 86.86 0.44 3.02 16 8 N -0.61 -21.17 2.82 -768.57 -2.17 -23.33 16 9 C 0.57 25.28 7.06 86.80 0.61 25.89 16 10 O -0.53 -25.75 12.24 19.90 0.24 -25.51 16 11 C -0.12 -5.88 5.70 -20.13 -0.11 -6.00 16 12 C -0.19 -9.48 9.60 22.70 0.22 -9.27 16 13 C -0.12 -5.71 10.01 22.18 0.22 -5.49 16 14 C -0.16 -8.64 8.66 22.77 0.20 -8.44 16 15 C 0.07 3.86 5.56 -21.32 -0.12 3.74 16 16 C -0.49 -25.41 9.06 23.47 0.21 -25.20 16 17 H 0.08 3.98 7.87 -2.91 -0.02 3.95 16 18 C 0.03 1.67 5.25 85.25 0.45 2.12 16 19 N -0.83 -42.67 10.80 21.82 0.24 -42.44 16 20 Si 0.98 36.83 29.57 68.60 2.03 38.86 16 21 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 22 H -0.27 -9.75 7.11 99.48 0.71 -9.05 16 23 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 24 C -0.20 -9.54 7.68 23.01 0.18 -9.37 16 25 H 0.04 1.40 6.53 -2.39 -0.02 1.38 16 26 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.04 1.02 8.06 -2.39 -0.02 1.00 16 29 H 0.07 1.36 8.14 -2.38 -0.02 1.35 16 30 H 0.37 8.84 9.12 -74.06 -0.68 8.17 16 31 H 0.10 1.31 7.80 -2.39 -0.02 1.29 16 32 H 0.11 1.32 7.84 -2.39 -0.02 1.30 16 33 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 2.07 7.23 -2.39 -0.02 2.05 16 36 H 0.07 2.41 6.21 -2.39 -0.01 2.39 16 37 H 0.10 4.82 7.85 -2.91 -0.02 4.80 16 38 H 0.12 5.01 8.06 -2.91 -0.02 4.98 16 39 H 0.11 6.10 6.15 -2.91 -0.02 6.08 16 40 H 0.29 13.39 8.30 -92.70 -0.77 12.62 16 41 H 0.13 5.60 4.50 -2.92 -0.01 5.59 16 Total: -1.00 -68.48 324.00 3.29 -65.19 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: 0.37 Total: 36.75 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 3.74 Total: -30.25 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: -1.93 Total: -65.77 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -0.92 Total: -44.78 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Total: -68.48 3.29 -65.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546822103.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.465 kcal (2) G-P(sol) polarization free energy of solvation -68.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds