Wall clock time and date at job start Tue Mar 31 2020 06:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35648 * 117.00295 * 2 1 4 4 C 1.38715 * 120.15095 * 0.02562 * 3 2 1 5 5 C 1.38053 * 120.08558 * 179.74778 * 4 3 2 6 6 C 1.50700 * 119.80270 * 179.97438 * 5 4 3 7 7 C 1.38548 * 120.39454 * 359.97438 * 5 4 3 8 8 C 1.37787 * 120.29770 * 0.02562 * 7 5 4 9 9 C 1.39714 * 119.90810 * 0.02562 * 8 7 5 10 10 C 1.47537 * 120.19143 * 180.02562 * 9 8 7 11 11 O 1.21590 * 120.00068 * 174.47464 * 10 9 8 12 12 N 1.34779 * 119.99533 * 354.47420 * 10 9 8 13 13 C 1.46505 * 119.99379 * 184.86224 * 12 10 9 14 14 C 1.53000 * 109.46960 * 185.06555 * 13 12 10 15 15 C 1.50707 * 115.54891 * 56.03368 * 14 13 12 16 16 H 1.08002 * 119.99854 * 267.72543 * 15 14 13 17 17 C 1.37867 * 119.99691 * 87.72164 * 15 14 13 18 18 N 1.31518 * 119.99912 * 179.06649 * 17 15 14 19 19 Si 1.86799 * 120.00348 * 359.06942 * 17 15 14 20 20 H 1.48503 * 109.47396 * 91.45777 * 19 17 15 21 21 H 1.48499 * 109.47328 * 211.46096 * 19 17 15 22 22 H 1.48501 * 109.47048 * 331.45659 * 19 17 15 23 23 C 1.53002 * 117.49863 * 270.36731 * 14 13 12 24 24 C 1.52997 * 117.49989 * 201.70655 * 14 13 12 25 25 H 1.09001 * 109.47278 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47279 * 300.00110 * 1 2 3 27 27 H 1.09000 * 109.47252 * 59.99981 * 1 2 3 28 28 H 1.07995 * 119.95123 * 359.71944 * 4 3 2 29 29 H 1.09009 * 109.46980 * 90.00189 * 6 5 4 30 30 H 1.08996 * 109.47311 * 209.99824 * 6 5 4 31 31 H 1.09000 * 109.47231 * 330.00490 * 6 5 4 32 32 H 1.07999 * 119.85143 * 180.02562 * 7 5 4 33 33 H 1.08002 * 120.04470 * 180.02562 * 8 7 5 34 34 H 0.96997 * 120.00772 * 4.86308 * 12 10 9 35 35 H 1.08996 * 109.47603 * 305.06610 * 13 12 10 36 36 H 1.09005 * 109.46836 * 65.06972 * 13 12 10 37 37 H 0.97003 * 120.00077 * 180.02562 * 18 17 15 38 38 H 1.08995 * 117.50211 * 359.97438 * 23 14 13 39 39 H 1.09002 * 117.49524 * 145.02104 * 23 14 13 40 40 H 1.08999 * 117.49674 * 214.97762 * 24 14 13 41 41 H 1.09000 * 117.50166 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2924 2.3740 0.0005 5 6 1.9206 3.6033 0.0058 6 6 1.0970 4.8653 0.0058 7 6 3.3038 3.6837 0.0111 8 6 4.0668 2.5363 0.0107 9 6 3.4441 1.2856 0.0043 10 6 4.2549 0.0531 0.0043 11 8 3.7131 -1.0312 0.1002 12 7 5.5964 0.1291 -0.1019 13 6 6.3931 -1.0957 -0.2091 14 6 7.8810 -0.7396 -0.1896 15 6 8.3436 0.0544 1.0048 16 1 8.3598 1.1335 0.9626 17 6 8.7461 -0.5968 2.1514 18 7 9.1673 0.0954 3.1874 19 14 8.6934 -2.4622 2.2336 20 1 10.0008 -3.0142 1.7960 21 1 8.4183 -2.8887 3.6292 22 1 7.6193 -2.9669 1.3411 23 6 8.5567 -0.4543 -1.5324 24 6 8.8584 -1.7553 -0.7844 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.2139 2.3194 -0.0036 29 1 0.8947 5.1671 1.0335 30 1 1.6456 5.6572 -0.5041 31 1 0.1550 4.6844 -0.5119 32 1 3.7861 4.6500 0.0156 33 1 5.1447 2.6037 0.0152 34 1 6.0343 0.9945 -0.1073 35 1 6.1656 -1.7520 0.6308 36 1 6.1535 -1.6044 -1.1430 37 1 9.4509 -0.3628 3.9940 38 1 7.9415 -0.5207 -2.4296 39 1 9.3363 0.3074 -1.5516 40 1 9.8362 -1.8490 -0.3120 41 1 8.4415 -2.6775 -1.1892 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576692680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:26 Heat of formation + Delta-G solvation = -24.756315 kcal Electronic energy + Delta-G solvation = -22834.663310 eV Core-core repulsion = 19487.745314 eV Total energy + Delta-G solvation = -3346.917997 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.43344 -38.62960 -37.54148 -36.89925 -33.47662 -32.61792 -32.10438 -30.15504 -28.16669 -27.44244 -26.11505 -24.97671 -22.48299 -21.94854 -21.66875 -19.89546 -19.29925 -17.89326 -16.89262 -16.44481 -16.06951 -15.77726 -15.02822 -14.89760 -14.63042 -14.36370 -14.22298 -13.78832 -13.76336 -13.62507 -12.85531 -12.72354 -12.49986 -12.41759 -12.20264 -12.14349 -11.89628 -11.48169 -11.16452 -11.13588 -10.95517 -10.71034 -10.48468 -10.15659 -9.65330 -9.28338 -9.13378 -8.88444 -8.61953 -8.55727 -8.26330 -8.03577 -6.14054 -4.18649 0.95804 1.42346 3.21470 3.29689 3.31095 3.41769 3.47779 3.81485 4.07355 4.42812 4.58337 4.72071 4.88972 4.95460 5.03829 5.08092 5.13412 5.16474 5.35115 5.39349 5.41915 5.46942 5.59299 5.61984 5.73400 5.93176 6.04058 6.10515 6.17355 6.27673 6.30026 6.45124 6.47384 6.58332 6.71762 6.73959 7.01741 7.10412 7.24553 7.42107 7.70219 8.30275 8.42113 8.84950 8.92126 9.49601 10.97121 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019415 B = 0.004378 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.850051 B = 6394.205238 C = 6811.331542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.279 6.279 3 C 0.183 3.817 4 C -0.226 4.226 5 C -0.029 4.029 6 C -0.117 4.117 7 C -0.168 4.168 8 C -0.040 4.040 9 C -0.167 4.167 10 C 0.551 3.449 11 O -0.538 6.538 12 N -0.699 5.699 13 C 0.157 3.843 14 C -0.016 4.016 15 C -0.490 4.490 16 H 0.078 0.922 17 C 0.081 3.919 18 N -0.895 5.895 19 Si 0.878 3.122 20 H -0.279 1.279 21 H -0.294 1.294 22 H -0.256 1.256 23 C -0.179 4.179 24 C -0.193 4.193 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.131 0.869 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.402 0.598 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.265 0.735 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.626 7.057 -7.820 18.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.189 6.189 3 C 0.135 3.865 4 C -0.244 4.244 5 C -0.029 4.029 6 C -0.174 4.174 7 C -0.186 4.186 8 C -0.059 4.059 9 C -0.171 4.171 10 C 0.338 3.662 11 O -0.417 6.417 12 N -0.349 5.349 13 C 0.033 3.967 14 C -0.018 4.018 15 C -0.527 4.527 16 H 0.096 0.904 17 C -0.122 4.122 18 N -0.532 5.532 19 Si 0.706 3.294 20 H -0.205 1.205 21 H -0.221 1.221 22 H -0.180 1.180 23 C -0.216 4.216 24 C -0.231 4.231 25 H 0.118 0.882 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.148 0.852 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.147 0.853 33 H 0.156 0.844 34 H 0.238 0.762 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.842 6.041 -7.571 18.568 hybrid contribution 0.110 -0.453 0.272 0.540 sum -15.732 5.588 -7.299 18.221 Atomic orbital electron populations 1.23118 0.79284 1.04044 1.00887 1.86408 1.20276 1.25496 1.86762 1.19026 0.91023 0.84649 0.91773 1.21023 0.99872 0.91542 1.11999 1.19829 0.94047 0.94464 0.94606 1.20856 0.99262 0.94610 1.02635 1.20866 0.92926 0.98613 1.06193 1.21305 1.00435 0.90656 0.93479 1.19514 0.90792 0.94546 1.12254 1.17950 0.82382 0.88316 0.77595 1.90763 1.71990 1.28929 1.49993 1.45717 1.05279 1.10983 1.72926 1.21099 0.90384 0.85585 0.99613 1.19636 0.88903 0.99161 0.94058 1.20149 1.44008 0.93902 0.94645 0.90398 1.24949 0.93697 0.98335 0.95193 1.69883 1.43039 1.36016 1.04230 0.86870 0.79212 0.86231 0.77075 1.20472 1.22091 1.17988 1.22874 1.04102 0.99201 0.95458 1.22932 1.01689 0.92703 1.05798 0.88184 0.92795 0.92877 0.85166 0.90718 0.91077 0.91531 0.85326 0.84360 0.76189 0.91623 0.93960 0.92510 0.90875 0.89415 0.89182 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.28 -4.55 8.58 -40.45 -0.35 -4.89 16 3 C 0.18 2.88 6.70 -38.69 -0.26 2.62 16 4 C -0.23 -2.74 8.67 -39.47 -0.34 -3.09 16 5 C -0.03 -0.32 5.88 -104.58 -0.62 -0.94 16 6 C -0.12 -0.88 10.00 36.01 0.36 -0.52 16 7 C -0.17 -1.99 9.67 -39.63 -0.38 -2.38 16 8 C -0.04 -0.57 9.53 -39.20 -0.37 -0.94 16 9 C -0.17 -2.87 5.89 -104.84 -0.62 -3.48 16 10 C 0.55 11.35 7.75 -12.47 -0.10 11.25 16 11 O -0.54 -12.78 15.16 -16.52 -0.25 -13.03 16 12 N -0.70 -14.12 5.31 -61.34 -0.33 -14.45 16 13 C 0.16 3.44 5.34 -4.04 -0.02 3.42 16 14 C -0.02 -0.37 0.93 -155.66 -0.14 -0.51 16 15 C -0.49 -12.91 8.89 -34.44 -0.31 -13.21 16 16 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 17 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 18 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 19 Si 0.88 21.81 24.88 -169.99 -4.23 17.58 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 22 H -0.26 -6.16 5.62 56.52 0.32 -5.84 16 23 C -0.18 -3.47 9.93 -26.69 -0.27 -3.74 16 24 C -0.19 -4.02 7.56 -26.69 -0.20 -4.22 16 25 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 27 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 28 H 0.13 1.23 6.30 -52.49 -0.33 0.90 16 29 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.14 1.83 6.43 -52.49 -0.34 1.50 16 34 H 0.40 7.48 6.23 -40.82 -0.25 7.22 16 35 H 0.07 1.60 6.51 -51.93 -0.34 1.26 16 36 H 0.04 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 40 H 0.09 1.96 7.16 -51.93 -0.37 1.58 16 41 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 337.09 15.07 5.08 5.08 Total: -1.00 -33.11 337.09 -7.54 -40.64 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.87 Total: 7.24 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -2.37 Total: -12.34 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.45 Total: -40.27 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.60 Total: -17.93 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.23 Total: 17.58 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.11 -7.54 -40.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576692680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.887 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds