Wall clock time and date at job start Tue Mar 31 2020 06:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38232 * 120.00053 * 2 1 4 4 C 1.38234 * 120.00236 * 180.02562 * 3 2 1 5 5 C 1.38238 * 120.00021 * 359.94911 * 4 3 2 6 6 C 1.50703 * 120.00415 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.46828 * 90.00398 * 6 5 4 8 8 O 1.21282 * 120.00475 * 359.97438 * 7 6 5 9 9 N 1.34785 * 119.99918 * 180.02562 * 7 6 5 10 10 C 1.47423 * 125.64558 * 359.97011 * 9 7 6 11 11 C 1.54913 * 104.83089 * 155.90580 * 10 9 7 12 12 C 1.55160 * 101.57624 * 37.01185 * 11 10 9 13 13 O 1.42897 * 110.72162 * 83.04075 * 12 11 10 14 14 C 1.50702 * 110.71656 * 206.13323 * 12 11 10 15 15 H 1.08002 * 120.00299 * 118.55159 * 14 12 11 16 16 C 1.37884 * 119.99942 * 298.26718 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.47020 * 125.64951 * 180.02562 * 9 7 6 23 23 C 1.38241 * 119.99802 * 0.28201 * 5 4 3 24 24 C 1.38237 * 119.99833 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47338 * 90.00085 * 1 2 3 26 26 H 1.09001 * 109.47498 * 210.00177 * 1 2 3 27 27 H 1.09003 * 109.47023 * 330.00306 * 1 2 3 28 28 H 1.08006 * 120.00390 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.00898 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.46824 * 329.99946 * 6 5 4 31 31 H 1.08997 * 109.47179 * 210.00384 * 6 5 4 32 32 H 1.09003 * 110.36676 * 37.07285 * 10 9 7 33 33 H 1.08993 * 110.46098 * 274.79340 * 10 9 7 34 34 H 1.08989 * 111.00550 * 278.93903 * 11 10 9 35 35 H 1.08995 * 111.00094 * 155.08083 * 11 10 9 36 36 H 0.96698 * 114.00670 * 63.83578 * 13 12 11 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.88085 * 61.60181 * 22 9 7 39 39 H 1.09002 * 109.87937 * 300.44137 * 22 9 7 40 40 H 1.07998 * 120.00095 * 179.72671 * 23 5 4 41 41 H 1.07998 * 120.00345 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2717 0.0000 0.0000 6 6 5.7787 0.0000 0.0000 7 6 6.2809 0.0005 1.4208 8 8 5.4928 0.0013 2.3426 9 7 7.6061 0.0010 1.6671 10 6 8.6697 0.0006 0.6463 11 6 9.9022 0.6128 1.3576 12 6 9.7587 0.0282 2.7876 13 8 10.3049 -1.2907 2.8519 14 6 10.4206 0.9272 3.8000 15 1 9.8341 1.3786 4.5866 16 6 11.7761 1.1688 3.7255 17 7 12.4902 0.6191 2.7677 18 14 12.5978 2.2769 4.9848 19 1 13.0585 1.4607 6.1367 20 1 13.7625 2.9556 4.3619 21 1 11.6259 3.2954 5.4572 22 6 8.2302 0.0010 2.9983 23 6 3.5805 -1.1972 -0.0048 24 6 2.1981 -1.1972 -0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6581 2.1325 -0.0004 29 1 4.1206 2.1324 -0.0010 30 1 6.1420 0.8897 -0.5142 31 1 6.1420 -0.8902 -0.5135 32 1 8.3787 0.6159 -0.2051 33 1 8.8858 -1.0172 0.3217 34 1 9.8440 1.7010 1.3727 35 1 10.8286 0.2791 0.8903 36 1 11.2568 -1.3307 2.6868 37 1 13.4438 0.7893 2.7150 38 1 7.9465 -0.9009 3.5407 39 1 7.9169 0.8845 3.5545 40 1 4.1205 -2.1325 -0.0089 41 1 1.6581 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592835516.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:26 Heat of formation + Delta-G solvation = -87.475304 kcal Electronic energy + Delta-G solvation = -22581.464483 eV Core-core repulsion = 19231.826787 eV Total energy + Delta-G solvation = -3349.637696 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.24863 -40.11705 -38.85678 -36.09276 -34.70144 -34.21020 -31.79447 -31.77305 -30.57495 -29.81318 -27.28891 -25.89162 -23.88346 -23.61340 -22.00579 -21.41641 -20.18884 -19.17320 -18.08479 -17.29191 -17.00456 -16.89648 -16.38238 -16.06317 -16.01803 -15.81427 -15.21040 -14.80550 -14.51200 -14.28291 -14.01034 -13.87818 -13.65411 -13.41424 -13.24179 -13.19811 -13.10843 -12.70967 -12.68310 -12.68174 -12.41951 -12.27826 -12.01686 -11.95256 -11.79975 -11.26971 -10.94261 -10.63766 -10.14842 -9.78995 -9.61703 -9.37981 -8.25657 -6.40085 0.39972 0.53838 1.40581 1.43905 1.52344 1.63370 2.06361 2.39185 2.87507 2.99598 3.64271 3.75645 3.90241 3.94114 4.01637 4.10777 4.16280 4.26742 4.31888 4.44631 4.53450 4.58531 4.63585 4.65144 4.69896 4.86106 4.87304 4.92102 4.99552 5.18054 5.21809 5.25149 5.31426 5.47299 5.51868 5.54479 5.70148 5.71946 5.76057 6.06975 6.15705 6.59375 6.66256 7.16227 7.30284 7.39887 8.80062 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.037547 B = 0.003138 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.559898 B = 8921.900594 C = 9146.942941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C -0.131 4.131 4 C -0.117 4.117 5 C -0.087 4.087 6 C -0.086 4.086 7 C 0.519 3.481 8 O -0.589 6.589 9 N -0.613 5.613 10 C 0.103 3.897 11 C -0.126 4.126 12 C 0.234 3.766 13 O -0.593 6.593 14 C -0.564 4.564 15 H 0.048 0.952 16 C 0.038 3.962 17 N -0.904 5.904 18 Si 0.958 3.042 19 H -0.278 1.278 20 H -0.275 1.275 21 H -0.276 1.276 22 C 0.130 3.870 23 C -0.118 4.118 24 C -0.131 4.131 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.139 0.861 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.380 0.620 37 H 0.272 0.728 38 H 0.039 0.961 39 H 0.055 0.945 40 H 0.126 0.874 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.111 -0.302 -11.670 19.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.149 4.149 4 C -0.136 4.136 5 C -0.087 4.087 6 C -0.125 4.125 7 C 0.310 3.690 8 O -0.470 6.470 9 N -0.346 5.346 10 C -0.019 4.019 11 C -0.164 4.164 12 C 0.194 3.806 13 O -0.402 6.402 14 C -0.602 4.602 15 H 0.067 0.933 16 C -0.163 4.163 17 N -0.543 5.543 18 Si 0.784 3.216 19 H -0.204 1.204 20 H -0.200 1.200 21 H -0.201 1.201 22 C 0.007 3.993 23 C -0.136 4.136 24 C -0.149 4.149 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.157 0.843 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.230 0.770 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.144 0.856 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.043 -0.468 -11.162 19.550 hybrid contribution 1.524 0.630 1.039 1.949 sum -14.519 0.163 -10.122 17.700 Atomic orbital electron populations 1.20817 0.89219 1.03440 1.03205 1.20301 0.97650 0.92977 0.98982 1.21269 0.93875 0.98626 1.01125 1.21218 0.95056 0.97653 0.99624 1.19479 0.94036 0.94143 1.01051 1.20671 0.92749 1.07305 0.91809 1.21000 0.79907 0.75463 0.92646 1.90661 1.55466 1.52533 1.48315 1.48746 1.05554 1.71758 1.08512 1.22568 0.86594 1.01694 0.91047 1.23071 0.96866 0.99470 0.97032 1.19592 0.87159 0.80796 0.93017 1.86105 1.28458 1.30725 1.94932 1.21724 0.94473 1.30009 1.14028 0.93330 1.25569 0.97366 0.96423 0.96978 1.69741 1.07843 1.44403 1.32277 0.85562 0.77993 0.78883 0.79192 1.20416 1.20029 1.20062 1.21740 0.93472 0.99358 0.84780 1.21219 0.95066 0.97642 0.99679 1.21268 0.93861 0.98626 1.01127 0.89889 0.90921 0.90927 0.84325 0.85563 0.85670 0.85842 0.87767 0.90765 0.92439 0.90131 0.76975 0.91829 0.94259 0.92653 0.85616 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.23 0.71 -0.85 16 2 C -0.10 -2.10 5.88 -19.87 -0.12 -2.21 16 3 C -0.13 -2.94 9.70 22.27 0.22 -2.72 16 4 C -0.12 -2.97 9.70 22.27 0.22 -2.76 16 5 C -0.09 -2.31 4.37 -19.86 -0.09 -2.40 16 6 C -0.09 -2.17 4.84 29.10 0.14 -2.03 16 7 C 0.52 18.95 7.84 87.65 0.69 19.64 16 8 O -0.59 -26.48 16.36 -3.04 -0.05 -26.53 16 9 N -0.61 -23.60 3.33 -811.80 -2.70 -26.30 16 10 C 0.10 3.37 6.68 86.86 0.58 3.95 16 11 C -0.13 -5.23 5.48 31.99 0.18 -5.05 16 12 C 0.23 11.37 0.85 -10.35 -0.01 11.36 16 13 O -0.59 -29.91 13.09 -148.98 -1.95 -31.86 16 14 C -0.56 -29.96 8.21 25.60 0.21 -29.75 16 15 H 0.05 2.65 7.57 -2.91 -0.02 2.63 16 16 C 0.04 1.95 5.27 84.66 0.45 2.40 16 17 N -0.90 -45.48 10.66 21.45 0.23 -45.26 16 18 Si 0.96 41.26 29.54 68.60 2.03 43.28 16 19 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 22 C 0.13 6.04 6.22 86.73 0.54 6.58 16 23 C -0.12 -2.99 9.70 22.27 0.22 -2.77 16 24 C -0.13 -2.93 9.70 22.27 0.22 -2.72 16 25 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 27 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 28 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 29 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 30 H 0.13 2.50 7.79 -2.39 -0.02 2.48 16 31 H 0.12 2.51 8.08 -2.39 -0.02 2.49 16 32 H 0.10 2.56 7.48 -2.39 -0.02 2.54 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.06 2.47 8.04 -2.39 -0.02 2.45 16 35 H 0.08 3.47 7.55 -2.39 -0.02 3.45 16 36 H 0.38 19.11 7.41 -74.06 -0.55 18.56 16 37 H 0.27 13.01 8.31 -92.70 -0.77 12.24 16 38 H 0.04 1.94 8.07 -2.39 -0.02 1.92 16 39 H 0.06 2.70 7.66 -2.39 -0.02 2.68 16 40 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 41 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -64.38 341.40 2.18 -62.20 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: 0.48 Total: 33.79 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 4.14 Total: -9.33 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -2.47 Total: -71.55 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: -2.00 Total: -58.39 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Total: -64.38 2.18 -62.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592835516.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.271 kcal (2) G-P(sol) polarization free energy of solvation -64.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds