Wall clock time and date at job start Tue Mar 31 2020 05:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 110.67104 * 2 1 4 4 C 1.54702 * 110.75837 * 123.23721 * 2 1 3 5 5 C 1.51652 * 101.95026 * 93.10401 * 4 2 1 6 6 C 1.37891 * 132.10790 * 195.60609 * 5 4 2 7 7 C 1.38333 * 120.10864 * 178.85600 * 6 5 4 8 8 C 1.38232 * 119.83115 * 0.51116 * 7 6 5 9 9 C 1.38494 * 120.26573 * 359.67706 * 8 7 6 10 10 N 1.40125 * 119.93907 * 180.27227 * 9 8 7 11 11 C 1.34779 * 120.00239 * 24.85753 * 10 9 8 12 12 O 1.21288 * 119.99563 * 5.52492 * 11 10 9 13 13 C 1.50700 * 120.00045 * 185.52329 * 11 10 9 14 14 C 1.52995 * 109.46759 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.46877 * 180.02562 * 14 13 11 16 16 H 1.08009 * 119.99790 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99990 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00091 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99839 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46820 * 60.00275 * 19 17 15 21 21 H 1.48500 * 109.47167 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47534 * 300.00030 * 19 17 15 23 23 C 1.38681 * 107.06760 * 15.14682 * 5 4 2 24 24 O 1.36215 * 111.25601 * 1.41705 * 23 5 4 25 25 H 1.08998 * 109.47422 * 296.76497 * 1 2 3 26 26 H 1.08998 * 109.47148 * 56.76677 * 1 2 3 27 27 H 1.09000 * 109.46967 * 176.76023 * 1 2 3 28 28 H 1.09001 * 109.46837 * 183.23448 * 3 2 1 29 29 H 1.09002 * 109.46779 * 303.23764 * 3 2 1 30 30 H 1.09000 * 109.47031 * 63.23266 * 3 2 1 31 31 H 1.08998 * 110.93131 * 334.94067 * 4 2 1 32 32 H 1.09002 * 110.93126 * 211.27002 * 4 2 1 33 33 H 1.07996 * 119.94319 * 359.13810 * 6 5 4 34 34 H 1.08003 * 120.08303 * 180.25960 * 7 6 5 35 35 H 1.07998 * 119.86956 * 179.97438 * 8 7 6 36 36 H 0.97002 * 120.00226 * 204.84989 * 10 9 8 37 37 H 1.08997 * 109.47308 * 300.00328 * 13 11 10 38 38 H 1.08998 * 109.46766 * 59.99810 * 13 11 10 39 39 H 1.09002 * 109.47158 * 299.99878 * 14 13 11 40 40 H 1.08998 * 109.47634 * 60.00344 * 14 13 11 41 41 H 0.97003 * 119.99925 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0701 1.4315 0.0000 4 6 2.0783 -0.7929 1.2099 5 6 2.2647 -2.1773 0.6197 6 6 2.4527 -3.4131 1.2020 7 6 2.5745 -4.5415 0.4112 8 6 2.5179 -4.4260 -0.9651 9 6 2.3331 -3.1865 -1.5546 10 7 2.2710 -3.0781 -2.9503 11 6 1.8910 -4.1372 -3.6923 12 8 1.5071 -5.1515 -3.1493 13 6 1.9433 -4.0611 -5.1964 14 6 1.4632 -5.3865 -5.7911 15 6 1.5160 -5.3106 -7.2953 16 1 1.8575 -4.4071 -7.7787 17 6 1.1274 -6.3940 -8.0543 18 7 0.7112 -7.4939 -7.4656 19 14 1.1923 -6.2997 -9.9188 20 1 2.5884 -6.0397 -10.3529 21 1 0.7264 -7.5861 -10.4960 22 1 0.3143 -5.1985 -10.3896 23 6 2.2079 -2.0429 -0.7594 24 8 2.0396 -0.7408 -1.1221 25 1 -0.3634 0.4628 0.9175 26 1 -0.3633 0.5632 -0.8596 27 1 -0.3633 -1.0260 -0.0581 28 1 3.1584 1.4092 -0.0580 29 1 1.6713 1.9703 -0.8596 30 1 1.7653 1.9348 0.9175 31 1 1.3540 -0.8110 2.0242 32 1 3.0300 -0.3814 1.5462 33 1 2.5004 -3.5006 2.2773 34 1 2.7176 -5.5097 0.8678 35 1 2.6133 -5.3066 -1.5831 36 1 2.5013 -2.2408 -3.3825 37 1 1.2989 -3.2527 -5.5420 38 1 2.9680 -3.8702 -5.5151 39 1 2.1080 -6.1945 -5.4455 40 1 0.4385 -5.5778 -5.4724 41 1 0.4374 -8.2561 -7.9996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573859218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:03 Heat of formation + Delta-G solvation = -54.048604 kcal Electronic energy + Delta-G solvation = -22491.489847 eV Core-core repulsion = 19143.301641 eV Total energy + Delta-G solvation = -3348.188205 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.50752 -39.67869 -37.39480 -34.76190 -33.61420 -33.50118 -31.45613 -30.92142 -29.02387 -27.77200 -26.70527 -25.72532 -22.72687 -22.42741 -20.95513 -20.81459 -19.56160 -17.72583 -17.06854 -16.68358 -16.08601 -15.69715 -15.42544 -15.10103 -14.92553 -14.43756 -14.13051 -13.94276 -13.38233 -13.17578 -13.00944 -12.96701 -12.53024 -12.33583 -12.29906 -12.17452 -12.00812 -11.72103 -11.55549 -11.18934 -11.07098 -10.93750 -10.89715 -10.63094 -10.25072 -9.98333 -9.67426 -9.19246 -9.04459 -8.36343 -8.32765 -7.68721 -5.96998 -4.01614 1.32195 1.34187 3.01751 3.08307 3.34570 3.35993 3.39573 3.42516 3.82360 4.19541 4.27946 4.46973 4.52280 4.73972 4.89575 5.06885 5.17400 5.20115 5.27058 5.31229 5.38020 5.40042 5.46319 5.55728 5.58821 5.69948 5.76978 5.90524 5.93052 6.13521 6.16652 6.25442 6.28066 6.54515 6.63897 6.76443 6.84522 7.25948 7.71498 7.73680 7.82842 8.04747 8.35752 8.60421 9.06047 9.62024 11.13896 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026104 B = 0.003203 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.393262 B = 8740.181766 C = 9498.503616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.102 3.898 3 C -0.140 4.140 4 C -0.097 4.097 5 C -0.156 4.156 6 C -0.100 4.100 7 C -0.123 4.123 8 C -0.105 4.105 9 C 0.151 3.849 10 N -0.680 5.680 11 C 0.510 3.490 12 O -0.514 6.514 13 C -0.129 4.129 14 C 0.037 3.963 15 C -0.529 4.529 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.066 3.934 24 O -0.298 6.298 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.130 0.870 35 H 0.157 0.843 36 H 0.411 0.589 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.592 16.730 19.511 25.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.065 3.935 3 C -0.197 4.197 4 C -0.134 4.134 5 C -0.158 4.158 6 C -0.119 4.119 7 C -0.142 4.142 8 C -0.125 4.125 9 C 0.055 3.945 10 N -0.325 5.325 11 C 0.300 3.700 12 O -0.388 6.388 13 C -0.169 4.169 14 C 0.000 4.000 15 C -0.567 4.567 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C 0.019 3.981 24 O -0.213 6.213 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.139 0.861 34 H 0.148 0.852 35 H 0.175 0.825 36 H 0.247 0.753 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.275 15.902 19.550 25.413 hybrid contribution 0.058 0.434 -1.086 1.171 sum 3.333 16.336 18.465 24.878 Atomic orbital electron populations 1.22199 0.93510 1.03405 1.02926 1.22688 0.94301 0.92699 0.83834 1.21830 1.02010 0.92795 1.03107 1.21844 1.02314 0.91280 0.98006 1.20494 1.06971 0.95319 0.93005 1.20227 1.01474 0.90569 0.99644 1.20966 1.01838 0.98368 0.93026 1.21349 0.99010 0.96765 0.95422 1.17233 1.03246 0.90988 0.83052 1.43904 1.67910 1.16620 1.04026 1.21823 0.74898 0.81960 0.91332 1.90623 1.43891 1.30618 1.73717 1.21916 1.03155 1.04756 0.87065 1.18912 0.97493 0.89151 0.94469 1.21171 1.44551 0.99606 0.91386 0.92595 1.25018 0.95243 0.95424 0.98641 1.69984 1.43674 1.03662 1.35484 0.86640 0.78401 0.77238 0.85580 1.20225 1.21273 1.20231 1.19125 1.02008 0.84495 0.92519 1.86849 1.80579 1.16036 1.37848 0.90865 0.91320 0.91678 0.91403 0.91263 0.90438 0.89246 0.89268 0.86094 0.85233 0.82535 0.75349 0.89887 0.89734 0.95687 0.95703 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 8.86 37.16 0.33 -1.11 16 2 C 0.10 0.97 1.26 -89.72 -0.11 0.86 16 3 C -0.14 -0.96 8.95 37.16 0.33 -0.63 16 4 C -0.10 -0.86 6.18 -26.52 -0.16 -1.03 16 5 C -0.16 -1.90 6.26 -104.12 -0.65 -2.55 16 6 C -0.10 -1.16 10.03 -39.67 -0.40 -1.56 16 7 C -0.12 -1.60 10.06 -39.55 -0.40 -2.00 16 8 C -0.11 -1.69 8.70 -39.49 -0.34 -2.03 16 9 C 0.15 2.41 6.45 -83.37 -0.54 1.87 16 10 N -0.68 -10.95 5.37 -9.67 -0.05 -11.00 16 11 C 0.51 10.00 7.63 -10.98 -0.08 9.91 16 12 O -0.51 -11.84 13.14 5.55 0.07 -11.76 16 13 C -0.13 -2.62 5.64 -27.89 -0.16 -2.78 16 14 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 15 C -0.53 -14.98 9.11 -34.44 -0.31 -15.30 16 16 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 19 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.07 0.93 6.79 -38.81 -0.26 0.67 16 24 O -0.30 -3.88 10.54 -20.43 -0.22 -4.09 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.70 8.07 -51.93 -0.42 0.28 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.64 7.92 -51.93 -0.41 0.23 16 32 H 0.09 0.68 7.92 -51.93 -0.41 0.27 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.16 2.83 5.76 -52.49 -0.30 2.53 16 36 H 0.41 5.55 8.79 -40.82 -0.36 5.19 16 37 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -33.75 342.67 -8.38 -42.13 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.09 Total: 2.71 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -2.98 Total: -13.19 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.68 Total: -37.63 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.14 Total: -15.86 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.75 -8.38 -42.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573859218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.916 kcal (2) G-P(sol) polarization free energy of solvation -33.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds