Wall clock time and date at job start Tue Mar 31 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 112.85153 * 2 1 4 4 C 1.53789 * 113.61038 * 131.19655 * 2 1 3 5 5 C 1.53780 * 87.07893 * 89.11518 * 4 2 1 6 6 C 1.53006 * 113.61053 * 139.97929 * 5 4 2 7 7 N 1.46500 * 109.46998 * 176.52669 * 6 5 4 8 8 S 1.65598 * 120.00283 * 165.00335 * 7 6 5 9 9 O 1.42094 * 104.27707 * 181.07506 * 8 7 6 10 10 O 1.42105 * 104.27318 * 308.92704 * 8 7 6 11 11 C 1.81396 * 104.44859 * 64.99645 * 8 7 6 12 12 C 1.53000 * 109.46947 * 180.02562 * 11 8 7 13 13 C 1.52997 * 109.47296 * 180.02562 * 12 11 8 14 14 C 1.50703 * 109.47381 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99995 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00115 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99941 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99909 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47417 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47184 * 120.00417 * 18 16 14 21 21 H 1.48503 * 109.47041 * 239.99881 * 18 16 14 22 22 C 1.53777 * 87.17394 * 25.38935 * 5 4 2 23 23 H 1.09007 * 109.47013 * 288.80594 * 1 2 3 24 24 H 1.08998 * 109.47014 * 48.80014 * 1 2 3 25 25 H 1.08998 * 109.47348 * 168.80291 * 1 2 3 26 26 H 1.08999 * 109.46898 * 191.19448 * 3 2 1 27 27 H 1.08997 * 109.47016 * 311.19487 * 3 2 1 28 28 H 1.08996 * 109.46824 * 71.19568 * 3 2 1 29 29 H 1.08992 * 113.61445 * 334.56320 * 4 2 1 30 30 H 1.09001 * 113.61082 * 203.66197 * 4 2 1 31 31 H 1.08998 * 113.61602 * 270.79563 * 5 4 2 32 32 H 1.08993 * 109.46955 * 296.52894 * 6 5 4 33 33 H 1.09000 * 109.47050 * 56.52723 * 6 5 4 34 34 H 0.97004 * 119.99709 * 345.00122 * 7 6 5 35 35 H 1.09001 * 109.47447 * 299.99994 * 11 8 7 36 36 H 1.08995 * 109.47186 * 60.00947 * 11 8 7 37 37 H 1.09003 * 109.47488 * 300.00623 * 12 11 8 38 38 H 1.09006 * 109.46963 * 60.00224 * 12 11 8 39 39 H 1.09001 * 109.47206 * 299.99887 * 13 12 11 40 40 H 1.08997 * 109.46744 * 60.00223 * 13 12 11 41 41 H 0.97002 * 119.99587 * 179.97438 * 17 16 14 42 42 H 1.08999 * 113.61825 * 89.16304 * 22 5 4 43 43 H 1.09009 * 113.61337 * 220.05752 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1460 -0.9281 1.0603 5 6 2.0929 -2.0426 0.0020 6 6 3.3264 -2.9479 0.0029 7 7 3.1450 -4.0213 -0.9774 8 16 4.4436 -4.9262 -1.4642 9 8 3.9026 -5.8315 -2.4166 10 8 5.4198 -3.9643 -1.8400 11 6 4.9646 -5.8112 0.0310 12 6 6.1729 -6.6922 -0.2928 13 6 6.6121 -7.4391 0.9682 14 6 7.8026 -8.3064 0.6494 15 1 8.2060 -8.3229 -0.3523 16 6 8.3775 -9.0781 1.6368 17 7 7.8866 -9.0577 2.8567 18 14 9.8536 -10.1525 1.2418 19 1 10.2098 -9.9969 -0.1915 20 1 11.0049 -9.7415 2.0849 21 1 9.5200 -11.5730 1.5181 22 6 2.1448 -0.9318 -1.0601 23 1 -0.3633 0.3313 0.9729 24 1 -0.3633 0.6769 -0.7732 25 1 -0.3634 -1.0081 -0.1995 26 1 3.1943 1.3532 -0.1995 27 1 1.6416 2.0076 -0.7733 28 1 1.9600 1.8733 0.9728 29 1 1.4945 -1.1068 1.9156 30 1 3.1590 -0.6487 1.3496 31 1 1.1573 -2.6019 0.0035 32 1 4.2073 -2.3618 -0.2587 33 1 3.4590 -3.3802 0.9947 34 1 2.2641 -4.2020 -1.3413 35 1 5.2367 -5.0914 0.8030 36 1 4.1452 -6.4349 0.3882 37 1 5.9013 -7.4119 -1.0650 38 1 6.9923 -6.0682 -0.6498 39 1 6.8836 -6.7197 1.7406 40 1 5.7926 -8.0631 1.3247 41 1 8.2909 -9.6009 3.5513 42 1 3.1575 -0.6534 -1.3517 43 1 1.4923 -1.1135 -1.9143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548702358.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:18 Heat of formation + Delta-G solvation = -110.759271 kcal Electronic energy + Delta-G solvation = -21000.951820 eV Core-core repulsion = 17785.748407 eV Total energy + Delta-G solvation = -3215.203413 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.71904 -38.17774 -37.05216 -36.46635 -36.05441 -34.16506 -31.64411 -29.65405 -28.24779 -26.85068 -26.50144 -25.62175 -22.45862 -21.85906 -20.33570 -19.13781 -18.64178 -18.38318 -17.55313 -17.14363 -16.53716 -16.36219 -16.11164 -15.54596 -15.33455 -14.81386 -14.62925 -14.49298 -14.07236 -13.89691 -13.57746 -13.51312 -13.27391 -13.18003 -13.07500 -12.98084 -12.78123 -12.73739 -12.65067 -12.60466 -12.24117 -12.15584 -11.77787 -11.75305 -11.40641 -11.36459 -11.10425 -10.93934 -10.88150 -10.58493 -10.23074 -8.23414 -6.34238 -0.71591 1.39296 1.40022 1.53320 1.82013 2.39445 2.77249 3.10210 3.24531 3.58263 3.68999 3.74459 3.77029 3.86362 3.95873 4.21598 4.39714 4.44357 4.46624 4.56813 4.66856 4.74898 4.82883 4.84874 4.95457 4.97016 4.97683 5.05375 5.06000 5.07818 5.11830 5.23868 5.32185 5.36079 5.45206 5.59197 5.62688 5.71358 5.79159 6.15603 6.19406 6.81604 7.35168 8.88319 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029490 B = 0.002853 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.251372 B = 9810.303489 C =10274.427498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.090 4.090 3 C -0.137 4.137 4 C -0.123 4.123 5 C -0.111 4.111 6 C 0.112 3.888 7 N -1.107 6.107 8 S 2.631 3.369 9 O -0.995 6.995 10 O -0.992 6.992 11 C -0.609 4.609 12 C -0.107 4.107 13 C 0.031 3.969 14 C -0.552 4.552 15 H 0.059 0.941 16 C 0.002 3.998 17 N -0.930 5.930 18 Si 0.963 3.037 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.135 4.135 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.425 0.575 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.004 0.996 40 H 0.003 0.997 41 H 0.265 0.735 42 H 0.075 0.925 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.301 19.088 -3.590 25.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.090 4.090 3 C -0.194 4.194 4 C -0.161 4.161 5 C -0.131 4.131 6 C -0.014 4.014 7 N -0.869 5.869 8 S 2.726 3.274 9 O -0.985 6.985 10 O -0.982 6.982 11 C -0.740 4.740 12 C -0.147 4.147 13 C -0.008 4.008 14 C -0.590 4.590 15 H 0.078 0.922 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.788 3.212 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.172 4.172 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.262 0.738 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.022 0.978 40 H 0.021 0.979 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.749 19.063 -4.249 25.090 hybrid contribution 0.430 -0.958 0.575 1.197 sum -15.319 18.105 -3.674 24.000 Atomic orbital electron populations 1.21598 0.92529 1.02138 1.02177 1.21837 0.96029 0.94520 0.96656 1.21734 1.00351 0.95366 1.01946 1.23086 1.01851 0.94671 0.96529 1.22719 0.97863 0.94435 0.98095 1.21614 0.99672 0.88280 0.91797 1.55250 1.25561 1.47182 1.58874 1.04140 0.73471 0.73728 0.76044 1.93528 1.78309 1.66950 1.59728 1.93527 1.62507 1.60336 1.81836 1.30500 1.08837 1.13118 1.21566 1.21317 0.94812 0.97898 1.00625 1.18969 0.95100 0.94246 0.92462 1.21772 1.14928 1.25858 0.96399 0.92233 1.25936 1.00457 0.98367 0.94839 1.70076 1.42733 1.41639 1.02538 0.85424 0.78785 0.78323 0.78696 1.18839 1.20177 1.20198 1.23251 1.01108 0.96015 0.96834 0.91876 0.92331 0.92177 0.92901 0.92542 0.92099 0.90299 0.89653 0.87338 0.90908 0.89896 0.73835 0.83673 0.83565 0.91646 0.91560 0.97784 0.97866 0.92619 0.90669 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.07 71.98 0.65 -0.64 16 2 C -0.09 -1.09 1.39 -51.59 -0.07 -1.16 16 3 C -0.14 -1.61 9.20 71.98 0.66 -0.95 16 4 C -0.12 -1.47 6.79 31.12 0.21 -1.25 16 5 C -0.11 -1.46 3.42 -10.27 -0.04 -1.50 16 6 C 0.11 1.86 5.96 86.38 0.51 2.37 16 7 N -1.11 -21.27 5.88 -187.49 -1.10 -22.37 16 8 S 2.63 74.10 5.46 -56.49 -0.31 73.79 16 9 O -0.99 -34.24 18.08 -127.65 -2.31 -36.55 16 10 O -0.99 -34.21 17.50 -127.65 -2.23 -36.45 16 11 C -0.61 -18.00 6.07 71.98 0.44 -17.56 16 12 C -0.11 -4.37 5.16 30.59 0.16 -4.21 16 13 C 0.03 1.57 4.97 29.85 0.15 1.72 16 14 C -0.55 -31.50 9.11 25.60 0.23 -31.26 16 15 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 16 C 0.00 0.12 5.46 84.65 0.46 0.59 16 17 N -0.93 -55.76 13.29 21.45 0.28 -55.47 16 18 Si 0.96 44.31 29.54 68.60 2.03 46.33 16 19 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 C -0.13 -1.94 6.76 31.18 0.21 -1.73 16 23 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 24 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.58 7.34 -2.39 -0.02 0.57 16 26 H 0.05 0.67 7.96 -2.39 -0.02 0.65 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.82 8.10 -2.39 -0.02 0.80 16 30 H 0.08 1.04 8.06 -2.39 -0.02 1.02 16 31 H 0.11 1.18 7.65 -2.39 -0.02 1.16 16 32 H 0.07 1.36 7.43 -2.39 -0.02 1.34 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.43 6.51 8.61 -96.74 -0.83 5.67 16 35 H 0.15 3.71 8.14 -2.39 -0.02 3.69 16 36 H 0.15 3.80 8.14 -2.39 -0.02 3.78 16 37 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 39 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 42 H 0.07 1.25 7.75 -2.39 -0.02 1.23 16 43 H 0.07 0.96 8.10 -2.38 -0.02 0.94 16 Total: -1.00 -73.43 361.05 0.07 -73.36 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.13 Total: 12.96 kcal Atomic # 6 Polarization: -59.17 SS G_CDS: 3.58 Total: -55.59 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -0.82 Total: -77.85 kcal Atomic # 8 Polarization: -68.46 SS G_CDS: -4.54 Total: -73.00 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 74.10 SS G_CDS: -0.31 Total: 73.79 kcal Total: -73.43 0.07 -73.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548702358.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.401 kcal (2) G-P(sol) polarization free energy of solvation -73.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds