Wall clock time and date at job start Tue Mar 31 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 112.85153 * 2 1 4 4 C 1.53789 * 113.61038 * 131.19655 * 2 1 3 5 5 C 1.53780 * 87.07893 * 89.11518 * 4 2 1 6 6 C 1.53006 * 113.61053 * 139.97929 * 5 4 2 7 7 N 1.46500 * 109.46998 * 176.52669 * 6 5 4 8 8 S 1.65598 * 120.00283 * 165.00335 * 7 6 5 9 9 O 1.42094 * 104.27707 * 181.07506 * 8 7 6 10 10 O 1.42105 * 104.27318 * 308.92704 * 8 7 6 11 11 C 1.81396 * 104.44859 * 64.99645 * 8 7 6 12 12 C 1.53000 * 109.46947 * 180.02562 * 11 8 7 13 13 C 1.52997 * 109.47296 * 180.02562 * 12 11 8 14 14 C 1.50703 * 109.47381 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99995 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00115 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99941 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99909 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47417 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47184 * 120.00417 * 18 16 14 21 21 H 1.48503 * 109.47041 * 239.99881 * 18 16 14 22 22 C 1.53777 * 87.17394 * 25.38935 * 5 4 2 23 23 H 1.09007 * 109.47013 * 288.80594 * 1 2 3 24 24 H 1.08998 * 109.47014 * 48.80014 * 1 2 3 25 25 H 1.08998 * 109.47348 * 168.80291 * 1 2 3 26 26 H 1.08999 * 109.46898 * 191.19448 * 3 2 1 27 27 H 1.08997 * 109.47016 * 311.19487 * 3 2 1 28 28 H 1.08996 * 109.46824 * 71.19568 * 3 2 1 29 29 H 1.08992 * 113.61445 * 334.56320 * 4 2 1 30 30 H 1.09001 * 113.61082 * 203.66197 * 4 2 1 31 31 H 1.08998 * 113.61602 * 270.79563 * 5 4 2 32 32 H 1.08993 * 109.46955 * 296.52894 * 6 5 4 33 33 H 1.09000 * 109.47050 * 56.52723 * 6 5 4 34 34 H 0.97004 * 119.99709 * 345.00122 * 7 6 5 35 35 H 1.09001 * 109.47447 * 299.99994 * 11 8 7 36 36 H 1.08995 * 109.47186 * 60.00947 * 11 8 7 37 37 H 1.09003 * 109.47488 * 300.00623 * 12 11 8 38 38 H 1.09006 * 109.46963 * 60.00224 * 12 11 8 39 39 H 1.09001 * 109.47206 * 299.99887 * 13 12 11 40 40 H 1.08997 * 109.46744 * 60.00223 * 13 12 11 41 41 H 0.97002 * 119.99587 * 179.97438 * 17 16 14 42 42 H 1.08999 * 113.61825 * 89.16304 * 22 5 4 43 43 H 1.09009 * 113.61337 * 220.05752 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9281 1.0603 5 6 2.0929 -2.0426 0.0020 6 6 3.3264 -2.9479 0.0029 7 7 3.1450 -4.0213 -0.9774 8 16 4.4436 -4.9262 -1.4642 9 8 3.9026 -5.8315 -2.4166 10 8 5.4198 -3.9643 -1.8400 11 6 4.9646 -5.8112 0.0310 12 6 6.1729 -6.6922 -0.2928 13 6 6.6121 -7.4391 0.9682 14 6 7.8026 -8.3064 0.6494 15 1 8.2060 -8.3229 -0.3523 16 6 8.3775 -9.0781 1.6368 17 7 7.8866 -9.0577 2.8567 18 14 9.8536 -10.1525 1.2418 19 1 10.2098 -9.9969 -0.1915 20 1 11.0049 -9.7415 2.0849 21 1 9.5200 -11.5730 1.5181 22 6 2.1448 -0.9318 -1.0601 23 1 -0.3633 0.3313 0.9729 24 1 -0.3633 0.6769 -0.7732 25 1 -0.3634 -1.0081 -0.1995 26 1 3.1943 1.3532 -0.1995 27 1 1.6416 2.0076 -0.7733 28 1 1.9600 1.8733 0.9728 29 1 1.4945 -1.1068 1.9156 30 1 3.1590 -0.6487 1.3496 31 1 1.1573 -2.6019 0.0035 32 1 4.2073 -2.3618 -0.2587 33 1 3.4590 -3.3802 0.9947 34 1 2.2641 -4.2020 -1.3413 35 1 5.2367 -5.0914 0.8030 36 1 4.1452 -6.4349 0.3882 37 1 5.9013 -7.4119 -1.0650 38 1 6.9923 -6.0682 -0.6498 39 1 6.8836 -6.7197 1.7406 40 1 5.7926 -8.0631 1.3247 41 1 8.2909 -9.6009 3.5513 42 1 3.1575 -0.6534 -1.3517 43 1 1.4923 -1.1135 -1.9143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548702358.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:19 Heat of formation + Delta-G solvation = -87.493393 kcal Electronic energy + Delta-G solvation = -20999.942936 eV Core-core repulsion = 17785.748407 eV Total energy + Delta-G solvation = -3214.194529 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.14369 -36.86960 -35.74496 -35.20804 -34.66256 -32.18351 -31.02174 -27.80350 -27.76751 -26.16117 -25.89197 -23.72038 -21.28490 -20.61506 -19.21128 -18.50380 -17.33264 -16.73450 -16.40759 -15.78135 -15.51707 -15.10362 -14.74091 -14.48377 -14.36585 -14.03196 -13.93147 -13.25139 -13.03571 -12.60193 -12.36358 -12.26467 -12.14922 -12.00902 -11.92111 -11.80635 -11.75345 -11.67388 -11.27486 -11.11368 -10.93609 -10.83975 -10.82100 -10.42106 -10.35773 -10.30462 -9.95162 -9.62880 -9.29129 -9.05619 -8.41247 -6.05971 -4.08846 0.49873 2.88645 3.29348 3.36872 3.41935 3.97042 4.14055 4.28310 4.31557 4.37753 4.42590 4.52443 4.80637 4.99822 5.07533 5.12834 5.21151 5.26746 5.30308 5.30752 5.37240 5.44894 5.53022 5.54205 5.59174 5.61081 5.70433 5.78345 5.87041 5.88803 5.92481 6.14189 6.26194 6.27622 6.45747 6.87425 6.94580 7.57189 7.66984 7.92360 8.32902 8.97704 9.55951 11.05337 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029490 B = 0.002853 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.251372 B = 9810.303489 C =10274.427498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.092 4.092 3 C -0.136 4.136 4 C -0.125 4.125 5 C -0.116 4.116 6 C 0.123 3.877 7 N -1.123 6.123 8 S 2.601 3.399 9 O -0.965 6.965 10 O -0.963 6.963 11 C -0.609 4.609 12 C -0.106 4.106 13 C 0.030 3.970 14 C -0.525 4.525 15 H 0.059 0.941 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.128 4.128 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.414 0.586 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.261 0.739 42 H 0.086 0.914 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.632 18.622 -3.621 24.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.092 4.092 3 C -0.193 4.193 4 C -0.163 4.163 5 C -0.135 4.135 6 C -0.004 4.004 7 N -0.881 5.881 8 S 2.697 3.303 9 O -0.956 6.956 10 O -0.953 6.953 11 C -0.741 4.741 12 C -0.145 4.145 13 C -0.008 4.008 14 C -0.563 4.563 15 H 0.077 0.923 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.165 4.165 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.247 0.753 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.075 18.600 -4.271 24.320 hybrid contribution 0.272 -0.877 0.559 1.075 sum -14.802 17.723 -3.712 23.388 Atomic orbital electron populations 1.21597 0.93269 1.01898 1.01768 1.21826 0.95489 0.94617 0.97301 1.21731 1.00677 0.95367 1.01565 1.23076 1.01653 0.95166 0.96410 1.22701 0.98218 0.94708 0.97907 1.21354 0.98969 0.88464 0.91591 1.55664 1.26121 1.47783 1.58581 1.05250 0.73572 0.74464 0.77003 1.93573 1.77741 1.65787 1.58466 1.93562 1.60811 1.59576 1.81374 1.30542 1.10337 1.13041 1.20176 1.21499 0.92547 0.97398 1.03104 1.19069 0.96382 0.94727 0.90656 1.21298 1.13764 1.25097 0.96180 0.92311 1.25025 0.97427 0.96969 0.95015 1.69970 1.41215 1.40707 1.01575 0.86498 0.82517 0.80209 0.78583 1.19598 1.20944 1.20942 1.23222 1.01577 0.95275 0.96424 0.92428 0.92487 0.92401 0.92360 0.92750 0.92622 0.91146 0.89536 0.88589 0.90113 0.91564 0.75277 0.85571 0.85325 0.91585 0.91570 0.96128 0.96122 0.92960 0.89557 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.78 9.07 37.16 0.34 -0.44 16 2 C -0.09 -0.63 1.39 -153.60 -0.21 -0.84 16 3 C -0.14 -0.89 9.20 37.16 0.34 -0.54 16 4 C -0.12 -0.87 6.79 -25.92 -0.18 -1.04 16 5 C -0.12 -0.88 3.42 -89.81 -0.31 -1.18 16 6 C 0.12 1.13 5.96 -4.04 -0.02 1.11 16 7 N -1.12 -11.83 5.88 -10.61 -0.06 -11.89 16 8 S 2.60 38.04 5.46 -107.50 -0.59 37.45 16 9 O -0.97 -17.04 18.08 -57.54 -1.04 -18.08 16 10 O -0.96 -16.93 17.50 -57.54 -1.01 -17.94 16 11 C -0.61 -9.34 6.07 37.16 0.23 -9.12 16 12 C -0.11 -2.16 5.16 -26.73 -0.14 -2.30 16 13 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 14 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 18 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C -0.13 -1.00 6.76 -25.83 -0.17 -1.17 16 23 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.35 7.34 -51.93 -0.38 -0.04 16 26 H 0.06 0.39 7.96 -51.93 -0.41 -0.02 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 30 H 0.09 0.59 8.06 -51.93 -0.42 0.18 16 31 H 0.10 0.66 7.65 -51.93 -0.40 0.26 16 32 H 0.08 0.80 7.43 -51.93 -0.39 0.42 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.41 3.62 8.61 -34.47 -0.30 3.32 16 35 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 36 H 0.13 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.09 0.74 7.75 -51.93 -0.40 0.34 16 43 H 0.07 0.52 8.10 -51.92 -0.42 0.10 16 LS Contribution 361.05 15.07 5.44 5.44 Total: -1.00 -34.54 361.05 -9.95 -44.48 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -7.73 Total: -1.63 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: -0.68 Total: -28.54 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.67 Total: -37.80 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -2.05 Total: -36.02 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 38.04 SS G_CDS: -0.59 Total: 37.45 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.54 -9.95 -44.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548702358.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.010 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds