Wall clock time and date at job start Tue Mar 31 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38247 * 119.99792 * 2 1 4 4 C 1.38214 * 119.99839 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.99953 * 359.97438 * 4 3 2 6 6 C 1.38211 * 119.99778 * 359.80871 * 5 4 3 7 7 C 1.38213 * 119.99547 * 180.02562 * 2 1 3 8 8 C 1.50692 * 120.00393 * 359.97438 * 7 2 1 9 9 C 1.50706 * 109.46855 * 85.00360 * 8 7 2 10 10 O 1.21281 * 120.00160 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99667 * 180.02562 * 9 8 7 12 12 C 1.47425 * 125.65136 * 359.95409 * 11 9 8 13 13 C 1.54915 * 104.83334 * 204.16738 * 12 11 9 14 14 C 1.55165 * 101.57980 * 322.99105 * 13 12 11 15 15 O 1.42893 * 110.71912 * 277.13741 * 14 13 12 16 16 C 1.50700 * 110.71840 * 153.86731 * 14 13 12 17 17 H 1.08005 * 119.99597 * 246.47621 * 16 14 13 18 18 C 1.37868 * 120.00222 * 66.47683 * 16 14 13 19 19 N 1.31519 * 120.00187 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 120.00056 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47657 * 89.99989 * 20 18 16 22 22 H 1.48502 * 109.46764 * 209.99866 * 20 18 16 23 23 H 1.48501 * 109.47053 * 329.99583 * 20 18 16 24 24 C 1.47022 * 125.64528 * 180.02562 * 11 9 8 25 25 H 1.08998 * 109.46784 * 269.97551 * 1 2 3 26 26 H 1.08998 * 109.47165 * 29.97483 * 1 2 3 27 27 H 1.08999 * 109.47333 * 149.97680 * 1 2 3 28 28 H 1.07996 * 120.00613 * 359.97438 * 3 2 1 29 29 H 1.08006 * 120.00378 * 179.97438 * 4 3 2 30 30 H 1.08000 * 119.99902 * 179.97438 * 5 4 3 31 31 H 1.07999 * 119.99789 * 180.23301 * 6 5 4 32 32 H 1.08997 * 109.47276 * 325.00843 * 8 7 2 33 33 H 1.09002 * 109.47562 * 205.00158 * 8 7 2 34 34 H 1.08997 * 110.36855 * 323.00479 * 12 11 9 35 35 H 1.08999 * 110.36490 * 85.21794 * 12 11 9 36 36 H 1.08995 * 111.00392 * 204.91661 * 13 12 11 37 37 H 1.09001 * 111.00387 * 81.05917 * 13 12 11 38 38 H 0.96699 * 114.00392 * 293.52799 * 15 14 13 39 39 H 0.96995 * 120.00067 * 179.97438 * 19 18 16 40 40 H 1.08997 * 109.88723 * 59.48678 * 24 11 9 41 41 H 1.08998 * 109.88661 * 298.31659 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1970 0.0040 7 6 2.1981 -1.1970 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 6 1.0857 -2.8748 -1.4160 10 8 1.4095 -2.1517 -2.3342 11 7 0.4040 -4.0113 -1.6612 12 6 -0.0501 -4.9774 -0.6444 13 6 -0.1920 -6.3184 -1.4069 14 6 -0.7336 -5.8402 -2.7800 15 8 -2.1488 -5.6500 -2.7269 16 6 -0.3658 -6.8166 -3.8675 17 1 0.3218 -6.5229 -4.6469 18 6 -0.9071 -8.0845 -3.8675 19 7 -1.7441 -8.4423 -2.9182 20 14 -0.4507 -9.2949 -5.2151 21 1 0.7428 -10.0737 -4.7978 22 1 -1.5869 -10.2207 -5.4545 23 1 -0.1454 -8.5527 -6.4646 24 6 -0.0085 -4.4938 -2.9874 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6584 2.1326 -0.0004 29 1 4.1205 2.1326 -0.0010 30 1 5.3517 -0.0001 -0.0014 31 1 4.1206 -2.1323 0.0078 32 1 0.5341 -2.3959 0.5891 33 1 2.0696 -3.2826 0.4334 34 1 0.6910 -5.0690 0.1496 35 1 -1.0111 -4.6701 -0.2318 36 1 -0.9073 -6.9754 -0.9121 37 1 0.7750 -6.8091 -1.5177 38 1 -2.6508 -6.4663 -2.5977 39 1 -2.1253 -9.3342 -2.9185 40 1 0.8682 -4.6381 -3.6187 41 1 -0.6860 -3.7755 -3.4490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592835466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:24 Heat of formation + Delta-G solvation = -85.456772 kcal Electronic energy + Delta-G solvation = -23005.358292 eV Core-core repulsion = 19655.808126 eV Total energy + Delta-G solvation = -3349.550166 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.34742 -40.13487 -38.80254 -36.10550 -34.25767 -34.15700 -33.12817 -31.52634 -30.18733 -28.93115 -27.64808 -26.61172 -24.03533 -22.99812 -22.03354 -21.37429 -20.13094 -19.21404 -18.09629 -17.35368 -17.18427 -16.94193 -16.53409 -16.05455 -15.99325 -15.70333 -15.19436 -14.81163 -14.49574 -14.06372 -13.92741 -13.84547 -13.77958 -13.37843 -13.24289 -13.19884 -13.13762 -12.87552 -12.82956 -12.65071 -12.43715 -12.29322 -12.00422 -11.83631 -11.81009 -11.29596 -10.96002 -10.63867 -10.14289 -9.67729 -9.61746 -9.44881 -8.26806 -6.40828 0.43273 0.52800 1.40566 1.43995 1.52872 1.63014 2.06365 2.39050 2.88857 2.98680 3.63268 3.74854 3.90408 3.93578 4.01386 4.09279 4.18982 4.31089 4.33036 4.42888 4.45638 4.52830 4.59148 4.68559 4.71638 4.78496 4.84457 4.91462 4.94354 5.17812 5.18262 5.25980 5.30824 5.45862 5.52121 5.59627 5.63612 5.75205 5.75650 6.05061 6.16647 6.58525 6.65764 7.16299 7.30304 7.44265 8.79525 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033818 B = 0.003517 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.773411 B = 7959.539571 C = 8228.988182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C -0.133 4.133 4 C -0.123 4.123 5 C -0.135 4.135 6 C -0.120 4.120 7 C -0.085 4.085 8 C -0.089 4.089 9 C 0.522 3.478 10 O -0.586 6.586 11 N -0.613 5.613 12 C 0.103 3.897 13 C -0.129 4.129 14 C 0.236 3.764 15 O -0.595 6.595 16 C -0.565 4.565 17 H 0.050 0.950 18 C 0.038 3.962 19 N -0.906 5.906 20 Si 0.959 3.041 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.278 1.278 24 C 0.130 3.870 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.383 0.617 39 H 0.273 0.727 40 H 0.055 0.945 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.848 11.705 11.750 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.150 4.150 4 C -0.141 4.141 5 C -0.153 4.153 6 C -0.138 4.138 7 C -0.086 4.086 8 C -0.128 4.128 9 C 0.312 3.688 10 O -0.467 6.467 11 N -0.346 5.346 12 C -0.018 4.018 13 C -0.167 4.167 14 C 0.196 3.804 15 O -0.405 6.405 16 C -0.603 4.603 17 H 0.068 0.932 18 C -0.163 4.163 19 N -0.546 5.546 20 Si 0.785 3.215 21 H -0.198 1.198 22 H -0.203 1.203 23 H -0.204 1.204 24 C 0.006 3.994 25 H 0.110 0.890 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.156 0.844 29 H 0.163 0.837 30 H 0.160 0.840 31 H 0.147 0.853 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.234 0.766 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.104 12.620 11.271 18.351 hybrid contribution -0.157 -1.513 -1.119 1.889 sum 6.947 11.107 10.152 16.573 Atomic orbital electron populations 1.20829 0.90843 1.02403 1.03055 1.20007 0.96700 0.93109 0.98952 1.21278 0.94939 0.97629 1.01193 1.21461 0.94288 0.98972 0.99397 1.21392 1.00948 0.92257 1.00694 1.21254 0.93412 0.99341 0.99804 1.19373 0.94084 0.93555 1.01543 1.20685 1.03171 0.96775 0.92152 1.20899 0.76674 0.78849 0.92365 1.90662 1.55895 1.51868 1.48240 1.48740 1.54668 1.22202 1.09004 1.22548 1.00346 0.87995 0.90932 1.23105 1.01120 0.95309 0.97210 1.19572 0.78919 0.89020 0.92931 1.86080 1.19887 1.38299 1.96206 1.21761 1.28485 0.98287 1.11764 0.93152 1.25577 0.94087 0.99062 0.97617 1.69620 1.30488 1.21212 1.33275 0.85538 0.78102 0.78511 0.79342 1.19782 1.20259 1.20358 1.21754 0.97133 0.95631 0.84843 0.88969 0.90930 0.93618 0.84351 0.83697 0.84026 0.85331 0.86114 0.85803 0.87825 0.90805 0.90411 0.92227 0.76581 0.91705 0.92673 0.94257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.63 9.22 71.24 0.66 -1.97 16 2 C -0.09 -2.25 5.88 -19.87 -0.12 -2.37 16 3 C -0.13 -2.95 9.70 22.27 0.22 -2.74 16 4 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 5 C -0.14 -2.90 10.05 22.27 0.22 -2.68 16 6 C -0.12 -2.97 9.68 22.27 0.22 -2.75 16 7 C -0.09 -2.29 4.37 -19.87 -0.09 -2.37 16 8 C -0.09 -2.27 4.16 29.10 0.12 -2.15 16 9 C 0.52 19.01 7.07 87.66 0.62 19.63 16 10 O -0.59 -26.20 16.36 -3.03 -0.05 -26.25 16 11 N -0.61 -23.58 3.33 -811.78 -2.70 -26.28 16 12 C 0.10 3.40 6.68 86.86 0.58 3.98 16 13 C -0.13 -5.33 5.67 31.99 0.18 -5.15 16 14 C 0.24 11.44 0.86 -10.35 -0.01 11.43 16 15 O -0.59 -30.22 13.09 -148.98 -1.95 -32.17 16 16 C -0.56 -29.96 8.21 25.60 0.21 -29.75 16 17 H 0.05 2.73 7.53 -2.91 -0.02 2.71 16 18 C 0.04 1.93 5.28 84.65 0.45 2.37 16 19 N -0.91 -45.70 10.70 21.44 0.23 -45.47 16 20 Si 0.96 41.16 29.54 68.60 2.03 43.19 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 22 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 C 0.13 6.02 6.22 86.73 0.54 6.56 16 25 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.07 1.52 8.09 -2.39 -0.02 1.51 16 27 H 0.04 1.24 6.16 -2.39 -0.01 1.23 16 28 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 29 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 30 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.12 2.59 6.99 -2.39 -0.02 2.57 16 33 H 0.12 2.53 7.75 -2.39 -0.02 2.51 16 34 H 0.10 2.55 7.48 -2.39 -0.02 2.53 16 35 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.08 3.33 7.77 -2.39 -0.02 3.31 16 37 H 0.06 2.53 8.04 -2.39 -0.02 2.51 16 38 H 0.38 19.56 6.99 -74.06 -0.52 19.04 16 39 H 0.27 13.07 8.31 -92.71 -0.77 12.30 16 40 H 0.05 2.68 7.63 -2.39 -0.02 2.66 16 41 H 0.04 1.94 8.07 -2.39 -0.02 1.92 16 Total: -1.00 -64.11 336.76 2.09 -62.02 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: 0.52 Total: 35.21 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 4.02 Total: -10.24 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -2.47 Total: -71.75 kcal Atomic # 8 Polarization: -56.42 SS G_CDS: -2.00 Total: -58.42 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -64.11 2.09 -62.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592835466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.441 kcal (2) G-P(sol) polarization free energy of solvation -64.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds