Wall clock time and date at job start Tue Mar 31 2020 06:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00735 * 2 1 4 4 N 1.46492 * 109.47368 * 124.99134 * 3 2 1 5 5 C 1.46496 * 120.00321 * 283.84262 * 4 3 2 6 6 C 1.50700 * 109.47345 * 269.99929 * 5 4 3 7 7 H 1.08002 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00534 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99604 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00431 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46940 * 60.00435 * 10 8 6 12 12 H 1.48499 * 109.47130 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47131 * 300.00267 * 10 8 6 14 14 C 1.34784 * 119.99907 * 103.84414 * 4 3 2 15 15 O 1.21587 * 119.99897 * 186.68850 * 14 4 3 16 16 C 1.47534 * 119.99554 * 6.69160 * 14 4 3 17 17 C 1.39710 * 120.19647 * 326.11605 * 16 14 4 18 18 C 1.37781 * 119.91141 * 179.97438 * 17 16 14 19 19 C 1.38550 * 120.29983 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.80273 * 180.02562 * 19 18 17 21 21 C 1.38062 * 120.38962 * 359.74110 * 19 18 17 22 22 C 1.38712 * 120.08197 * 0.51546 * 21 19 18 23 23 O 1.35653 * 120.14859 * 179.76877 * 22 21 19 24 24 C 1.42901 * 116.99723 * 359.71543 * 23 22 21 25 25 H 1.07992 * 120.00294 * 179.97438 * 1 2 3 26 26 H 1.07995 * 119.99623 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.99733 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46574 * 4.99244 * 3 2 1 29 29 H 1.09000 * 109.47073 * 245.00202 * 3 2 1 30 30 H 1.09002 * 109.47424 * 30.00201 * 5 4 3 31 31 H 1.09002 * 109.47589 * 150.00076 * 5 4 3 32 32 H 0.97002 * 120.00378 * 179.97438 * 9 8 6 33 33 H 1.08006 * 120.04145 * 0.02562 * 17 16 14 34 34 H 1.07995 * 119.84820 * 180.02562 * 18 17 16 35 35 H 1.09004 * 109.46742 * 90.00420 * 20 19 18 36 36 H 1.09003 * 109.47334 * 209.99633 * 20 19 18 37 37 H 1.08993 * 109.47495 * 330.00544 * 20 19 18 38 38 H 1.08000 * 119.95851 * 180.25395 * 21 19 18 39 39 H 1.08997 * 109.46992 * 180.02562 * 24 23 22 40 40 H 1.09004 * 109.46808 * 60.00416 * 24 23 22 41 41 H 1.08994 * 109.47901 * 300.00203 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.4921 1.5731 2.4866 6 6 2.5010 3.0532 2.7694 7 1 2.8455 3.7451 2.0151 8 6 2.0684 3.5244 3.9908 9 7 1.6485 2.6819 4.9093 10 14 2.0788 5.3592 4.3412 11 1 1.2087 6.0555 3.3596 12 1 1.5704 5.6037 5.7148 13 1 3.4660 5.8770 4.2278 14 6 4.3111 1.1345 0.9258 15 8 5.0662 1.0354 1.8735 16 6 4.8367 1.0390 -0.4495 17 6 4.0635 0.4594 -1.4585 18 6 4.5599 0.3737 -2.7410 19 6 5.8237 0.8593 -3.0352 20 6 6.3554 0.7603 -4.4418 21 6 6.5965 1.4387 -2.0487 22 6 6.1147 1.5285 -0.7510 23 8 6.8747 2.0933 0.2203 24 6 8.1664 2.5703 -0.1618 25 1 -0.5400 -0.9352 -0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3587 2.1316 0.0894 29 1 2.6214 1.4024 -0.9314 30 1 1.4738 1.1933 2.5700 31 1 3.1307 1.0617 3.2069 32 1 1.3445 3.0132 5.7688 33 1 3.0776 0.0799 -1.2338 34 1 3.9612 -0.0741 -3.5203 35 1 6.0796 1.6561 -4.9984 36 1 7.4413 0.6697 -4.4143 37 1 5.9298 -0.1162 -4.9303 38 1 7.5790 1.8187 -2.2867 39 1 8.6679 2.9966 0.7070 40 1 8.0584 3.3351 -0.9309 41 1 8.7584 1.7429 -0.5528 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000561015845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:48 Heat of formation + Delta-G solvation = -23.953547 kcal Electronic energy + Delta-G solvation = -23249.656450 eV Core-core repulsion = 19902.773264 eV Total energy + Delta-G solvation = -3346.883186 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.77776 -40.12319 -38.59689 -37.29203 -35.23505 -33.82337 -33.61099 -31.24305 -29.86093 -28.78240 -27.71798 -27.04376 -24.98581 -23.28244 -22.74064 -21.37453 -20.41528 -18.68045 -18.55227 -18.05846 -17.68480 -16.93646 -16.70933 -16.37480 -16.09664 -15.89673 -15.47258 -14.86989 -14.64511 -14.50383 -14.33903 -14.21479 -14.07105 -13.35159 -13.19395 -13.08006 -12.95911 -12.93297 -12.75235 -12.58416 -12.31567 -12.22974 -12.22032 -11.95453 -11.80634 -11.62659 -10.66009 -10.62217 -10.39495 -9.72914 -9.51159 -9.15014 -8.23657 -6.39146 -0.05024 0.40115 1.29092 1.33418 1.38558 1.46058 1.91095 2.30913 2.36591 2.46607 2.81345 3.05019 3.60988 3.81291 3.90186 4.04797 4.14342 4.20615 4.29526 4.33777 4.34099 4.35757 4.54283 4.64611 4.70585 4.83221 4.84925 4.91887 4.97755 5.04475 5.17156 5.24315 5.28124 5.31927 5.49698 5.56407 5.68200 5.74160 5.83034 5.94418 6.05324 6.43656 6.67454 6.74972 7.25433 7.45510 8.83501 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.005453 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.580208 B = 5133.772387 C = 6365.900175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.193 4.193 3 C 0.105 3.895 4 N -0.594 5.594 5 C 0.267 3.733 6 C -0.546 4.546 7 H 0.048 0.952 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.968 3.032 11 H -0.259 1.259 12 H -0.274 1.274 13 H -0.279 1.279 14 C 0.544 3.456 15 O -0.587 6.587 16 C -0.203 4.203 17 C -0.069 4.069 18 C -0.161 4.161 19 C -0.022 4.022 20 C -0.114 4.114 21 C -0.219 4.219 22 C 0.159 3.841 23 O -0.334 6.334 24 C 0.016 3.984 25 H 0.122 0.878 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.069 0.931 29 H 0.127 0.873 30 H 0.025 0.975 31 H -0.006 1.006 32 H 0.268 0.732 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.158 0.842 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.094 -3.905 -22.934 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.212 4.212 3 C -0.017 4.017 4 N -0.323 5.323 5 C 0.146 3.854 6 C -0.585 4.585 7 H 0.066 0.934 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.792 3.208 11 H -0.183 1.183 12 H -0.198 1.198 13 H -0.205 1.205 14 C 0.334 3.666 15 O -0.469 6.469 16 C -0.206 4.206 17 C -0.087 4.087 18 C -0.179 4.179 19 C -0.022 4.022 20 C -0.170 4.170 21 C -0.238 4.238 22 C 0.111 3.889 23 O -0.247 6.247 24 C -0.078 4.078 25 H 0.140 0.860 26 H 0.118 0.882 27 H 0.133 0.867 28 H 0.088 0.912 29 H 0.144 0.856 30 H 0.043 0.957 31 H 0.013 0.987 32 H 0.077 0.923 33 H 0.181 0.819 34 H 0.184 0.816 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.176 0.824 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.361 -3.918 -22.028 23.260 hybrid contribution 0.141 0.916 1.220 1.533 sum 6.502 -3.002 -20.807 22.005 Atomic orbital electron populations 1.24079 0.95208 1.03141 0.96834 1.23197 0.96930 0.97863 1.03167 1.21604 0.92948 0.96535 0.90565 1.48043 1.06149 1.68708 1.09442 1.18670 0.93118 0.95163 0.78457 1.21639 1.43580 0.92934 1.00314 0.93373 1.25860 0.94381 1.03327 0.95351 1.70054 1.43745 1.36552 1.06263 0.85464 0.78455 0.78936 0.77929 1.18310 1.19843 1.20508 1.18745 0.82141 0.76412 0.89269 1.90691 1.58101 1.52580 1.45518 1.19443 0.95660 1.11571 0.93973 1.21994 0.99312 0.95112 0.92285 1.21298 0.96561 1.03829 0.96218 1.20363 0.93089 0.91898 0.96855 1.20951 1.02069 1.04191 0.89818 1.21335 1.03466 1.08492 0.90474 1.19331 0.89436 0.91409 0.88697 1.86292 1.29961 1.72532 1.35887 1.23394 0.81069 0.99896 1.03438 0.85985 0.88176 0.86682 0.91221 0.85609 0.95676 0.98744 0.92290 0.81908 0.81606 0.89221 0.90261 0.89303 0.82436 0.87810 0.90721 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 14.32 67.78 0.97 -3.01 16 2 C -0.19 -5.74 8.23 25.65 0.21 -5.53 16 3 C 0.10 3.76 5.37 85.63 0.46 4.22 16 4 N -0.59 -28.85 2.48 -834.29 -2.06 -30.92 16 5 C 0.27 15.72 5.16 85.63 0.44 16.16 16 6 C -0.55 -33.75 9.39 25.60 0.24 -33.51 16 7 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 8 C 0.01 0.60 5.46 84.65 0.46 1.06 16 9 N -0.93 -58.35 13.29 21.45 0.28 -58.06 16 10 Si 0.97 46.86 29.54 68.60 2.03 48.89 16 11 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 14 C 0.54 27.38 7.28 86.69 0.63 28.01 16 15 O -0.59 -35.58 15.44 13.38 0.21 -35.38 16 16 C -0.20 -7.81 5.53 -20.01 -0.11 -7.92 16 17 C -0.07 -1.94 7.42 22.52 0.17 -1.77 16 18 C -0.16 -3.23 9.67 22.24 0.22 -3.02 16 19 C -0.02 -0.41 5.88 -19.83 -0.12 -0.53 16 20 C -0.11 -1.13 10.00 71.24 0.71 -0.42 16 21 C -0.22 -5.25 8.67 22.34 0.19 -5.06 16 22 C 0.16 5.57 6.67 22.84 0.15 5.72 16 23 O -0.33 -13.01 9.10 -72.32 -0.66 -13.67 16 24 C 0.02 0.39 9.81 113.37 1.11 1.50 16 25 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 26 H 0.10 2.57 7.84 -2.91 -0.02 2.54 16 27 H 0.12 3.24 7.71 -2.91 -0.02 3.22 16 28 H 0.07 2.59 7.79 -2.39 -0.02 2.57 16 29 H 0.13 3.84 3.80 -2.68 -0.01 3.83 16 30 H 0.03 1.49 7.93 -2.39 -0.02 1.47 16 31 H -0.01 -0.38 7.34 -2.39 -0.02 -0.40 16 32 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 33 H 0.16 4.20 3.65 -2.91 -0.01 4.19 16 34 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 35 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.08 0.64 8.08 -2.39 -0.02 0.63 16 37 H 0.09 0.62 8.08 -2.39 -0.02 0.60 16 38 H 0.16 2.76 6.30 -2.91 -0.02 2.74 16 39 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.07 1.42 7.65 -2.38 -0.02 1.40 16 41 H 0.07 1.42 7.67 -2.39 -0.02 1.41 16 Total: -1.00 -85.96 342.39 6.56 -79.40 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 1.03 Total: 13.84 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 5.74 Total: -4.10 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -1.78 Total: -88.98 kcal Atomic # 8 Polarization: -48.60 SS G_CDS: -0.45 Total: -49.05 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -85.96 6.56 -79.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561015845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.447 kcal (2) G-P(sol) polarization free energy of solvation -85.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds