Wall clock time and date at job start Tue Mar 31 2020 07:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.54680 * 2 1 4 4 O 1.21286 * 119.99786 * 239.83015 * 3 2 1 5 5 N 1.34774 * 119.99780 * 59.82194 * 3 2 1 6 6 C 1.39941 * 119.99915 * 174.39947 * 5 3 2 7 7 C 1.39288 * 119.94449 * 145.37908 * 6 5 3 8 8 C 1.38491 * 120.42879 * 179.72521 * 7 6 5 9 9 C 1.37681 * 120.32187 * 0.02562 * 8 7 6 10 10 C 1.40742 * 119.88359 * 359.97438 * 9 8 7 11 11 C 1.41410 * 120.21041 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00398 * 214.32616 * 11 10 9 13 13 C 1.39939 * 119.99658 * 34.33529 * 11 10 9 14 14 N 1.30831 * 119.99622 * 5.46884 * 13 11 10 15 15 Si 1.86793 * 119.99889 * 185.47129 * 13 11 10 16 16 H 1.48503 * 109.47184 * 59.99741 * 15 13 11 17 17 H 1.48502 * 109.47059 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47340 * 299.99678 * 15 13 11 19 19 C 1.38243 * 119.95014 * 325.11391 * 6 5 3 20 20 C 1.53173 * 109.61969 * 120.22862 * 2 1 3 21 21 C 1.53092 * 109.16550 * 176.88805 * 20 2 1 22 22 O 1.42899 * 109.41482 * 302.38849 * 21 20 2 23 23 C 1.42908 * 114.09937 * 61.15772 * 22 21 20 24 24 C 1.53096 * 109.41132 * 298.84487 * 23 22 21 25 25 H 1.09004 * 109.47669 * 59.99444 * 1 2 3 26 26 H 1.08998 * 109.47552 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46883 * 300.00187 * 1 2 3 28 28 H 0.96999 * 119.99958 * 354.41218 * 5 3 2 29 29 H 1.08004 * 119.78855 * 359.71851 * 7 6 5 30 30 H 1.07997 * 119.83882 * 180.02562 * 8 7 6 31 31 H 1.07995 * 120.06061 * 179.97438 * 9 8 7 32 32 H 0.97004 * 119.98949 * 179.97438 * 14 13 11 33 33 H 1.08004 * 120.15505 * 0.24861 * 19 6 5 34 34 H 1.09005 * 109.51714 * 296.79245 * 20 2 1 35 35 H 1.09000 * 109.52443 * 56.97991 * 20 2 1 36 36 H 1.09001 * 109.48159 * 182.40186 * 21 20 2 37 37 H 1.08999 * 109.48733 * 62.37617 * 21 20 2 38 38 H 1.08997 * 109.48245 * 178.85874 * 23 22 21 39 39 H 1.08999 * 109.48932 * 58.82503 * 23 22 21 40 40 H 1.09000 * 109.52050 * 297.69882 * 24 23 22 41 41 H 1.08998 * 109.51888 * 177.51428 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0341 1.4202 0.0000 4 8 2.7345 1.8150 -0.9081 5 7 1.7067 2.2515 1.0090 6 6 2.2682 3.5318 1.0710 7 6 1.5177 4.5970 1.5630 8 6 2.0653 5.8671 1.6341 9 6 3.3586 6.0907 1.2183 10 6 4.1289 5.0240 0.7188 11 6 5.4578 5.2460 0.2893 12 1 5.8574 4.6848 -0.5424 13 6 6.2551 6.1927 0.9421 14 7 5.8097 6.7950 2.0147 15 14 7.9553 6.5964 0.2821 16 1 7.8373 7.1202 -1.1025 17 1 8.5915 7.6220 1.1473 18 1 8.7891 5.3675 0.2770 19 6 3.5686 3.7363 0.6489 20 6 2.0443 -0.7264 1.2466 21 6 3.5731 -0.7885 1.1972 22 8 3.9832 -1.4478 -0.0024 23 6 3.5712 -0.7877 -1.2011 24 6 2.0422 -0.7256 -1.2480 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.0819 1.9622 1.6923 29 1 0.5021 4.4316 1.8912 30 1 1.4749 6.6861 2.0176 31 1 3.7812 7.0829 1.2752 32 1 6.3627 7.4510 2.4674 33 1 4.1514 2.9108 0.2675 34 1 1.7303 -0.1850 2.1391 35 1 1.6393 -1.7380 1.2718 36 1 3.9426 -1.3417 2.0607 37 1 3.9788 0.2231 1.2130 38 1 3.9393 -1.3405 -2.0654 39 1 3.9767 0.2239 -1.2170 40 1 1.6372 -1.7373 -1.2732 41 1 1.7269 -0.1837 -2.1396 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590884494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:02 Heat of formation + Delta-G solvation = -72.957563 kcal Electronic energy + Delta-G solvation = -23583.019642 eV Core-core repulsion = 20234.011483 eV Total energy + Delta-G solvation = -3349.008159 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.84610 -38.45623 -37.04513 -34.84549 -34.45566 -32.97493 -31.03028 -29.81561 -28.70653 -27.96814 -25.29314 -23.85589 -23.63159 -22.31639 -21.02197 -20.47019 -18.93062 -17.71661 -16.55063 -15.91679 -15.90936 -15.55898 -15.21653 -14.91822 -14.65520 -14.38660 -14.19156 -13.98297 -13.12499 -12.91223 -12.67237 -12.53135 -12.33670 -12.14850 -12.08763 -11.88932 -11.65992 -11.31553 -11.14385 -11.10081 -10.94609 -10.56185 -10.48131 -10.44581 -10.09240 -9.63319 -9.52356 -9.29150 -9.04898 -8.89467 -7.39872 -6.93311 -6.62211 -4.36401 2.54237 2.84121 3.11011 3.15241 3.18386 3.31789 3.55561 3.97757 4.00721 4.44789 4.58739 4.68086 4.73537 4.98644 5.06369 5.27339 5.38483 5.46314 5.55422 5.58987 5.63559 5.67501 5.75906 5.88970 5.95468 5.97919 6.06861 6.20392 6.22404 6.33379 6.74422 6.97945 7.00831 7.06094 7.27571 7.28986 7.52973 7.69905 7.92734 8.09776 8.13077 8.24635 8.62686 8.70704 8.95014 8.97463 10.31924 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018688 B = 0.004921 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.916384 B = 5688.540535 C = 6666.681996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 C 0.514 3.486 4 O -0.514 6.514 5 N -0.666 5.666 6 C 0.145 3.855 7 C -0.251 4.251 8 C -0.097 4.097 9 C -0.157 4.157 10 C 0.121 3.879 11 C -0.465 4.465 12 H 0.076 0.924 13 C 0.074 3.926 14 N -0.811 5.811 15 Si 0.912 3.088 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.266 1.266 19 C -0.200 4.200 20 C -0.141 4.141 21 C 0.056 3.944 22 O -0.385 6.385 23 C 0.046 3.954 24 C -0.126 4.126 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.396 0.604 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.278 0.722 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.169 -12.220 -0.299 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.087 4.087 3 C 0.300 3.700 4 O -0.389 6.389 5 N -0.309 5.309 6 C 0.054 3.946 7 C -0.273 4.273 8 C -0.116 4.116 9 C -0.177 4.177 10 C 0.118 3.882 11 C -0.495 4.495 12 H 0.094 0.906 13 C -0.142 4.142 14 N -0.438 5.438 15 Si 0.737 3.263 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.221 4.221 20 C -0.179 4.179 21 C -0.021 4.021 22 O -0.304 6.304 23 C -0.030 4.030 24 C -0.164 4.164 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.231 0.769 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.465 -11.968 -0.786 14.127 hybrid contribution 0.151 0.375 0.274 0.488 sum -7.315 -11.593 -0.512 13.717 Atomic orbital electron populations 1.21836 0.92346 1.02740 1.02701 1.20907 0.97282 0.92627 0.97859 1.20422 0.80861 0.86840 0.81855 1.90697 1.36732 1.76438 1.34990 1.43481 1.46266 1.14273 1.26898 1.17461 0.92605 0.82409 1.02139 1.20100 0.98472 0.92942 1.15763 1.20501 0.95904 0.94816 1.00384 1.21373 0.92358 0.99673 1.04302 1.17502 0.92601 0.89582 0.88537 1.19486 0.96621 1.18524 1.14904 0.90588 1.25837 1.00402 0.94088 0.93858 1.69771 1.37793 1.21453 1.14752 0.86310 0.81488 0.78842 0.79677 1.18961 1.20424 1.19107 1.21044 0.93409 0.97449 1.10227 1.22265 0.97576 1.01398 0.96659 1.22583 0.93107 0.98405 0.88011 1.87870 1.77292 1.51372 1.13848 1.22870 0.93486 0.99684 0.86954 1.22012 0.97437 1.00073 0.96909 0.91793 0.91395 0.92037 0.76936 0.89257 0.88948 0.86377 0.91082 0.87766 0.90442 0.89999 0.88700 0.92658 0.89224 0.90146 0.90801 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.39 37.15 0.31 -1.03 16 2 C -0.08 -1.04 0.64 -155.48 -0.10 -1.13 16 3 C 0.51 8.78 4.87 -10.99 -0.05 8.72 16 4 O -0.51 -10.90 11.64 5.55 0.06 -10.83 16 5 N -0.67 -11.50 5.10 -9.91 -0.05 -11.55 16 6 C 0.15 3.22 6.24 -83.76 -0.52 2.70 16 7 C -0.25 -5.44 9.97 -39.10 -0.39 -5.83 16 8 C -0.10 -2.24 10.02 -39.69 -0.40 -2.64 16 9 C -0.16 -4.11 8.62 -38.84 -0.33 -4.44 16 10 C 0.12 3.30 5.50 -106.85 -0.59 2.71 16 11 C -0.46 -12.80 9.04 -37.74 -0.34 -13.14 16 12 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 13 C 0.07 1.90 5.31 -17.34 -0.09 1.81 16 14 N -0.81 -21.38 10.96 55.55 0.61 -20.77 16 15 Si 0.91 19.44 29.56 -169.99 -5.03 14.42 16 16 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 17 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 C -0.20 -5.11 8.40 -38.69 -0.32 -5.43 16 20 C -0.14 -1.56 4.87 -26.59 -0.13 -1.69 16 21 C 0.06 0.75 6.62 37.21 0.25 1.00 16 22 O -0.38 -5.74 10.77 -35.23 -0.38 -6.12 16 23 C 0.05 0.66 6.55 37.21 0.24 0.91 16 24 C -0.13 -1.57 4.56 -26.59 -0.12 -1.69 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.53 7.44 -51.92 -0.39 0.15 16 28 H 0.40 5.40 7.69 -40.82 -0.31 5.08 16 29 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 30 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.12 3.18 6.46 -52.49 -0.34 2.84 16 32 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 33 H 0.10 2.74 6.52 -52.48 -0.34 2.40 16 34 H 0.08 0.76 7.66 -51.93 -0.40 0.36 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.89 7.38 -51.93 -0.38 0.51 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.08 1.41 5.80 -51.93 -0.30 1.11 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.03 8.03 -51.93 -0.42 0.61 16 LS Contribution 327.03 15.07 4.93 4.93 Total: -1.00 -30.47 327.03 -8.26 -38.72 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.81 Total: 10.37 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -2.59 Total: -19.17 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.56 Total: -32.31 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.31 Total: -16.95 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.47 -8.26 -38.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590884494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.235 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds