Wall clock time and date at job start Tue Mar 31 2020 06:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 119.99988 * 2 1 4 4 N 1.46510 * 109.47179 * 125.00142 * 3 2 1 5 5 C 1.46491 * 120.00116 * 270.00483 * 4 3 2 6 6 C 1.50703 * 109.47362 * 269.99548 * 5 4 3 7 7 H 1.07998 * 119.99311 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00304 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99901 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00011 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46982 * 60.00047 * 10 8 6 12 12 H 1.48502 * 109.47227 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47126 * 299.99886 * 10 8 6 14 14 C 1.34779 * 119.99432 * 89.99782 * 4 3 2 15 15 O 1.21280 * 119.99417 * 180.02562 * 14 4 3 16 16 C 1.50697 * 120.00282 * 0.02562 * 14 4 3 17 17 O 1.42903 * 109.47103 * 179.97438 * 16 14 4 18 18 C 1.35899 * 116.99930 * 180.02562 * 17 16 14 19 19 C 1.38747 * 120.05586 * 359.97438 * 18 17 16 20 20 C 1.38125 * 119.94590 * 180.02562 * 19 18 17 21 21 C 1.38289 * 120.05159 * 359.97438 * 20 19 18 22 22 C 1.38243 * 120.11362 * 0.02562 * 21 20 19 23 23 C 1.38163 * 120.05438 * 359.97438 * 22 21 20 24 24 C 1.50708 * 120.02715 * 179.97438 * 23 22 21 25 25 H 1.08009 * 119.99764 * 359.97438 * 1 2 3 26 26 H 1.07993 * 120.00067 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.00143 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47369 * 5.00804 * 3 2 1 29 29 H 1.08993 * 109.47744 * 245.00191 * 3 2 1 30 30 H 1.08999 * 109.47260 * 29.99515 * 5 4 3 31 31 H 1.09001 * 109.47275 * 149.99511 * 5 4 3 32 32 H 0.97002 * 119.99573 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.47303 * 59.99588 * 16 14 4 34 34 H 1.08995 * 109.46897 * 299.99667 * 16 14 4 35 35 H 1.08000 * 120.03046 * 0.02562 * 19 18 17 36 36 H 1.07993 * 119.97844 * 179.72247 * 20 19 18 37 37 H 1.08004 * 119.94567 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.97538 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.47128 * 270.02582 * 24 23 22 40 40 H 1.08999 * 109.46873 * 30.02607 * 24 23 22 41 41 H 1.09000 * 109.47139 * 150.02308 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5590 1.8648 2.4249 6 6 2.8444 3.3435 2.4806 7 1 3.3034 3.8369 1.6367 8 6 2.5195 4.0663 3.6088 9 7 1.9601 3.4654 4.6363 10 14 2.8726 5.8993 3.6776 11 1 2.1358 6.5866 2.5867 12 1 2.4319 6.4396 4.9887 13 1 4.3303 6.1292 3.5117 14 6 4.2498 0.8661 0.9823 15 8 5.0197 0.8878 1.9191 16 6 4.6972 0.3183 -0.3484 17 8 6.0575 -0.1092 -0.2544 18 6 6.6188 -0.6321 -1.3762 19 6 5.8753 -0.7321 -2.5434 20 6 6.4479 -1.2644 -3.6821 21 6 7.7612 -1.6969 -3.6596 22 6 8.5041 -1.5983 -2.4979 23 6 7.9359 -1.0666 -1.3563 24 6 8.7462 -0.9599 -0.0900 25 1 -0.5400 0.9354 0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0897 29 1 2.6213 1.4027 -0.9313 30 1 1.4889 1.6965 2.5460 31 1 3.0991 1.3601 3.2260 32 1 1.7312 3.9740 5.4299 33 1 4.6125 1.0952 -1.1082 34 1 4.0680 -0.5284 -0.6228 35 1 4.8497 -0.3941 -2.5616 36 1 5.8683 -1.3467 -4.5896 37 1 8.2071 -2.1132 -4.5509 38 1 9.5295 -1.9371 -2.4827 39 1 8.6275 -1.8718 0.4952 40 1 9.7979 -0.8241 -0.3421 41 1 8.3991 -0.1065 0.4926 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590039656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:51 Heat of formation + Delta-G solvation = -26.187918 kcal Electronic energy + Delta-G solvation = -22516.188533 eV Core-core repulsion = 19169.208458 eV Total energy + Delta-G solvation = -3346.980075 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.37687 -39.03253 -37.22006 -35.70070 -33.25935 -32.85576 -32.14161 -30.27501 -29.01545 -27.07632 -26.62096 -25.45894 -23.13695 -21.93340 -21.55790 -20.06164 -18.58993 -18.15249 -16.59944 -16.56135 -16.05133 -15.90137 -15.59978 -15.26250 -14.68363 -14.35799 -14.30744 -14.07141 -13.51842 -13.18538 -13.00934 -12.88906 -12.31662 -12.28777 -12.24010 -11.95573 -11.77524 -11.39665 -11.33903 -11.18312 -10.95637 -10.92068 -10.90076 -10.61485 -10.21319 -9.70302 -9.27798 -8.99756 -8.91714 -8.45412 -8.14248 -7.79664 -6.06731 -4.11967 1.23029 1.37665 2.34936 2.95924 3.23662 3.31000 3.35639 3.39673 3.67724 4.08626 4.43097 4.67893 4.72650 4.89673 4.96374 4.99611 5.13187 5.20763 5.24834 5.27467 5.32029 5.34063 5.50860 5.55058 5.63476 5.77028 5.81640 5.93419 6.09644 6.23501 6.26320 6.39217 6.46720 6.70452 6.71267 6.82524 6.98928 7.37439 7.39065 7.48756 7.89025 8.18775 8.26429 8.83207 8.97710 9.53121 11.01422 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017141 B = 0.003990 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.088990 B = 7016.599816 C = 8024.029163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.173 4.173 3 C 0.133 3.867 4 N -0.589 5.589 5 C 0.250 3.750 6 C -0.530 4.530 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.894 5.894 10 Si 0.899 3.101 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.508 3.492 15 O -0.515 6.515 16 C 0.041 3.959 17 O -0.284 6.284 18 C 0.133 3.867 19 C -0.209 4.209 20 C -0.087 4.087 21 C -0.161 4.161 22 C -0.085 4.085 23 C -0.115 4.115 24 C -0.108 4.108 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.850 -10.270 -16.992 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.193 4.193 3 C 0.009 3.991 4 N -0.322 5.322 5 C 0.131 3.869 6 C -0.569 4.569 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.292 3.708 15 O -0.390 6.390 16 C -0.038 4.038 17 O -0.195 6.195 18 C 0.087 3.913 19 C -0.228 4.228 20 C -0.105 4.105 21 C -0.179 4.179 22 C -0.103 4.103 23 C -0.116 4.116 24 C -0.165 4.165 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.278 -10.167 -16.053 19.721 hybrid contribution -0.237 0.984 -0.219 1.035 sum 5.042 -9.183 -16.272 19.353 Atomic orbital electron populations 1.23839 0.95792 1.01896 0.99950 1.23412 0.96522 0.98867 1.00465 1.20647 0.93312 0.95726 0.89403 1.48168 1.09740 1.60338 1.13976 1.19318 0.95505 0.93798 0.78267 1.21389 1.40902 0.93244 1.01379 0.92434 1.24925 0.94956 0.98825 0.95266 1.69925 1.41807 1.36330 1.05176 0.86552 0.78893 0.84767 0.77181 1.20231 1.21134 1.20119 1.19720 0.82958 0.79532 0.88543 1.90722 1.52187 1.54886 1.41209 1.22707 0.82171 1.00113 0.98798 1.86191 1.26469 1.75045 1.31833 1.18974 0.92586 0.93954 0.85835 1.21280 1.00899 1.07178 0.93420 1.20894 0.95125 0.97088 0.97395 1.21000 0.94850 1.03758 0.98298 1.20871 0.99692 0.97988 0.91767 1.19326 0.92100 1.02792 0.97333 1.20647 0.98207 1.03337 0.94320 0.88156 0.88669 0.87792 0.88967 0.91007 0.94640 0.93731 0.92598 0.89611 0.89711 0.85419 0.85967 0.86134 0.85551 0.91330 0.91887 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 14.32 29.01 0.42 -1.75 16 2 C -0.17 -2.33 9.74 -36.03 -0.35 -2.68 16 3 C 0.13 2.05 5.65 -5.19 -0.03 2.02 16 4 N -0.59 -12.21 2.44 -176.44 -0.43 -12.64 16 5 C 0.25 6.46 5.16 -5.20 -0.03 6.43 16 6 C -0.53 -14.91 9.39 -34.44 -0.32 -15.24 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 10 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.51 10.70 7.75 -10.99 -0.09 10.62 16 15 O -0.52 -13.45 16.08 -14.35 -0.23 -13.68 16 16 C 0.04 0.64 3.77 36.00 0.14 0.77 16 17 O -0.28 -4.87 8.72 -39.33 -0.34 -5.22 16 18 C 0.13 1.91 6.66 -39.22 -0.26 1.65 16 19 C -0.21 -2.49 9.04 -39.43 -0.36 -2.85 16 20 C -0.09 -0.89 10.04 -39.60 -0.40 -1.28 16 21 C -0.16 -1.58 10.04 -39.56 -0.40 -1.98 16 22 C -0.09 -0.91 9.70 -39.61 -0.38 -1.30 16 23 C -0.11 -1.51 5.89 -104.47 -0.62 -2.13 16 24 C -0.11 -1.35 9.79 36.01 0.35 -1.00 16 25 H 0.10 1.20 7.84 -52.48 -0.41 0.79 16 26 H 0.09 1.00 8.06 -52.49 -0.42 0.58 16 27 H 0.10 1.31 7.83 -52.48 -0.41 0.90 16 28 H 0.09 1.47 7.72 -51.93 -0.40 1.07 16 29 H 0.07 0.89 6.44 -51.93 -0.33 0.55 16 30 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 31 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.09 1.14 6.92 -51.93 -0.36 0.78 16 34 H 0.09 1.08 7.30 -51.93 -0.38 0.70 16 35 H 0.13 1.30 6.30 -52.49 -0.33 0.97 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 41 H 0.08 1.14 7.53 -51.93 -0.39 0.75 16 LS Contribution 351.74 15.07 5.30 5.30 Total: -1.00 -33.76 351.74 -8.31 -42.07 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.90 Total: 0.14 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -2.42 Total: -7.02 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.31 Total: -38.35 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.57 Total: -18.89 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.76 -8.31 -42.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590039656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.881 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds