Wall clock time and date at job start Tue Mar 31 2020 05:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 110.67104 * 2 1 4 4 C 1.54702 * 110.75837 * 123.23721 * 2 1 3 5 5 C 1.51652 * 101.95026 * 93.10401 * 4 2 1 6 6 C 1.37891 * 132.10790 * 195.60609 * 5 4 2 7 7 C 1.38333 * 120.10864 * 178.85600 * 6 5 4 8 8 C 1.38232 * 119.83115 * 0.51116 * 7 6 5 9 9 C 1.38494 * 120.26573 * 359.67706 * 8 7 6 10 10 N 1.40125 * 119.93907 * 180.27227 * 9 8 7 11 11 C 1.34779 * 120.00239 * 24.85753 * 10 9 8 12 12 O 1.21288 * 119.99563 * 5.52492 * 11 10 9 13 13 C 1.50700 * 120.00045 * 185.52329 * 11 10 9 14 14 C 1.52995 * 109.46759 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.46877 * 180.02562 * 14 13 11 16 16 H 1.08009 * 119.99790 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99990 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00091 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99839 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46820 * 60.00275 * 19 17 15 21 21 H 1.48500 * 109.47167 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47534 * 300.00030 * 19 17 15 23 23 C 1.38681 * 107.06760 * 15.14682 * 5 4 2 24 24 O 1.36215 * 111.25601 * 1.41705 * 23 5 4 25 25 H 1.08998 * 109.47422 * 296.76497 * 1 2 3 26 26 H 1.08998 * 109.47148 * 56.76677 * 1 2 3 27 27 H 1.09000 * 109.46967 * 176.76023 * 1 2 3 28 28 H 1.09001 * 109.46837 * 183.23448 * 3 2 1 29 29 H 1.09002 * 109.46779 * 303.23764 * 3 2 1 30 30 H 1.09000 * 109.47031 * 63.23266 * 3 2 1 31 31 H 1.08998 * 110.93131 * 334.94067 * 4 2 1 32 32 H 1.09002 * 110.93126 * 211.27002 * 4 2 1 33 33 H 1.07996 * 119.94319 * 359.13810 * 6 5 4 34 34 H 1.08003 * 120.08303 * 180.25960 * 7 6 5 35 35 H 1.07998 * 119.86956 * 179.97438 * 8 7 6 36 36 H 0.97002 * 120.00226 * 204.84989 * 10 9 8 37 37 H 1.08997 * 109.47308 * 300.00328 * 13 11 10 38 38 H 1.08998 * 109.46766 * 59.99810 * 13 11 10 39 39 H 1.09002 * 109.47158 * 299.99878 * 14 13 11 40 40 H 1.08998 * 109.47634 * 60.00344 * 14 13 11 41 41 H 0.97003 * 119.99925 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0701 1.4315 0.0000 4 6 2.0783 -0.7929 1.2099 5 6 2.2647 -2.1773 0.6197 6 6 2.4527 -3.4131 1.2020 7 6 2.5745 -4.5415 0.4112 8 6 2.5179 -4.4260 -0.9651 9 6 2.3331 -3.1865 -1.5546 10 7 2.2710 -3.0781 -2.9503 11 6 1.8910 -4.1372 -3.6923 12 8 1.5071 -5.1515 -3.1493 13 6 1.9433 -4.0611 -5.1964 14 6 1.4632 -5.3865 -5.7911 15 6 1.5160 -5.3106 -7.2953 16 1 1.8575 -4.4071 -7.7787 17 6 1.1274 -6.3940 -8.0543 18 7 0.7112 -7.4939 -7.4656 19 14 1.1923 -6.2997 -9.9188 20 1 2.5884 -6.0397 -10.3529 21 1 0.7264 -7.5861 -10.4960 22 1 0.3143 -5.1985 -10.3896 23 6 2.2079 -2.0429 -0.7594 24 8 2.0396 -0.7408 -1.1221 25 1 -0.3634 0.4628 0.9175 26 1 -0.3633 0.5632 -0.8596 27 1 -0.3633 -1.0260 -0.0581 28 1 3.1584 1.4092 -0.0580 29 1 1.6713 1.9703 -0.8596 30 1 1.7653 1.9348 0.9175 31 1 1.3540 -0.8110 2.0242 32 1 3.0300 -0.3814 1.5462 33 1 2.5004 -3.5006 2.2773 34 1 2.7176 -5.5097 0.8678 35 1 2.6133 -5.3066 -1.5831 36 1 2.5013 -2.2408 -3.3825 37 1 1.2989 -3.2527 -5.5420 38 1 2.9680 -3.8702 -5.5151 39 1 2.1080 -6.1945 -5.4455 40 1 0.4385 -5.5778 -5.4724 41 1 0.4374 -8.2561 -7.9996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573859218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:03 Heat of formation + Delta-G solvation = -75.555858 kcal Electronic energy + Delta-G solvation = -22492.422471 eV Core-core repulsion = 19143.301641 eV Total energy + Delta-G solvation = -3349.120830 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.47445 -41.08162 -38.51240 -36.03762 -35.59089 -34.48842 -33.16003 -32.12304 -30.28644 -28.38016 -27.68969 -27.51753 -24.38623 -23.45665 -22.45321 -21.64118 -21.02160 -19.09030 -18.52040 -18.04745 -17.36031 -17.01619 -16.52962 -16.44776 -16.38916 -16.00170 -15.20286 -14.89222 -14.69506 -14.45258 -14.31022 -14.04138 -13.69983 -13.57650 -13.29530 -13.19071 -12.91102 -12.88475 -12.79545 -12.60288 -12.54519 -12.46865 -11.95473 -11.84291 -11.76023 -11.66719 -11.46751 -11.33307 -10.66778 -10.56907 -9.40443 -8.82812 -8.19204 -6.33443 0.21483 0.29977 1.41550 1.46119 1.53825 1.58889 2.02044 2.15766 2.42931 2.75624 3.13787 3.42831 3.52933 3.79832 3.86473 4.00253 4.06685 4.22640 4.33607 4.37458 4.47443 4.49936 4.64165 4.67479 4.71061 4.76293 4.86420 4.93767 4.98908 5.01623 5.13734 5.18985 5.27365 5.31488 5.46028 5.50675 5.52891 5.59436 5.73047 5.82685 6.15170 6.22835 6.39437 6.83744 7.12690 7.36683 8.93251 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026104 B = 0.003203 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.393262 B = 8740.181766 C = 9498.503616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.091 3.909 3 C -0.136 4.136 4 C -0.091 4.091 5 C -0.157 4.157 6 C -0.089 4.089 7 C -0.127 4.127 8 C -0.131 4.131 9 C 0.116 3.884 10 N -0.662 5.662 11 C 0.512 3.488 12 O -0.559 6.559 13 C -0.117 4.117 14 C 0.044 3.956 15 C -0.546 4.546 16 H 0.076 0.924 17 C -0.006 4.006 18 N -0.937 5.937 19 Si 0.974 3.026 20 H -0.262 1.262 21 H -0.287 1.287 22 H -0.263 1.263 23 C 0.061 3.939 24 O -0.315 6.315 25 H 0.102 0.898 26 H 0.065 0.935 27 H 0.039 0.961 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.125 0.875 36 H 0.423 0.577 37 H 0.106 0.894 38 H 0.109 0.891 39 H -0.014 1.014 40 H -0.016 1.016 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.168 19.849 20.738 29.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.054 3.946 3 C -0.193 4.193 4 C -0.128 4.128 5 C -0.159 4.159 6 C -0.107 4.107 7 C -0.146 4.146 8 C -0.151 4.151 9 C 0.021 3.979 10 N -0.307 5.307 11 C 0.302 3.698 12 O -0.437 6.437 13 C -0.156 4.156 14 C 0.006 3.994 15 C -0.584 4.584 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.798 3.202 20 H -0.187 1.187 21 H -0.212 1.212 22 H -0.187 1.187 23 C 0.014 3.986 24 O -0.230 6.230 25 H 0.121 0.879 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.177 0.823 34 H 0.167 0.833 35 H 0.143 0.857 36 H 0.261 0.739 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.005 0.995 40 H 0.003 0.997 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.875 19.091 20.801 28.498 hybrid contribution -0.128 -0.475 -1.317 1.406 sum 3.746 18.616 19.484 27.207 Atomic orbital electron populations 1.22226 0.93262 1.02046 1.04397 1.23097 0.94664 0.93778 0.83070 1.21865 1.01857 0.91047 1.04524 1.21977 1.04008 0.88635 0.98139 1.21022 1.05279 0.97191 0.92367 1.20628 0.99130 0.89612 1.01350 1.21230 1.01318 1.00193 0.91834 1.21238 1.01126 0.95968 0.96762 1.17412 1.05777 0.92059 0.82666 1.43541 1.66765 1.15956 1.04487 1.21586 0.74816 0.82182 0.91218 1.90618 1.46267 1.32486 1.74323 1.21673 1.04713 1.01681 0.87575 1.18684 0.94504 0.91476 0.94729 1.21670 1.44200 1.00394 0.92119 0.90626 1.26129 0.94572 0.94861 1.04771 1.70167 1.44911 1.04697 1.37857 0.85367 0.79212 0.77481 0.78148 1.18695 1.21249 1.18727 1.19213 1.01607 0.84567 0.93255 1.86843 1.80717 1.15517 1.39949 0.87890 0.91639 0.94159 0.91478 0.91502 0.87588 0.86718 0.87293 0.82302 0.83311 0.85692 0.73911 0.87583 0.87332 0.99523 0.99723 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 8.86 71.98 0.64 -1.85 16 2 C 0.09 1.47 1.26 -10.21 -0.01 1.46 16 3 C -0.14 -1.42 8.95 71.98 0.64 -0.77 16 4 C -0.09 -1.26 6.18 30.73 0.19 -1.07 16 5 C -0.16 -3.45 6.26 -19.54 -0.12 -3.57 16 6 C -0.09 -1.83 10.03 22.21 0.22 -1.61 16 7 C -0.13 -3.27 10.06 22.29 0.22 -3.04 16 8 C -0.13 -4.42 8.70 22.33 0.19 -4.23 16 9 C 0.12 3.82 6.45 38.27 0.25 4.07 16 10 N -0.66 -22.09 5.37 -302.88 -1.63 -23.72 16 11 C 0.51 21.19 7.63 87.66 0.67 21.86 16 12 O -0.56 -27.90 13.14 -3.06 -0.04 -27.94 16 13 C -0.12 -4.86 5.64 29.85 0.17 -4.70 16 14 C 0.04 2.47 4.26 29.85 0.13 2.59 16 15 C -0.55 -31.46 9.11 25.60 0.23 -31.22 16 16 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 17 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 18 N -0.94 -59.83 13.29 21.45 0.28 -59.54 16 19 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 22 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 23 C 0.06 1.68 6.79 22.77 0.15 1.84 16 24 O -0.31 -7.80 10.54 -96.01 -1.01 -8.82 16 25 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.04 0.82 8.07 -2.39 -0.02 0.80 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.11 1.06 7.92 -2.39 -0.02 1.04 16 32 H 0.11 1.15 7.92 -2.39 -0.02 1.13 16 33 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 34 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 35 H 0.13 5.00 5.76 -2.91 -0.02 4.99 16 36 H 0.42 11.52 8.79 -92.71 -0.81 10.70 16 37 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 38 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 39 H -0.01 -0.86 8.10 -2.39 -0.02 -0.88 16 40 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16 41 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -78.46 342.67 3.89 -74.57 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.22 Total: 18.85 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 4.04 Total: -20.12 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -1.34 Total: -83.26 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -1.05 Total: -36.76 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -78.46 3.89 -74.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573859218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.984 kcal (2) G-P(sol) polarization free energy of solvation -78.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds