Wall clock time and date at job start Tue Mar 31 2020 07:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.54680 * 2 1 4 4 O 1.21286 * 119.99786 * 239.83015 * 3 2 1 5 5 N 1.34774 * 119.99780 * 59.82194 * 3 2 1 6 6 C 1.39941 * 119.99915 * 174.39947 * 5 3 2 7 7 C 1.39288 * 119.94449 * 145.37908 * 6 5 3 8 8 C 1.38491 * 120.42879 * 179.72521 * 7 6 5 9 9 C 1.37681 * 120.32187 * 0.02562 * 8 7 6 10 10 C 1.40742 * 119.88359 * 359.97438 * 9 8 7 11 11 C 1.41410 * 120.21041 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00398 * 214.32616 * 11 10 9 13 13 C 1.39939 * 119.99658 * 34.33529 * 11 10 9 14 14 N 1.30831 * 119.99622 * 5.46884 * 13 11 10 15 15 Si 1.86793 * 119.99889 * 185.47129 * 13 11 10 16 16 H 1.48503 * 109.47184 * 59.99741 * 15 13 11 17 17 H 1.48502 * 109.47059 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47340 * 299.99678 * 15 13 11 19 19 C 1.38243 * 119.95014 * 325.11391 * 6 5 3 20 20 C 1.53173 * 109.61969 * 120.22862 * 2 1 3 21 21 C 1.53092 * 109.16550 * 176.88805 * 20 2 1 22 22 O 1.42899 * 109.41482 * 302.38849 * 21 20 2 23 23 C 1.42908 * 114.09937 * 61.15772 * 22 21 20 24 24 C 1.53096 * 109.41132 * 298.84487 * 23 22 21 25 25 H 1.09004 * 109.47669 * 59.99444 * 1 2 3 26 26 H 1.08998 * 109.47552 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46883 * 300.00187 * 1 2 3 28 28 H 0.96999 * 119.99958 * 354.41218 * 5 3 2 29 29 H 1.08004 * 119.78855 * 359.71851 * 7 6 5 30 30 H 1.07997 * 119.83882 * 180.02562 * 8 7 6 31 31 H 1.07995 * 120.06061 * 179.97438 * 9 8 7 32 32 H 0.97004 * 119.98949 * 179.97438 * 14 13 11 33 33 H 1.08004 * 120.15505 * 0.24861 * 19 6 5 34 34 H 1.09005 * 109.51714 * 296.79245 * 20 2 1 35 35 H 1.09000 * 109.52443 * 56.97991 * 20 2 1 36 36 H 1.09001 * 109.48159 * 182.40186 * 21 20 2 37 37 H 1.08999 * 109.48733 * 62.37617 * 21 20 2 38 38 H 1.08997 * 109.48245 * 178.85874 * 23 22 21 39 39 H 1.08999 * 109.48932 * 58.82503 * 23 22 21 40 40 H 1.09000 * 109.52050 * 297.69882 * 24 23 22 41 41 H 1.08998 * 109.51888 * 177.51428 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0341 1.4202 0.0000 4 8 2.7345 1.8150 -0.9081 5 7 1.7067 2.2515 1.0090 6 6 2.2682 3.5318 1.0710 7 6 1.5177 4.5970 1.5630 8 6 2.0653 5.8671 1.6341 9 6 3.3586 6.0907 1.2183 10 6 4.1289 5.0240 0.7188 11 6 5.4578 5.2460 0.2893 12 1 5.8574 4.6848 -0.5424 13 6 6.2551 6.1927 0.9421 14 7 5.8097 6.7950 2.0147 15 14 7.9553 6.5964 0.2821 16 1 7.8373 7.1202 -1.1025 17 1 8.5915 7.6220 1.1473 18 1 8.7891 5.3675 0.2770 19 6 3.5686 3.7363 0.6489 20 6 2.0443 -0.7264 1.2466 21 6 3.5731 -0.7885 1.1972 22 8 3.9832 -1.4478 -0.0024 23 6 3.5712 -0.7877 -1.2011 24 6 2.0422 -0.7256 -1.2480 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.0819 1.9622 1.6923 29 1 0.5021 4.4316 1.8912 30 1 1.4749 6.6861 2.0176 31 1 3.7812 7.0829 1.2752 32 1 6.3627 7.4510 2.4674 33 1 4.1514 2.9108 0.2675 34 1 1.7303 -0.1850 2.1391 35 1 1.6393 -1.7380 1.2718 36 1 3.9426 -1.3417 2.0607 37 1 3.9788 0.2231 1.2130 38 1 3.9393 -1.3405 -2.0654 39 1 3.9767 0.2239 -1.2170 40 1 1.6372 -1.7373 -1.2732 41 1 1.7269 -0.1837 -2.1396 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590884494.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:01 Heat of formation + Delta-G solvation = -92.293711 kcal Electronic energy + Delta-G solvation = -23583.858120 eV Core-core repulsion = 20234.011483 eV Total energy + Delta-G solvation = -3349.846638 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.11709 -39.91822 -38.67704 -36.24961 -35.91220 -34.74965 -32.09419 -31.74774 -30.13241 -29.21831 -27.26746 -25.08463 -24.65737 -23.58677 -22.85062 -22.10993 -20.33358 -19.50429 -17.89495 -17.36824 -17.11484 -17.02799 -16.77083 -16.51161 -16.16700 -15.67669 -15.49460 -15.19628 -14.82511 -14.62841 -14.05752 -13.68007 -13.59033 -13.46485 -13.20360 -13.01636 -12.95050 -12.94306 -12.87697 -12.80672 -12.27494 -12.21104 -11.97739 -11.57275 -11.52026 -11.47683 -11.17645 -10.82968 -10.64627 -10.32226 -9.34872 -8.76556 -8.55054 -6.42832 0.83502 0.96875 1.34052 1.45432 1.45906 1.77477 2.17919 2.21743 2.76474 2.89656 3.45308 3.54630 3.67541 3.73983 3.99545 4.01177 4.26074 4.43121 4.48767 4.56108 4.58997 4.63312 4.66053 4.76001 4.84622 4.93542 4.98839 5.03136 5.05024 5.06061 5.10933 5.15322 5.22254 5.29518 5.31311 5.74895 5.81784 6.03167 6.09553 6.17543 6.33591 6.61255 6.66729 6.92623 6.98058 7.30912 8.39091 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018688 B = 0.004921 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.916384 B = 5688.540535 C = 6666.681996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.075 4.075 3 C 0.508 3.492 4 O -0.561 6.561 5 N -0.656 5.656 6 C 0.153 3.847 7 C -0.239 4.239 8 C -0.095 4.095 9 C -0.183 4.183 10 C 0.088 3.912 11 C -0.509 4.509 12 H 0.059 0.941 13 C 0.035 3.965 14 N -0.837 5.837 15 Si 0.982 3.018 16 H -0.262 1.262 17 H -0.260 1.260 18 H -0.266 1.266 19 C -0.223 4.223 20 C -0.134 4.134 21 C 0.048 3.952 22 O -0.395 6.395 23 C 0.044 3.956 24 C -0.123 4.123 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.419 0.581 29 H 0.135 0.865 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.286 0.714 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.013 0.987 38 H 0.105 0.895 39 H 0.037 0.963 40 H 0.107 0.893 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.677 -13.923 0.832 17.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.079 4.079 3 C 0.297 3.703 4 O -0.439 6.439 5 N -0.302 5.302 6 C 0.060 3.940 7 C -0.259 4.259 8 C -0.114 4.114 9 C -0.203 4.203 10 C 0.085 3.915 11 C -0.540 4.540 12 H 0.077 0.923 13 C -0.177 4.177 14 N -0.464 5.464 15 Si 0.802 3.198 16 H -0.186 1.186 17 H -0.184 1.184 18 H -0.191 1.191 19 C -0.245 4.245 20 C -0.171 4.171 21 C -0.028 4.028 22 O -0.314 6.314 23 C -0.033 4.033 24 C -0.161 4.161 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.095 0.905 28 H 0.257 0.743 29 H 0.153 0.847 30 H 0.143 0.857 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.032 0.968 38 H 0.123 0.877 39 H 0.055 0.945 40 H 0.126 0.874 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.022 -13.697 0.374 16.976 hybrid contribution 0.836 0.821 -0.071 1.174 sum -9.186 -12.876 0.303 15.820 Atomic orbital electron populations 1.21877 0.89277 1.04977 1.03127 1.20977 0.99472 0.88720 0.98692 1.21480 0.79553 0.88577 0.80680 1.90698 1.38590 1.77664 1.36943 1.43395 1.46363 1.12601 1.27801 1.17535 0.91436 0.84931 1.00080 1.20558 1.00057 0.91775 1.13553 1.20880 0.94835 0.96678 0.98999 1.21304 0.93961 0.98594 1.06403 1.17830 0.93175 0.90770 0.89683 1.19638 0.97872 1.20584 1.15893 0.92293 1.26616 1.04101 0.93273 0.93734 1.69820 1.39375 1.21810 1.15430 0.85272 0.76409 0.78823 0.79252 1.18634 1.18433 1.19087 1.20968 0.95241 0.96305 1.11976 1.22301 0.95151 1.03285 0.96389 1.22735 0.95395 0.96447 0.88255 1.87849 1.77991 1.51246 1.14297 1.22843 0.95343 0.97544 0.87554 1.22027 0.95574 1.01763 0.96717 0.92599 0.88262 0.90495 0.74323 0.84719 0.85699 0.88085 0.90305 0.90200 0.88699 0.86640 0.86476 0.96827 0.87699 0.94501 0.87439 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.39 71.98 0.60 -1.42 16 2 C -0.08 -1.69 0.64 -52.81 -0.03 -1.72 16 3 C 0.51 17.25 4.87 87.66 0.43 17.68 16 4 O -0.56 -25.10 11.64 -3.05 -0.04 -25.14 16 5 N -0.66 -21.79 5.10 -303.65 -1.55 -23.34 16 6 C 0.15 6.78 6.24 38.10 0.24 7.02 16 7 C -0.24 -9.79 9.97 22.58 0.23 -9.56 16 8 C -0.10 -4.30 10.02 22.20 0.22 -4.08 16 9 C -0.18 -9.88 8.62 22.75 0.20 -9.68 16 10 C 0.09 5.11 5.50 -21.31 -0.12 4.99 16 11 C -0.51 -30.11 9.04 23.46 0.21 -29.90 16 12 H 0.06 3.51 7.85 -2.91 -0.02 3.49 16 13 C 0.04 1.91 5.31 85.25 0.45 2.37 16 14 N -0.84 -45.74 10.96 21.83 0.24 -45.50 16 15 Si 0.98 41.34 29.56 68.60 2.03 43.37 16 16 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 17 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 19 C -0.22 -12.06 8.40 22.85 0.19 -11.87 16 20 C -0.13 -2.50 4.87 30.68 0.15 -2.35 16 21 C 0.05 1.26 6.62 72.01 0.48 1.74 16 22 O -0.39 -11.61 10.77 -148.98 -1.60 -13.21 16 23 C 0.04 1.27 6.55 72.01 0.47 1.74 16 24 C -0.12 -2.84 4.56 30.69 0.14 -2.70 16 25 H 0.05 0.95 8.14 -2.38 -0.02 0.94 16 26 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.08 0.93 7.44 -2.38 -0.02 0.91 16 28 H 0.42 10.00 7.69 -92.71 -0.71 9.29 16 29 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 30 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 31 H 0.10 5.71 6.46 -2.91 -0.02 5.69 16 32 H 0.29 14.16 8.30 -92.71 -0.77 13.39 16 33 H 0.08 4.61 6.52 -2.91 -0.02 4.59 16 34 H 0.09 1.47 7.66 -2.38 -0.02 1.45 16 35 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.01 0.46 7.38 -2.39 -0.02 0.44 16 38 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.04 1.40 5.80 -2.39 -0.01 1.39 16 40 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 1.79 8.03 -2.39 -0.02 1.77 16 Total: -1.00 -73.06 327.03 3.26 -69.80 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: 0.33 Total: 31.76 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 3.86 Total: -37.74 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -1.31 Total: -68.83 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -1.64 Total: -38.35 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -73.06 3.26 -69.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590884494.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.495 kcal (2) G-P(sol) polarization free energy of solvation -73.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds