Wall clock time and date at job start Tue Mar 31 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 119.99944 * 2 1 4 4 C 1.38237 * 119.99768 * 179.78788 * 3 2 1 5 5 C 1.38237 * 119.99859 * 0.46579 * 4 3 2 6 6 C 1.50703 * 119.99799 * 179.78787 * 5 4 3 7 7 C 1.50695 * 109.47027 * 269.97645 * 6 5 4 8 8 O 1.21274 * 120.00348 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99544 * 180.02562 * 7 6 5 10 10 C 1.47422 * 125.64801 * 0.02562 * 9 7 6 11 11 C 1.54911 * 104.83085 * 204.09256 * 10 9 7 12 12 C 1.55161 * 101.58228 * 322.99254 * 11 10 9 13 13 O 1.42903 * 110.71949 * 277.14027 * 12 11 10 14 14 C 1.50698 * 110.72386 * 153.86666 * 12 11 10 15 15 H 1.08004 * 119.99819 * 241.45903 * 14 12 11 16 16 C 1.37879 * 120.00050 * 61.44986 * 14 12 11 17 17 N 1.31510 * 119.99758 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99877 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47288 * 90.00198 * 18 16 14 20 20 H 1.48506 * 109.46905 * 210.00162 * 18 16 14 21 21 H 1.48496 * 109.47147 * 329.99977 * 18 16 14 22 22 C 1.47020 * 125.64332 * 179.71880 * 9 7 6 23 23 C 1.38233 * 120.00166 * 359.76673 * 5 4 3 24 24 C 1.38232 * 119.99928 * 0.02562 * 23 5 4 25 25 H 1.09002 * 109.47152 * 269.72611 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.72711 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.72692 * 1 2 3 28 28 H 1.07998 * 120.00100 * 359.97438 * 3 2 1 29 29 H 1.07995 * 119.99857 * 180.24850 * 4 3 2 30 30 H 1.08999 * 109.46788 * 29.97756 * 6 5 4 31 31 H 1.09000 * 109.46518 * 149.97462 * 6 5 4 32 32 H 1.08996 * 110.37206 * 322.92911 * 10 9 7 33 33 H 1.09007 * 110.36452 * 85.14809 * 10 9 7 34 34 H 1.09001 * 111.00727 * 81.06368 * 11 10 9 35 35 H 1.09000 * 111.00399 * 204.92128 * 11 10 9 36 36 H 0.96702 * 113.99859 * 298.54051 * 13 12 11 37 37 H 0.97003 * 119.99780 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.88325 * 298.39045 * 22 9 7 39 39 H 1.08994 * 109.88673 * 59.56040 * 22 9 7 40 40 H 1.07999 * 120.00389 * 180.02562 * 23 5 4 41 41 H 1.08003 * 120.00189 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 0.0044 5 6 4.2717 0.0000 -0.0009 6 6 5.7787 0.0000 -0.0009 7 6 6.2810 0.0057 -1.4216 8 8 5.4930 0.0098 -2.3434 9 7 7.6062 0.0061 -1.6678 10 6 8.6698 0.0009 -0.6470 11 6 9.9028 0.6148 -1.3558 12 6 9.7589 0.0360 -2.7882 13 8 10.3003 -1.2847 -2.8566 14 6 10.4216 0.9383 -3.7970 15 1 9.8354 1.3934 -4.5818 16 6 11.7762 1.1831 -3.7181 17 7 12.4899 0.6288 -2.7627 18 14 12.5975 2.3022 -4.9682 19 1 12.5677 3.7022 -4.4742 20 1 14.0066 1.8761 -5.1635 21 1 11.8712 2.2177 -6.2606 22 6 8.2303 0.0055 -2.9990 23 6 3.5805 -1.1972 -0.0057 24 6 2.1982 -1.1971 -0.0058 25 1 -0.3633 -0.0049 1.0277 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3633 0.8925 -0.5096 28 1 1.6582 2.1325 -0.0004 29 1 4.1205 2.1324 0.0085 30 1 6.1420 0.8879 0.5166 31 1 6.1420 -0.8921 0.5094 32 1 8.3792 0.6131 0.2068 33 1 8.8831 -1.0190 -0.3266 34 1 9.8455 1.7033 -1.3667 35 1 10.8290 0.2785 -0.8898 36 1 11.2448 -1.3335 -2.6548 37 1 13.4430 0.8007 -2.7074 38 1 7.9468 -0.8967 -3.5410 39 1 7.9171 0.8887 -3.5557 40 1 4.1205 -2.1325 -0.0094 41 1 1.6582 -2.1324 -0.0100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592835517.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:29 Heat of formation + Delta-G solvation = -69.701712 kcal Electronic energy + Delta-G solvation = -22581.570014 eV Core-core repulsion = 19232.703039 eV Total energy + Delta-G solvation = -3348.866975 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.91234 -38.93170 -37.21575 -34.31055 -33.73123 -32.24133 -30.88905 -30.32198 -29.23503 -28.22981 -25.82249 -24.52821 -22.69954 -22.34565 -20.92351 -19.73265 -18.71293 -17.26954 -16.56578 -16.14692 -15.78645 -15.21669 -15.02666 -14.88297 -14.58101 -14.23923 -13.83396 -13.62601 -13.38674 -13.07978 -12.70261 -12.64312 -12.27387 -12.08365 -11.94886 -11.69917 -11.45374 -11.39755 -11.36714 -11.09818 -10.91992 -10.89693 -10.63979 -10.50276 -10.13296 -9.48900 -9.33740 -8.86177 -8.70185 -8.44295 -8.24781 -8.00700 -6.30766 -4.38095 1.34348 1.46753 3.07890 3.18658 3.26296 3.30755 3.48273 3.89367 4.25666 4.71033 4.78272 4.90805 4.95638 5.03492 5.08361 5.12154 5.42892 5.43982 5.48044 5.53987 5.57695 5.70161 5.72121 5.74877 5.89882 5.99713 6.08187 6.10563 6.22543 6.43253 6.44546 6.59420 6.66112 6.69088 6.89127 6.95720 7.05079 7.27495 7.32893 7.71177 8.00620 8.11822 8.62939 8.66661 9.28124 9.37047 10.76798 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.037498 B = 0.003139 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.526984 B = 8917.865811 C = 9143.169865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.120 4.120 4 C -0.102 4.102 5 C -0.063 4.063 6 C -0.099 4.099 7 C 0.522 3.478 8 O -0.547 6.547 9 N -0.610 5.610 10 C 0.094 3.906 11 C -0.135 4.135 12 C 0.247 3.753 13 O -0.585 6.585 14 C -0.534 4.534 15 H 0.064 0.936 16 C 0.072 3.928 17 N -0.896 5.896 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.123 3.877 23 C -0.102 4.102 24 C -0.120 4.120 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.382 0.618 37 H 0.268 0.732 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.293 -0.705 10.069 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.138 4.138 4 C -0.120 4.120 5 C -0.063 4.063 6 C -0.139 4.139 7 C 0.310 3.690 8 O -0.425 6.425 9 N -0.343 5.343 10 C -0.029 4.029 11 C -0.173 4.173 12 C 0.207 3.793 13 O -0.394 6.394 14 C -0.572 4.572 15 H 0.082 0.918 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.730 3.270 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C 0.001 3.999 23 C -0.120 4.120 24 C -0.138 4.138 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.232 0.768 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.138 0.862 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.223 -0.864 9.495 17.963 hybrid contribution 1.310 0.776 -0.442 1.586 sum -13.913 -0.088 9.053 16.599 Atomic orbital electron populations 1.20764 0.91468 1.02634 1.01985 1.19876 0.95865 0.93316 1.00361 1.20942 0.94035 0.97391 1.01468 1.20973 0.94193 0.97454 0.99338 1.19331 0.93841 0.93553 0.99608 1.20659 0.92755 1.04966 0.95490 1.20038 0.80933 0.77162 0.90835 1.90685 1.54580 1.50830 1.46394 1.48672 1.04610 1.71481 1.09541 1.22525 0.88949 1.00441 0.90972 1.23298 0.95303 1.00185 0.98540 1.19479 0.86894 0.81424 0.91554 1.86144 1.29567 1.30084 1.93620 1.21509 0.93735 1.28450 1.13538 0.91790 1.24985 0.97143 0.95439 0.95463 1.69696 1.07648 1.44127 1.32078 0.86412 0.78524 0.80457 0.81585 1.20487 1.21002 1.19679 1.22055 0.93722 1.01135 0.82941 1.20968 0.94191 0.97459 0.99351 1.20938 0.94029 0.97389 1.01488 0.91437 0.91706 0.91702 0.86279 0.86225 0.88245 0.88278 0.92134 0.91922 0.91445 0.89340 0.76829 0.92225 0.92197 0.91089 0.86246 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.09 -1.08 5.88 -104.62 -0.62 -1.70 16 3 C -0.12 -1.44 9.70 -39.58 -0.38 -1.83 16 4 C -0.10 -1.35 9.70 -39.58 -0.38 -1.73 16 5 C -0.06 -0.88 4.37 -104.62 -0.46 -1.34 16 6 C -0.10 -1.36 4.84 -29.04 -0.14 -1.50 16 7 C 0.52 9.75 7.84 -10.98 -0.09 9.66 16 8 O -0.55 -12.16 16.36 5.56 0.09 -12.07 16 9 N -0.61 -11.94 3.33 -170.51 -0.57 -12.51 16 10 C 0.09 1.64 6.68 -2.53 -0.02 1.62 16 11 C -0.13 -2.83 5.47 -24.58 -0.13 -2.97 16 12 C 0.25 5.89 0.84 -89.93 -0.08 5.81 16 13 O -0.59 -14.52 13.06 -35.23 -0.46 -14.98 16 14 C -0.53 -13.90 8.22 -34.44 -0.28 -14.18 16 15 H 0.06 1.68 7.58 -52.48 -0.40 1.29 16 16 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 17 N -0.90 -22.70 10.69 55.43 0.59 -22.11 16 18 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 C 0.12 2.79 6.22 -3.06 -0.02 2.77 16 23 C -0.10 -1.35 9.70 -39.59 -0.38 -1.73 16 24 C -0.12 -1.44 9.70 -39.58 -0.38 -1.82 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 28 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 29 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.10 1.17 7.79 -51.93 -0.40 0.76 16 31 H 0.10 1.17 8.09 -51.93 -0.42 0.75 16 32 H 0.06 0.86 7.48 -51.93 -0.39 0.48 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.46 8.04 -51.93 -0.42 1.05 16 35 H 0.09 1.93 7.54 -51.93 -0.39 1.54 16 36 H 0.38 9.41 7.49 45.56 0.34 9.75 16 37 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 38 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 39 H 0.07 1.65 7.66 -51.93 -0.40 1.25 16 40 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 341.48 15.07 5.15 5.15 Total: -1.00 -29.48 341.48 -8.72 -38.20 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -5.41 Total: 10.93 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -3.10 Total: -7.76 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.03 Total: -34.61 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.37 Total: -27.05 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.48 -8.72 -38.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592835517.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.499 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds