Wall clock time and date at job start Tue Mar 31 2020 06:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00735 * 2 1 4 4 N 1.46492 * 109.47368 * 124.99134 * 3 2 1 5 5 C 1.46496 * 120.00321 * 283.84262 * 4 3 2 6 6 C 1.50700 * 109.47345 * 269.99929 * 5 4 3 7 7 H 1.08002 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00534 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99604 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00431 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46940 * 60.00435 * 10 8 6 12 12 H 1.48499 * 109.47130 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47131 * 300.00267 * 10 8 6 14 14 C 1.34784 * 119.99907 * 103.84414 * 4 3 2 15 15 O 1.21587 * 119.99897 * 186.68850 * 14 4 3 16 16 C 1.47534 * 119.99554 * 6.69160 * 14 4 3 17 17 C 1.39710 * 120.19647 * 326.11605 * 16 14 4 18 18 C 1.37781 * 119.91141 * 179.97438 * 17 16 14 19 19 C 1.38550 * 120.29983 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.80273 * 180.02562 * 19 18 17 21 21 C 1.38062 * 120.38962 * 359.74110 * 19 18 17 22 22 C 1.38712 * 120.08197 * 0.51546 * 21 19 18 23 23 O 1.35653 * 120.14859 * 179.76877 * 22 21 19 24 24 C 1.42901 * 116.99723 * 359.71543 * 23 22 21 25 25 H 1.07992 * 120.00294 * 179.97438 * 1 2 3 26 26 H 1.07995 * 119.99623 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.99733 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46574 * 4.99244 * 3 2 1 29 29 H 1.09000 * 109.47073 * 245.00202 * 3 2 1 30 30 H 1.09002 * 109.47424 * 30.00201 * 5 4 3 31 31 H 1.09002 * 109.47589 * 150.00076 * 5 4 3 32 32 H 0.97002 * 120.00378 * 179.97438 * 9 8 6 33 33 H 1.08006 * 120.04145 * 0.02562 * 17 16 14 34 34 H 1.07995 * 119.84820 * 180.02562 * 18 17 16 35 35 H 1.09004 * 109.46742 * 90.00420 * 20 19 18 36 36 H 1.09003 * 109.47334 * 209.99633 * 20 19 18 37 37 H 1.08993 * 109.47495 * 330.00544 * 20 19 18 38 38 H 1.08000 * 119.95851 * 180.25395 * 21 19 18 39 39 H 1.08997 * 109.46992 * 180.02562 * 24 23 22 40 40 H 1.09004 * 109.46808 * 60.00416 * 24 23 22 41 41 H 1.08994 * 109.47901 * 300.00203 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.4921 1.5731 2.4866 6 6 2.5010 3.0532 2.7694 7 1 2.8455 3.7451 2.0151 8 6 2.0684 3.5244 3.9908 9 7 1.6485 2.6819 4.9093 10 14 2.0788 5.3592 4.3412 11 1 1.2087 6.0555 3.3596 12 1 1.5704 5.6037 5.7148 13 1 3.4660 5.8770 4.2278 14 6 4.3111 1.1345 0.9258 15 8 5.0662 1.0354 1.8735 16 6 4.8367 1.0390 -0.4495 17 6 4.0635 0.4594 -1.4585 18 6 4.5599 0.3737 -2.7410 19 6 5.8237 0.8593 -3.0352 20 6 6.3554 0.7603 -4.4418 21 6 6.5965 1.4387 -2.0487 22 6 6.1147 1.5285 -0.7510 23 8 6.8747 2.0933 0.2203 24 6 8.1664 2.5703 -0.1618 25 1 -0.5400 -0.9352 -0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3587 2.1316 0.0894 29 1 2.6214 1.4024 -0.9314 30 1 1.4738 1.1933 2.5700 31 1 3.1307 1.0617 3.2069 32 1 1.3445 3.0132 5.7688 33 1 3.0776 0.0799 -1.2338 34 1 3.9612 -0.0741 -3.5203 35 1 6.0796 1.6561 -4.9984 36 1 7.4413 0.6697 -4.4143 37 1 5.9298 -0.1162 -4.9303 38 1 7.5790 1.8187 -2.2867 39 1 8.6679 2.9966 0.7070 40 1 8.0584 3.3351 -0.9309 41 1 8.7584 1.7429 -0.5528 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000561015845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:48 Heat of formation + Delta-G solvation = -1.323607 kcal Electronic energy + Delta-G solvation = -23248.675142 eV Core-core repulsion = 19902.773264 eV Total energy + Delta-G solvation = -3345.901878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.48754 -38.60306 -37.41484 -35.66026 -33.27825 -32.66855 -31.89302 -30.15740 -28.23091 -27.64899 -26.47706 -25.49678 -23.08920 -22.19595 -21.47605 -20.01673 -18.96723 -17.34696 -16.68187 -16.38574 -16.32444 -15.65919 -15.35290 -14.76907 -14.66652 -14.26621 -14.03327 -13.77585 -13.67039 -13.48754 -12.91137 -12.67063 -12.34079 -12.27777 -12.02423 -11.83874 -11.70350 -11.25046 -11.16472 -11.03153 -10.94942 -10.84716 -10.60790 -10.48686 -10.11904 -9.61147 -9.18749 -8.88560 -8.56888 -8.36101 -8.07236 -7.55605 -5.97269 -4.01572 1.09917 1.47366 2.48698 3.35797 3.37218 3.40037 3.42195 3.44655 3.91173 4.23896 4.50150 4.65473 4.80652 4.99607 5.09185 5.15362 5.19623 5.28096 5.31277 5.36933 5.41150 5.45975 5.50494 5.54849 5.62085 5.64542 5.73290 5.98585 6.08267 6.23380 6.30024 6.34149 6.52285 6.78567 6.84279 6.97759 7.18659 7.51565 7.56714 7.65104 8.00082 8.31848 8.50637 8.97954 9.20221 9.62962 11.10778 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.005453 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.580208 B = 5133.772387 C = 6365.900175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.173 4.173 3 C 0.106 3.894 4 N -0.588 5.588 5 C 0.248 3.752 6 C -0.525 4.525 7 H 0.056 0.944 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.553 3.447 15 O -0.523 6.523 16 C -0.160 4.160 17 C -0.070 4.070 18 C -0.171 4.171 19 C -0.035 4.035 20 C -0.115 4.115 21 C -0.223 4.223 22 C 0.181 3.819 23 O -0.284 6.284 24 C 0.025 3.975 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.157 0.843 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.130 0.870 39 H 0.101 0.899 40 H 0.053 0.947 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.189 -4.308 -19.045 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.192 4.192 3 C -0.017 4.017 4 N -0.319 5.319 5 C 0.130 3.870 6 C -0.564 4.564 7 H 0.074 0.926 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.340 3.660 15 O -0.400 6.400 16 C -0.164 4.164 17 C -0.088 4.088 18 C -0.189 4.189 19 C -0.036 4.036 20 C -0.172 4.172 21 C -0.241 4.241 22 C 0.133 3.867 23 O -0.195 6.195 24 C -0.071 4.071 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.125 0.875 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.174 0.826 34 H 0.144 0.856 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.148 0.852 39 H 0.119 0.881 40 H 0.071 0.929 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.484 -4.313 -18.078 19.684 hybrid contribution 0.083 1.099 0.109 1.108 sum 6.567 -3.214 -17.968 19.399 Atomic orbital electron populations 1.23823 0.95759 1.01816 0.99789 1.23337 0.96416 0.98930 1.00557 1.21329 0.93611 0.95267 0.91482 1.48056 1.05036 1.69001 1.09829 1.19254 0.94858 0.96483 0.76443 1.21416 1.42978 0.92197 0.99812 0.92564 1.24914 0.95247 0.97995 0.95852 1.69931 1.43470 1.34198 1.05809 0.86580 0.78432 0.85322 0.77213 1.20290 1.21193 1.20213 1.17880 0.82668 0.78007 0.87452 1.90761 1.56685 1.49583 1.42984 1.19639 0.93670 1.07092 0.96041 1.21912 0.99298 0.95612 0.91932 1.20845 0.96088 1.05129 0.96859 1.19785 0.93753 0.94789 0.95259 1.20832 1.01160 1.02547 0.92656 1.21014 1.02125 1.08885 0.92123 1.18999 0.89759 0.90688 0.87237 1.86364 1.27596 1.71845 1.33690 1.23102 0.82991 0.98544 1.02420 0.88663 0.88225 0.87495 0.90208 0.88105 0.94845 0.93719 0.92742 0.82634 0.85597 0.90882 0.91593 0.91243 0.85243 0.88101 0.92877 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 14.32 29.01 0.42 -1.95 16 2 C -0.17 -2.61 8.23 -36.03 -0.30 -2.90 16 3 C 0.11 1.86 5.37 -5.20 -0.03 1.84 16 4 N -0.59 -13.41 2.48 -177.67 -0.44 -13.85 16 5 C 0.25 6.81 5.16 -5.20 -0.03 6.78 16 6 C -0.53 -15.44 9.39 -34.44 -0.32 -15.76 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 9 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 10 Si 0.90 22.42 29.54 -169.99 -5.02 17.40 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.55 12.94 7.28 -12.47 -0.09 12.85 16 15 O -0.52 -14.48 15.44 -12.87 -0.20 -14.68 16 16 C -0.16 -2.99 5.53 -104.84 -0.58 -3.57 16 17 C -0.07 -1.01 7.42 -39.20 -0.29 -1.30 16 18 C -0.17 -2.03 9.67 -39.63 -0.38 -2.42 16 19 C -0.04 -0.41 5.88 -104.57 -0.62 -1.02 16 20 C -0.12 -0.90 10.00 36.01 0.36 -0.54 16 21 C -0.22 -2.93 8.67 -39.47 -0.34 -3.27 16 22 C 0.18 3.13 6.67 -38.69 -0.26 2.88 16 23 O -0.28 -5.27 9.10 -36.82 -0.33 -5.60 16 24 C 0.02 0.30 9.81 101.05 0.99 1.29 16 25 H 0.10 1.10 8.06 -52.49 -0.42 0.68 16 26 H 0.10 1.34 7.84 -52.49 -0.41 0.93 16 27 H 0.11 1.52 7.71 -52.48 -0.40 1.12 16 28 H 0.08 1.44 7.79 -51.93 -0.40 1.04 16 29 H 0.10 1.54 3.80 -52.25 -0.20 1.34 16 30 H 0.03 0.92 7.93 -51.93 -0.41 0.51 16 31 H 0.04 1.38 7.34 -51.93 -0.38 1.00 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.16 2.08 3.65 -52.48 -0.19 1.89 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 37 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 38 H 0.13 1.36 6.30 -52.49 -0.33 1.02 16 39 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 41 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -35.85 342.39 -7.27 -43.12 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.61 Total: 0.35 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -1.56 Total: -5.39 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.30 Total: -40.36 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.53 Total: -20.28 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.85 -7.27 -43.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561015845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.800 kcal (2) G-P(sol) polarization free energy of solvation -35.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds