Wall clock time and date at job start Tue Mar 31 2020 06:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38247 * 119.99792 * 2 1 4 4 C 1.38214 * 119.99839 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.99953 * 359.97438 * 4 3 2 6 6 C 1.38211 * 119.99778 * 359.80871 * 5 4 3 7 7 C 1.38213 * 119.99547 * 180.02562 * 2 1 3 8 8 C 1.50692 * 120.00393 * 359.97438 * 7 2 1 9 9 C 1.50706 * 109.46855 * 85.00360 * 8 7 2 10 10 O 1.21281 * 120.00160 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99667 * 180.02562 * 9 8 7 12 12 C 1.47425 * 125.65136 * 359.95409 * 11 9 8 13 13 C 1.54915 * 104.83334 * 204.16738 * 12 11 9 14 14 C 1.55165 * 101.57980 * 322.99105 * 13 12 11 15 15 O 1.42893 * 110.71912 * 277.13741 * 14 13 12 16 16 C 1.50700 * 110.71840 * 153.86731 * 14 13 12 17 17 H 1.08005 * 119.99597 * 246.47621 * 16 14 13 18 18 C 1.37868 * 120.00222 * 66.47683 * 16 14 13 19 19 N 1.31519 * 120.00187 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 120.00056 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47657 * 89.99989 * 20 18 16 22 22 H 1.48502 * 109.46764 * 209.99866 * 20 18 16 23 23 H 1.48501 * 109.47053 * 329.99583 * 20 18 16 24 24 C 1.47022 * 125.64528 * 180.02562 * 11 9 8 25 25 H 1.08998 * 109.46784 * 269.97551 * 1 2 3 26 26 H 1.08998 * 109.47165 * 29.97483 * 1 2 3 27 27 H 1.08999 * 109.47333 * 149.97680 * 1 2 3 28 28 H 1.07996 * 120.00613 * 359.97438 * 3 2 1 29 29 H 1.08006 * 120.00378 * 179.97438 * 4 3 2 30 30 H 1.08000 * 119.99902 * 179.97438 * 5 4 3 31 31 H 1.07999 * 119.99789 * 180.23301 * 6 5 4 32 32 H 1.08997 * 109.47276 * 325.00843 * 8 7 2 33 33 H 1.09002 * 109.47562 * 205.00158 * 8 7 2 34 34 H 1.08997 * 110.36855 * 323.00479 * 12 11 9 35 35 H 1.08999 * 110.36490 * 85.21794 * 12 11 9 36 36 H 1.08995 * 111.00392 * 204.91661 * 13 12 11 37 37 H 1.09001 * 111.00387 * 81.05917 * 13 12 11 38 38 H 0.96699 * 114.00392 * 293.52799 * 15 14 13 39 39 H 0.96995 * 120.00067 * 179.97438 * 19 18 16 40 40 H 1.08997 * 109.88723 * 59.48678 * 24 11 9 41 41 H 1.08998 * 109.88661 * 298.31659 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1970 0.0040 7 6 2.1981 -1.1970 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 6 1.0857 -2.8748 -1.4160 10 8 1.4095 -2.1517 -2.3342 11 7 0.4040 -4.0113 -1.6612 12 6 -0.0501 -4.9774 -0.6444 13 6 -0.1920 -6.3184 -1.4069 14 6 -0.7336 -5.8402 -2.7800 15 8 -2.1488 -5.6500 -2.7269 16 6 -0.3658 -6.8166 -3.8675 17 1 0.3218 -6.5229 -4.6469 18 6 -0.9071 -8.0845 -3.8675 19 7 -1.7441 -8.4423 -2.9182 20 14 -0.4507 -9.2949 -5.2151 21 1 0.7428 -10.0737 -4.7978 22 1 -1.5869 -10.2207 -5.4545 23 1 -0.1454 -8.5527 -6.4646 24 6 -0.0085 -4.4938 -2.9874 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6584 2.1326 -0.0004 29 1 4.1205 2.1326 -0.0010 30 1 5.3517 -0.0001 -0.0014 31 1 4.1206 -2.1323 0.0078 32 1 0.5341 -2.3959 0.5891 33 1 2.0696 -3.2826 0.4334 34 1 0.6910 -5.0690 0.1496 35 1 -1.0111 -4.6701 -0.2318 36 1 -0.9073 -6.9754 -0.9121 37 1 0.7750 -6.8091 -1.5177 38 1 -2.6508 -6.4663 -2.5977 39 1 -2.1253 -9.3342 -2.9185 40 1 0.8682 -4.6381 -3.6187 41 1 -0.6860 -3.7755 -3.4490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592835466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:25 Heat of formation + Delta-G solvation = -67.704291 kcal Electronic energy + Delta-G solvation = -23004.588487 eV Core-core repulsion = 19655.808126 eV Total energy + Delta-G solvation = -3348.780360 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.05072 -38.88528 -37.17062 -34.33239 -33.25812 -32.18513 -32.14500 -29.89206 -28.61140 -27.68217 -26.58326 -24.89817 -22.53486 -21.98025 -20.92414 -19.68392 -18.67747 -17.32108 -16.59328 -16.36053 -15.94281 -15.26704 -15.00527 -14.79100 -14.58370 -14.21067 -13.69835 -13.48889 -13.17055 -13.04933 -12.82739 -12.46306 -12.17613 -12.04303 -12.00141 -11.80606 -11.50619 -11.40836 -11.38174 -10.95280 -10.91418 -10.88236 -10.63556 -10.52021 -10.14957 -9.50333 -9.36939 -8.74841 -8.69361 -8.50230 -8.24205 -8.01498 -6.32738 -4.39883 1.37998 1.44620 3.06814 3.17887 3.25634 3.30003 3.49011 3.88997 4.24519 4.71206 4.81360 4.93129 4.98372 5.02921 5.07104 5.27019 5.33632 5.49614 5.55925 5.58223 5.64097 5.72826 5.76076 5.85897 5.89922 5.98921 6.07174 6.20669 6.22416 6.44395 6.50125 6.52876 6.67712 6.70251 6.88032 6.94919 7.05823 7.26920 7.30924 7.70645 7.97407 8.11075 8.61153 8.65735 9.28667 9.42359 10.75088 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033818 B = 0.003517 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.773411 B = 7959.539571 C = 8228.988182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.068 4.068 3 C -0.122 4.122 4 C -0.121 4.121 5 C -0.127 4.127 6 C -0.104 4.104 7 C -0.060 4.060 8 C -0.101 4.101 9 C 0.523 3.477 10 O -0.545 6.545 11 N -0.610 5.610 12 C 0.095 3.905 13 C -0.137 4.137 14 C 0.248 3.752 15 O -0.587 6.587 16 C -0.535 4.535 17 H 0.065 0.935 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.123 3.877 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.386 0.614 39 H 0.269 0.731 40 H 0.070 0.930 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.967 11.266 10.075 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.139 4.139 5 C -0.145 4.145 6 C -0.122 4.122 7 C -0.060 4.060 8 C -0.140 4.140 9 C 0.311 3.689 10 O -0.423 6.423 11 N -0.343 5.343 12 C -0.028 4.028 13 C -0.176 4.176 14 C 0.208 3.792 15 O -0.397 6.397 16 C -0.573 4.573 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.538 5.538 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 C 0.001 3.999 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.238 0.762 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.225 12.183 9.564 16.692 hybrid contribution 0.105 -1.441 -0.561 1.550 sum 6.330 10.742 9.004 15.379 Atomic orbital electron populations 1.20835 0.91386 1.03291 1.01898 1.19715 0.95971 0.92579 0.98567 1.20951 0.94265 0.97223 1.01555 1.21067 0.94288 0.97866 1.00726 1.21037 0.99607 0.92497 1.01371 1.20984 0.93430 0.98219 0.99604 1.19208 0.93461 0.93329 1.00004 1.20681 1.01767 0.95931 0.95665 1.19999 0.78146 0.80089 0.90675 1.90690 1.54490 1.50763 1.46371 1.48669 1.54321 1.21307 1.10029 1.22500 0.98330 0.90812 0.91132 1.23320 1.02148 0.93567 0.98561 1.19429 0.79467 0.88722 0.91623 1.86095 1.19085 1.38464 1.96053 1.21557 1.27785 0.97034 1.10948 0.91709 1.24988 0.94192 0.98001 0.95852 1.69571 1.30662 1.20823 1.32753 0.86395 0.78089 0.80453 0.81943 1.20459 1.20979 1.19660 1.22067 0.98316 0.96471 0.83024 0.91196 0.91489 0.91348 0.86285 0.86383 0.86295 0.86230 0.88173 0.88330 0.92177 0.91861 0.89634 0.91462 0.76192 0.92083 0.91131 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.22 36.01 0.33 -1.09 16 2 C -0.07 -0.92 5.88 -104.62 -0.62 -1.54 16 3 C -0.12 -1.48 9.70 -39.59 -0.38 -1.86 16 4 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 5 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 6 C -0.10 -1.38 9.68 -39.58 -0.38 -1.76 16 7 C -0.06 -0.85 4.37 -104.63 -0.46 -1.30 16 8 C -0.10 -1.40 4.16 -29.04 -0.12 -1.52 16 9 C 0.52 9.69 7.07 -10.98 -0.08 9.61 16 10 O -0.54 -12.01 16.36 5.56 0.09 -11.92 16 11 N -0.61 -11.87 3.33 -170.52 -0.57 -12.44 16 12 C 0.09 1.65 6.68 -2.53 -0.02 1.64 16 13 C -0.14 -2.88 5.67 -24.57 -0.14 -3.02 16 14 C 0.25 5.91 0.86 -89.93 -0.08 5.84 16 15 O -0.59 -14.65 13.09 -35.23 -0.46 -15.11 16 16 C -0.53 -13.87 8.21 -34.44 -0.28 -14.16 16 17 H 0.06 1.69 7.53 -52.48 -0.40 1.30 16 18 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 19 N -0.90 -22.72 10.70 55.43 0.59 -22.13 16 20 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C 0.12 2.77 6.22 -3.06 -0.02 2.75 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 27 H 0.07 0.95 6.16 -51.93 -0.32 0.63 16 28 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 30 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.10 1.21 6.99 -51.93 -0.36 0.85 16 33 H 0.10 1.17 7.75 -51.93 -0.40 0.77 16 34 H 0.06 0.86 7.48 -51.93 -0.39 0.47 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.86 7.77 -51.93 -0.40 1.45 16 37 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 38 H 0.39 9.71 6.99 45.56 0.32 10.03 16 39 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 40 H 0.07 1.63 7.63 -51.93 -0.40 1.24 16 41 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 LS Contribution 336.76 15.07 5.07 5.07 Total: -1.00 -29.23 336.76 -8.70 -37.93 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.28 Total: 11.89 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -3.13 Total: -8.34 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.03 Total: -34.57 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.37 Total: -27.03 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.23 -8.70 -37.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592835466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.771 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds