Wall clock time and date at job start Tue Mar 31 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38262 * 119.99658 * 2 1 4 4 C 1.38208 * 119.99554 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.00357 * 359.97438 * 4 3 2 6 6 C 1.38220 * 119.99681 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99654 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46973 * 90.00436 * 7 6 5 9 9 O 1.21279 * 120.00011 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00030 * 179.97438 * 8 7 6 11 11 C 1.47422 * 125.64753 * 359.68946 * 10 8 7 12 12 C 1.55134 * 104.72061 * 155.81449 * 11 10 8 13 13 C 1.55162 * 101.48380 * 37.29799 * 12 11 10 14 14 O 1.42907 * 110.71594 * 82.69284 * 13 12 11 15 15 C 1.50695 * 110.87258 * 205.89499 * 13 12 11 16 16 H 1.07997 * 120.00027 * 113.61074 * 15 13 12 17 17 C 1.37883 * 120.00138 * 293.61237 * 15 13 12 18 18 N 1.31515 * 119.99504 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 120.00135 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47078 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47073 * 119.99784 * 19 17 15 22 22 H 1.48499 * 109.47220 * 239.99982 * 19 17 15 23 23 C 1.47024 * 125.64557 * 180.02562 * 10 8 7 24 24 C 1.38205 * 119.99867 * 180.02562 * 2 1 3 25 25 H 1.09006 * 109.46624 * 90.00384 * 1 2 3 26 26 H 1.08990 * 109.47123 * 210.00160 * 1 2 3 27 27 H 1.08997 * 109.47214 * 330.00730 * 1 2 3 28 28 H 1.07992 * 119.99989 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.00313 * 179.97438 * 4 3 2 30 30 H 1.08000 * 120.00604 * 179.70652 * 5 4 3 31 31 H 1.08997 * 109.47118 * 210.00049 * 7 6 5 32 32 H 1.08996 * 109.47165 * 330.00477 * 7 6 5 33 33 H 1.08994 * 110.36982 * 274.74964 * 11 10 8 34 34 H 1.09000 * 110.36315 * 37.07093 * 11 10 8 35 35 H 1.08991 * 111.19668 * 279.19289 * 12 11 10 36 36 H 1.09000 * 110.93526 * 155.29000 * 12 11 10 37 37 H 0.96695 * 113.99743 * 66.48222 * 14 13 12 38 38 H 0.97006 * 119.99542 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.88270 * 300.43544 * 23 10 8 40 40 H 1.08998 * 109.88535 * 61.60558 * 23 10 8 41 41 H 1.08005 * 120.00151 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5806 -1.1969 0.0005 7 6 4.3342 -2.5020 0.0011 8 6 4.5858 -2.9361 1.4221 9 8 4.1924 -2.2528 2.3436 10 7 5.2481 -4.0837 1.6690 11 6 5.7734 -5.0090 0.6486 12 6 6.9244 -5.7679 1.3599 13 6 6.3470 -5.9344 2.7904 14 8 5.4737 -7.0637 2.8548 15 6 7.4541 -6.0604 3.8050 16 1 7.6011 -5.2856 4.5429 17 6 8.2794 -7.1648 3.7914 18 7 8.1007 -8.1081 2.8925 19 14 9.6521 -7.3207 5.0485 20 1 9.6419 -6.1347 5.9422 21 1 9.4467 -8.5500 5.8560 22 1 10.9587 -7.4015 4.3474 23 6 5.5600 -4.6236 3.0004 24 6 2.1981 -1.1969 -0.0005 25 1 -0.3633 -0.0001 -1.0278 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1327 -0.0010 30 1 5.3517 0.0000 -0.0057 31 1 3.7450 -3.2620 -0.5120 32 1 5.2864 -2.3720 -0.5131 33 1 4.9966 -5.7045 0.3312 34 1 6.1579 -4.4525 -0.2061 35 1 7.8383 -5.1741 1.3742 36 1 7.0983 -6.7376 0.8935 37 1 5.9189 -7.9128 2.7290 38 1 8.6811 -8.8853 2.8831 39 1 6.1692 -3.9107 3.5561 40 1 4.6371 -4.8280 3.5432 41 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592838367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:32 Heat of formation + Delta-G solvation = -69.697744 kcal Electronic energy + Delta-G solvation = -22652.050351 eV Core-core repulsion = 19303.183548 eV Total energy + Delta-G solvation = -3348.866803 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.92049 -38.92377 -37.19842 -34.33034 -33.44626 -32.17696 -32.00131 -29.88992 -28.58804 -27.54905 -26.81356 -24.93177 -22.54455 -22.04339 -20.88791 -19.65746 -18.64256 -17.31317 -16.57235 -16.47624 -15.77227 -15.30329 -15.01125 -14.86688 -14.45779 -14.19488 -13.80644 -13.61930 -13.19770 -13.05513 -12.83945 -12.58895 -12.26222 -12.04544 -11.95811 -11.73077 -11.49777 -11.40750 -11.37505 -11.04698 -10.96152 -10.91839 -10.62905 -10.48619 -10.14924 -9.50161 -9.37044 -8.74400 -8.69184 -8.53527 -8.23821 -8.01154 -6.32755 -4.39717 1.37116 1.44097 3.07514 3.16945 3.26157 3.30932 3.48388 3.89204 4.24688 4.68174 4.77942 4.89032 4.93365 5.07000 5.12565 5.26743 5.29353 5.46757 5.50422 5.53834 5.58158 5.66814 5.74026 5.77430 5.89809 5.98956 6.06692 6.13622 6.21949 6.44768 6.48172 6.57734 6.65584 6.68342 6.88365 6.95053 7.05120 7.27121 7.31237 7.70873 7.97847 8.11537 8.61580 8.66011 9.28806 9.42752 10.75109 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035207 B = 0.003231 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.101546 B = 8664.520137 C = 8856.270025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.125 4.125 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.054 4.054 7 C -0.100 4.100 8 C 0.523 3.477 9 O -0.546 6.546 10 N -0.610 5.610 11 C 0.095 3.905 12 C -0.137 4.137 13 C 0.247 3.753 14 O -0.587 6.587 15 C -0.534 4.534 16 H 0.065 0.935 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.123 3.877 24 C -0.105 4.105 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.386 0.614 38 H 0.269 0.731 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.997 11.310 -10.108 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.144 4.144 4 C -0.135 4.135 5 C -0.129 4.129 6 C -0.054 4.054 7 C -0.139 4.139 8 C 0.311 3.689 9 O -0.425 6.425 10 N -0.343 5.343 11 C -0.028 4.028 12 C -0.176 4.176 13 C 0.207 3.793 14 O -0.397 6.397 15 C -0.572 4.572 16 H 0.083 0.917 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.208 1.208 23 C 0.001 3.999 24 C -0.124 4.124 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.238 0.762 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.620 12.027 -9.581 17.628 hybrid contribution 1.355 -0.707 0.492 1.605 sum -7.265 11.319 -9.089 16.233 Atomic orbital electron populations 1.20772 0.91360 1.02763 1.02030 1.19846 0.95925 0.93127 0.99992 1.20958 0.94267 0.97269 1.01860 1.21046 0.94283 0.97770 1.00381 1.20972 0.99734 0.91990 1.00188 1.19329 0.93521 0.93798 0.98792 1.20669 1.01910 0.95811 0.95546 1.20020 0.78070 0.80057 0.90803 1.90688 1.51683 1.53679 1.46413 1.48665 1.54915 1.21155 1.09579 1.22542 0.97469 0.91835 0.90931 1.23351 0.95449 0.99979 0.98807 1.19448 0.86249 0.82266 0.91345 1.86099 1.39580 1.18414 1.95640 1.21593 1.13554 1.06366 1.15700 0.91657 1.24997 0.97359 0.95229 0.95509 1.69585 1.39824 1.09919 1.34474 0.86341 0.81131 0.78315 0.81095 1.19567 1.20729 1.20806 1.22072 0.99473 0.95461 0.82890 1.20857 0.93427 0.97603 1.00464 0.91374 0.91543 0.91692 0.86425 0.86214 0.86284 0.88262 0.88197 0.91834 0.92129 0.91422 0.89654 0.76198 0.92145 0.91107 0.92170 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 36.01 0.36 -0.66 16 2 C -0.09 -1.07 5.88 -104.62 -0.62 -1.69 16 3 C -0.13 -1.44 9.70 -39.58 -0.38 -1.82 16 4 C -0.12 -1.39 10.05 -39.59 -0.40 -1.78 16 5 C -0.11 -1.47 9.70 -39.58 -0.38 -1.85 16 6 C -0.05 -0.76 4.37 -104.62 -0.46 -1.22 16 7 C -0.10 -1.37 4.83 -29.03 -0.14 -1.51 16 8 C 0.52 9.76 7.84 -10.99 -0.09 9.67 16 9 O -0.55 -12.16 16.36 5.56 0.09 -12.07 16 10 N -0.61 -11.95 3.32 -170.38 -0.57 -12.52 16 11 C 0.09 1.66 6.69 -2.41 -0.02 1.64 16 12 C -0.14 -2.88 5.69 -24.46 -0.14 -3.02 16 13 C 0.25 5.92 0.85 -89.94 -0.08 5.84 16 14 O -0.59 -14.73 13.08 -35.23 -0.46 -15.19 16 15 C -0.53 -13.87 8.22 -34.44 -0.28 -14.16 16 16 H 0.07 1.71 7.53 -52.49 -0.40 1.32 16 17 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 18 N -0.90 -22.77 10.70 55.43 0.59 -22.17 16 19 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 C 0.12 2.78 6.22 -3.06 -0.02 2.76 16 24 C -0.11 -1.41 9.36 -39.59 -0.37 -1.79 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 27 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 28 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 31 H 0.10 1.17 8.08 -51.93 -0.42 0.75 16 32 H 0.10 1.17 7.80 -51.93 -0.40 0.76 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.86 7.48 -51.93 -0.39 0.47 16 35 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 36 H 0.08 1.86 7.77 -51.93 -0.40 1.45 16 37 H 0.39 9.75 6.98 45.56 0.32 10.07 16 38 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 39 H 0.07 1.64 7.63 -51.93 -0.40 1.25 16 40 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 41 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 341.43 15.07 5.15 5.15 Total: -1.00 -29.47 341.43 -8.76 -38.23 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -5.44 Total: 11.35 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -3.10 Total: -7.86 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.03 Total: -34.69 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.37 Total: -27.26 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.47 -8.76 -38.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.465 kcal (2) G-P(sol) polarization free energy of solvation -29.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds