Wall clock time and date at job start Tue Mar 31 2020 06:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35648 * 117.00295 * 2 1 4 4 C 1.38715 * 120.15095 * 0.02562 * 3 2 1 5 5 C 1.38053 * 120.08558 * 179.74778 * 4 3 2 6 6 C 1.50700 * 119.80270 * 179.97438 * 5 4 3 7 7 C 1.38548 * 120.39454 * 359.97438 * 5 4 3 8 8 C 1.37787 * 120.29770 * 0.02562 * 7 5 4 9 9 C 1.39714 * 119.90810 * 0.02562 * 8 7 5 10 10 C 1.47537 * 120.19143 * 180.02562 * 9 8 7 11 11 O 1.21590 * 120.00068 * 174.47464 * 10 9 8 12 12 N 1.34779 * 119.99533 * 354.47420 * 10 9 8 13 13 C 1.46505 * 119.99379 * 184.86224 * 12 10 9 14 14 C 1.53000 * 109.46960 * 185.06555 * 13 12 10 15 15 C 1.50707 * 115.54891 * 56.03368 * 14 13 12 16 16 H 1.08002 * 119.99854 * 267.72543 * 15 14 13 17 17 C 1.37867 * 119.99691 * 87.72164 * 15 14 13 18 18 N 1.31518 * 119.99912 * 179.06649 * 17 15 14 19 19 Si 1.86799 * 120.00348 * 359.06942 * 17 15 14 20 20 H 1.48503 * 109.47396 * 91.45777 * 19 17 15 21 21 H 1.48499 * 109.47328 * 211.46096 * 19 17 15 22 22 H 1.48501 * 109.47048 * 331.45659 * 19 17 15 23 23 C 1.53002 * 117.49863 * 270.36731 * 14 13 12 24 24 C 1.52997 * 117.49989 * 201.70655 * 14 13 12 25 25 H 1.09001 * 109.47278 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47279 * 300.00110 * 1 2 3 27 27 H 1.09000 * 109.47252 * 59.99981 * 1 2 3 28 28 H 1.07995 * 119.95123 * 359.71944 * 4 3 2 29 29 H 1.09009 * 109.46980 * 90.00189 * 6 5 4 30 30 H 1.08996 * 109.47311 * 209.99824 * 6 5 4 31 31 H 1.09000 * 109.47231 * 330.00490 * 6 5 4 32 32 H 1.07999 * 119.85143 * 180.02562 * 7 5 4 33 33 H 1.08002 * 120.04470 * 180.02562 * 8 7 5 34 34 H 0.96997 * 120.00772 * 4.86308 * 12 10 9 35 35 H 1.08996 * 109.47603 * 305.06610 * 13 12 10 36 36 H 1.09005 * 109.46836 * 65.06972 * 13 12 10 37 37 H 0.97003 * 120.00077 * 180.02562 * 18 17 15 38 38 H 1.08995 * 117.50211 * 359.97438 * 23 14 13 39 39 H 1.09002 * 117.49524 * 145.02104 * 23 14 13 40 40 H 1.08999 * 117.49674 * 214.97762 * 24 14 13 41 41 H 1.09000 * 117.50166 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2924 2.3740 0.0005 5 6 1.9206 3.6033 0.0058 6 6 1.0970 4.8653 0.0058 7 6 3.3038 3.6837 0.0111 8 6 4.0668 2.5363 0.0107 9 6 3.4441 1.2856 0.0043 10 6 4.2549 0.0531 0.0043 11 8 3.7131 -1.0312 0.1002 12 7 5.5964 0.1291 -0.1019 13 6 6.3931 -1.0957 -0.2091 14 6 7.8810 -0.7396 -0.1896 15 6 8.3436 0.0544 1.0048 16 1 8.3598 1.1335 0.9626 17 6 8.7461 -0.5968 2.1514 18 7 9.1673 0.0954 3.1874 19 14 8.6934 -2.4622 2.2336 20 1 10.0008 -3.0142 1.7960 21 1 8.4183 -2.8887 3.6292 22 1 7.6193 -2.9669 1.3411 23 6 8.5567 -0.4543 -1.5324 24 6 8.8584 -1.7553 -0.7844 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.2139 2.3194 -0.0036 29 1 0.8947 5.1671 1.0335 30 1 1.6456 5.6572 -0.5041 31 1 0.1550 4.6844 -0.5119 32 1 3.7861 4.6500 0.0156 33 1 5.1447 2.6037 0.0152 34 1 6.0343 0.9945 -0.1073 35 1 6.1656 -1.7520 0.6308 36 1 6.1535 -1.6044 -1.1430 37 1 9.4509 -0.3628 3.9940 38 1 7.9415 -0.5207 -2.4296 39 1 9.3363 0.3074 -1.5516 40 1 9.8362 -1.8490 -0.3120 41 1 8.4415 -2.6775 -1.1892 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576692680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:26 Heat of formation + Delta-G solvation = -45.884204 kcal Electronic energy + Delta-G solvation = -22835.579484 eV Core-core repulsion = 19487.745314 eV Total energy + Delta-G solvation = -3347.834170 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58537 -40.11114 -38.67355 -38.49441 -35.06375 -34.23084 -33.65541 -31.15377 -29.19678 -28.57494 -27.75942 -26.60683 -23.60243 -23.30659 -22.94806 -21.33333 -21.05885 -19.25135 -18.34044 -17.87413 -17.42377 -16.93924 -16.75515 -16.30189 -16.03902 -15.83133 -15.35519 -15.09530 -14.79954 -14.66495 -14.53575 -14.29951 -14.14477 -13.83672 -13.10862 -13.09488 -13.00219 -12.99852 -12.62968 -12.36898 -12.18991 -12.10068 -11.99337 -11.85706 -11.58740 -11.01153 -10.88753 -10.64429 -10.34533 -9.98530 -9.76562 -9.18435 -8.30609 -6.36070 -0.13575 0.41353 1.31273 1.38217 1.48658 1.92213 2.29072 2.35673 2.36875 2.83971 3.05286 3.23536 3.69919 3.77840 3.99446 4.04190 4.14202 4.31651 4.32123 4.35935 4.37026 4.40771 4.52530 4.54700 4.68515 4.69021 4.82426 4.84322 4.87026 4.88488 5.08996 5.15738 5.25509 5.28298 5.31133 5.48916 5.55039 5.59811 5.70176 5.79534 6.27848 6.43074 6.70038 6.75775 7.33850 7.35998 8.83744 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019415 B = 0.004378 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.850051 B = 6394.205238 C = 6811.331542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.169 3.831 4 C -0.222 4.222 5 C -0.017 4.017 6 C -0.116 4.116 7 C -0.168 4.168 8 C -0.046 4.046 9 C -0.208 4.208 10 C 0.547 3.453 11 O -0.580 6.580 12 N -0.699 5.699 13 C 0.165 3.835 14 C -0.043 4.043 15 C -0.475 4.475 16 H 0.049 0.951 17 C 0.029 3.971 18 N -0.942 5.942 19 Si 0.925 3.075 20 H -0.264 1.264 21 H -0.304 1.304 22 H -0.245 1.245 23 C -0.151 4.151 24 C -0.192 4.192 25 H 0.108 0.892 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.161 0.839 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.157 0.843 33 H 0.138 0.862 34 H 0.408 0.592 35 H 0.034 0.966 36 H 0.057 0.943 37 H 0.264 0.736 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.373 8.329 -9.554 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.231 6.231 3 C 0.121 3.879 4 C -0.241 4.241 5 C -0.018 4.018 6 C -0.172 4.172 7 C -0.186 4.186 8 C -0.065 4.065 9 C -0.211 4.211 10 C 0.336 3.664 11 O -0.462 6.462 12 N -0.349 5.349 13 C 0.041 3.959 14 C -0.044 4.044 15 C -0.513 4.513 16 H 0.068 0.932 17 C -0.169 4.169 18 N -0.581 5.581 19 Si 0.751 3.249 20 H -0.189 1.189 21 H -0.232 1.232 22 H -0.169 1.169 23 C -0.188 4.188 24 C -0.230 4.230 25 H 0.126 0.874 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.178 0.822 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.175 0.825 33 H 0.156 0.844 34 H 0.245 0.755 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.586 7.332 -9.336 21.218 hybrid contribution 0.547 -0.703 0.776 1.182 sum -17.039 6.629 -8.560 20.188 Atomic orbital electron populations 1.23427 0.76661 1.05357 1.02698 1.86344 1.23234 1.26543 1.86930 1.19293 0.90821 0.85684 0.92151 1.21355 1.01208 0.90609 1.10918 1.20348 0.94124 0.95686 0.91621 1.20966 0.99536 0.92840 1.03875 1.21230 0.93521 0.98785 1.05061 1.21388 1.00738 0.90622 0.93729 1.19426 0.91534 0.93801 1.16386 1.18562 0.82374 0.89211 0.76285 1.90714 1.72638 1.30763 1.52066 1.45709 1.05440 1.10750 1.73013 1.20889 0.90139 0.85943 0.98969 1.19475 0.89368 1.01056 0.94470 1.20322 1.42042 0.93059 0.95881 0.93240 1.25643 0.94088 1.02009 0.95169 1.70003 1.45589 1.37520 1.05030 0.86106 0.80053 0.82127 0.76593 1.18885 1.23207 1.16906 1.22912 1.03133 0.98145 0.94575 1.22999 1.00483 0.94045 1.05440 0.87352 0.91149 0.90691 0.82180 0.89436 0.89570 0.89809 0.82548 0.84424 0.75511 0.94750 0.92505 0.92723 0.87935 0.89295 0.90173 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.81 113.37 1.11 1.36 16 2 O -0.32 -10.48 8.58 -68.77 -0.59 -11.07 16 3 C 0.17 5.24 6.70 22.85 0.15 5.40 16 4 C -0.22 -4.87 8.67 22.34 0.19 -4.67 16 5 C -0.02 -0.33 5.88 -19.83 -0.12 -0.45 16 6 C -0.12 -1.21 10.00 71.24 0.71 -0.50 16 7 C -0.17 -3.61 9.67 22.24 0.22 -3.39 16 8 C -0.05 -1.30 9.53 22.52 0.21 -1.09 16 9 C -0.21 -7.26 5.89 -20.01 -0.12 -7.37 16 10 C 0.55 23.35 7.75 86.70 0.67 24.02 16 11 O -0.58 -28.74 15.16 16.86 0.26 -28.48 16 12 N -0.70 -28.94 5.31 -466.25 -2.48 -31.42 16 13 C 0.16 7.26 5.34 86.38 0.46 7.72 16 14 C -0.04 -1.88 0.93 -52.93 -0.05 -1.93 16 15 C -0.48 -25.53 8.89 25.60 0.23 -25.30 16 16 H 0.05 2.87 8.06 -2.91 -0.02 2.85 16 17 C 0.03 1.67 5.47 84.65 0.46 2.13 16 18 N -0.94 -57.83 13.96 21.44 0.30 -57.53 16 19 Si 0.92 45.47 24.88 68.60 1.71 47.18 16 20 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 21 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 22 H -0.25 -11.57 5.62 99.48 0.56 -11.01 16 23 C -0.15 -5.49 9.93 30.62 0.30 -5.19 16 24 C -0.19 -7.58 7.56 30.62 0.23 -7.35 16 25 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.07 1.09 7.67 -2.38 -0.02 1.07 16 27 H 0.07 1.08 7.66 -2.39 -0.02 1.06 16 28 H 0.16 2.42 6.30 -2.91 -0.02 2.40 16 29 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.09 0.70 8.08 -2.39 -0.02 0.68 16 31 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 32 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.14 3.72 6.43 -2.91 -0.02 3.70 16 34 H 0.41 15.62 6.23 -92.71 -0.58 15.04 16 35 H 0.03 1.71 6.51 -2.39 -0.02 1.70 16 36 H 0.06 2.32 8.10 -2.38 -0.02 2.30 16 37 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.08 3.34 7.16 -2.39 -0.02 3.32 16 41 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -75.14 337.09 4.19 -70.95 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.32 Total: 26.98 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 4.68 Total: -16.61 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -2.18 Total: -88.95 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -0.33 Total: -39.55 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.71 Total: 47.18 kcal Total: -75.14 4.19 -70.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576692680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.070 kcal (2) G-P(sol) polarization free energy of solvation -75.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds