Wall clock time and date at job start Tue Mar 31 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38237 * 119.99944 * 2 1 4 4 C 1.38237 * 119.99768 * 179.78788 * 3 2 1 5 5 C 1.38237 * 119.99859 * 0.46579 * 4 3 2 6 6 C 1.50703 * 119.99799 * 179.78787 * 5 4 3 7 7 C 1.50695 * 109.47027 * 269.97645 * 6 5 4 8 8 O 1.21274 * 120.00348 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99544 * 180.02562 * 7 6 5 10 10 C 1.47422 * 125.64801 * 0.02562 * 9 7 6 11 11 C 1.54911 * 104.83085 * 204.09256 * 10 9 7 12 12 C 1.55161 * 101.58228 * 322.99254 * 11 10 9 13 13 O 1.42903 * 110.71949 * 277.14027 * 12 11 10 14 14 C 1.50698 * 110.72386 * 153.86666 * 12 11 10 15 15 H 1.08004 * 119.99819 * 241.45903 * 14 12 11 16 16 C 1.37879 * 120.00050 * 61.44986 * 14 12 11 17 17 N 1.31510 * 119.99758 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99877 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47288 * 90.00198 * 18 16 14 20 20 H 1.48506 * 109.46905 * 210.00162 * 18 16 14 21 21 H 1.48496 * 109.47147 * 329.99977 * 18 16 14 22 22 C 1.47020 * 125.64332 * 179.71880 * 9 7 6 23 23 C 1.38233 * 120.00166 * 359.76673 * 5 4 3 24 24 C 1.38232 * 119.99928 * 0.02562 * 23 5 4 25 25 H 1.09002 * 109.47152 * 269.72611 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.72711 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.72692 * 1 2 3 28 28 H 1.07998 * 120.00100 * 359.97438 * 3 2 1 29 29 H 1.07995 * 119.99857 * 180.24850 * 4 3 2 30 30 H 1.08999 * 109.46788 * 29.97756 * 6 5 4 31 31 H 1.09000 * 109.46518 * 149.97462 * 6 5 4 32 32 H 1.08996 * 110.37206 * 322.92911 * 10 9 7 33 33 H 1.09007 * 110.36452 * 85.14809 * 10 9 7 34 34 H 1.09001 * 111.00727 * 81.06368 * 11 10 9 35 35 H 1.09000 * 111.00399 * 204.92128 * 11 10 9 36 36 H 0.96702 * 113.99859 * 298.54051 * 13 12 11 37 37 H 0.97003 * 119.99780 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.88325 * 298.39045 * 22 9 7 39 39 H 1.08994 * 109.88673 * 59.56040 * 22 9 7 40 40 H 1.07999 * 120.00389 * 180.02562 * 23 5 4 41 41 H 1.08003 * 120.00189 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1971 0.0044 5 6 4.2717 0.0000 -0.0009 6 6 5.7787 0.0000 -0.0009 7 6 6.2810 0.0057 -1.4216 8 8 5.4930 0.0098 -2.3434 9 7 7.6062 0.0061 -1.6678 10 6 8.6698 0.0009 -0.6470 11 6 9.9028 0.6148 -1.3558 12 6 9.7589 0.0360 -2.7882 13 8 10.3003 -1.2847 -2.8566 14 6 10.4216 0.9383 -3.7970 15 1 9.8354 1.3934 -4.5818 16 6 11.7762 1.1831 -3.7181 17 7 12.4899 0.6288 -2.7627 18 14 12.5975 2.3022 -4.9682 19 1 12.5677 3.7022 -4.4742 20 1 14.0066 1.8761 -5.1635 21 1 11.8712 2.2177 -6.2606 22 6 8.2303 0.0055 -2.9990 23 6 3.5805 -1.1972 -0.0057 24 6 2.1982 -1.1971 -0.0058 25 1 -0.3633 -0.0049 1.0277 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3633 0.8925 -0.5096 28 1 1.6582 2.1325 -0.0004 29 1 4.1205 2.1324 0.0085 30 1 6.1420 0.8879 0.5166 31 1 6.1420 -0.8921 0.5094 32 1 8.3792 0.6131 0.2068 33 1 8.8831 -1.0190 -0.3266 34 1 9.8455 1.7033 -1.3667 35 1 10.8290 0.2785 -0.8898 36 1 11.2448 -1.3335 -2.6548 37 1 13.4430 0.8007 -2.7074 38 1 7.9468 -0.8967 -3.5410 39 1 7.9171 0.8887 -3.5557 40 1 4.1205 -2.1325 -0.0094 41 1 1.6582 -2.1324 -0.0100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592835517.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:29 Heat of formation + Delta-G solvation = -87.552537 kcal Electronic energy + Delta-G solvation = -22582.344084 eV Core-core repulsion = 19232.703039 eV Total energy + Delta-G solvation = -3349.641045 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.25037 -40.11802 -38.85761 -36.08166 -34.70083 -34.22013 -31.79539 -31.76652 -30.57556 -29.81242 -27.28913 -25.89056 -23.88575 -23.61378 -22.00860 -21.41841 -20.18882 -19.16181 -18.08545 -17.29210 -17.00546 -16.89021 -16.38177 -16.06593 -16.03112 -15.81331 -15.21357 -14.80701 -14.51132 -14.28357 -14.00869 -13.88120 -13.65417 -13.40966 -13.23476 -13.19347 -13.11121 -12.70517 -12.68422 -12.65909 -12.43363 -12.28724 -12.01563 -11.95092 -11.80024 -11.27666 -10.94522 -10.63564 -10.14953 -9.79019 -9.61693 -9.38027 -8.25469 -6.39624 0.39906 0.53844 1.40318 1.43728 1.52518 1.63403 2.06352 2.39282 2.87458 3.00053 3.64347 3.75879 3.90262 3.94798 4.01347 4.10742 4.16291 4.26727 4.31520 4.44459 4.53367 4.58384 4.63594 4.65113 4.69813 4.86085 4.87283 4.92127 4.99540 5.17408 5.21756 5.25059 5.31387 5.46927 5.51857 5.54070 5.70117 5.71928 5.75897 6.08029 6.15676 6.59536 6.66367 7.16248 7.30498 7.39991 8.80414 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.037498 B = 0.003139 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.526984 B = 8917.865811 C = 9143.169865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C -0.131 4.131 4 C -0.117 4.117 5 C -0.087 4.087 6 C -0.086 4.086 7 C 0.519 3.481 8 O -0.589 6.589 9 N -0.613 5.613 10 C 0.103 3.897 11 C -0.126 4.126 12 C 0.235 3.765 13 O -0.593 6.593 14 C -0.564 4.564 15 H 0.048 0.952 16 C 0.039 3.961 17 N -0.903 5.903 18 Si 0.958 3.042 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.279 1.279 22 C 0.129 3.871 23 C -0.118 4.118 24 C -0.131 4.131 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.139 0.861 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.380 0.620 37 H 0.272 0.728 38 H 0.039 0.961 39 H 0.055 0.945 40 H 0.126 0.874 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.113 -0.353 11.753 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.149 4.149 4 C -0.135 4.135 5 C -0.087 4.087 6 C -0.125 4.125 7 C 0.310 3.690 8 O -0.470 6.470 9 N -0.346 5.346 10 C -0.019 4.019 11 C -0.164 4.164 12 C 0.195 3.805 13 O -0.402 6.402 14 C -0.602 4.602 15 H 0.066 0.934 16 C -0.163 4.163 17 N -0.542 5.542 18 Si 0.783 3.217 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.204 1.204 22 C 0.006 3.994 23 C -0.136 4.136 24 C -0.149 4.149 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.157 0.843 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.229 0.771 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.144 0.856 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.040 -0.515 11.213 19.577 hybrid contribution 1.511 0.648 -1.006 1.928 sum -14.529 0.133 10.206 17.756 Atomic orbital electron populations 1.20820 0.89217 1.03439 1.03205 1.20304 0.97649 0.92975 0.98980 1.21271 0.93880 0.98624 1.01124 1.21218 0.95056 0.97647 0.99626 1.19477 0.94039 0.94138 1.01058 1.20672 0.92746 1.07305 0.91810 1.20999 0.79911 0.75464 0.92644 1.90659 1.55468 1.52525 1.48319 1.48749 1.05556 1.71762 1.08507 1.22575 0.86586 1.01695 0.91049 1.23077 0.96879 0.99499 0.96991 1.19605 0.87116 0.80787 0.93011 1.86129 1.29401 1.30806 1.93821 1.21705 0.94533 1.29683 1.14279 0.93377 1.25560 0.97353 0.96454 0.96936 1.69744 1.07889 1.44145 1.32444 0.85568 0.77671 0.79144 0.79283 1.19846 1.20234 1.20430 1.21746 0.93514 0.99343 0.84784 1.21214 0.95067 0.97654 0.99661 1.21265 0.93858 0.98627 1.01132 0.89889 0.90922 0.90925 0.84330 0.85561 0.85672 0.85836 0.87759 0.90739 0.92451 0.90073 0.77068 0.91852 0.94249 0.92706 0.85628 0.84328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.24 0.71 -0.85 16 2 C -0.10 -2.09 5.88 -19.86 -0.12 -2.21 16 3 C -0.13 -2.94 9.70 22.27 0.22 -2.72 16 4 C -0.12 -2.97 9.70 22.27 0.22 -2.75 16 5 C -0.09 -2.31 4.37 -19.86 -0.09 -2.40 16 6 C -0.09 -2.16 4.84 29.10 0.14 -2.02 16 7 C 0.52 18.93 7.84 87.65 0.69 19.62 16 8 O -0.59 -26.47 16.36 -3.01 -0.05 -26.52 16 9 N -0.61 -23.56 3.33 -811.77 -2.70 -26.26 16 10 C 0.10 3.36 6.68 86.86 0.58 3.94 16 11 C -0.13 -5.22 5.47 31.99 0.17 -5.05 16 12 C 0.23 11.38 0.84 -10.35 -0.01 11.37 16 13 O -0.59 -29.83 13.06 -148.98 -1.95 -31.78 16 14 C -0.56 -29.99 8.22 25.60 0.21 -29.78 16 15 H 0.05 2.63 7.58 -2.91 -0.02 2.61 16 16 C 0.04 1.97 5.28 84.66 0.45 2.42 16 17 N -0.90 -45.48 10.69 21.45 0.23 -45.26 16 18 Si 0.96 41.31 29.54 68.60 2.03 43.34 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 C 0.13 6.02 6.22 86.73 0.54 6.56 16 23 C -0.12 -2.99 9.70 22.27 0.22 -2.77 16 24 C -0.13 -2.93 9.70 22.27 0.22 -2.71 16 25 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 27 H 0.07 0.92 8.08 -2.38 -0.02 0.90 16 28 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 29 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 30 H 0.13 2.49 7.79 -2.39 -0.02 2.47 16 31 H 0.12 2.50 8.09 -2.39 -0.02 2.48 16 32 H 0.10 2.55 7.48 -2.39 -0.02 2.53 16 33 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.06 2.46 8.04 -2.39 -0.02 2.44 16 35 H 0.08 3.48 7.54 -2.39 -0.02 3.46 16 36 H 0.38 18.96 7.49 -74.06 -0.55 18.41 16 37 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 38 H 0.04 1.95 8.07 -2.39 -0.02 1.93 16 39 H 0.05 2.67 7.66 -2.39 -0.02 2.66 16 40 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 41 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -64.48 341.48 2.18 -62.31 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: 0.47 Total: 33.52 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 4.15 Total: -9.35 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -2.47 Total: -71.52 kcal Atomic # 8 Polarization: -56.30 SS G_CDS: -2.00 Total: -58.30 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -64.48 2.18 -62.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592835517.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.246 kcal (2) G-P(sol) polarization free energy of solvation -64.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds