Wall clock time and date at job start Tue Mar 31 2020 06:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38262 * 119.99658 * 2 1 4 4 C 1.38208 * 119.99554 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.00357 * 359.97438 * 4 3 2 6 6 C 1.38220 * 119.99681 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99654 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46973 * 90.00436 * 7 6 5 9 9 O 1.21279 * 120.00011 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00030 * 179.97438 * 8 7 6 11 11 C 1.47422 * 125.64753 * 359.68946 * 10 8 7 12 12 C 1.55134 * 104.72061 * 155.81449 * 11 10 8 13 13 C 1.55162 * 101.48380 * 37.29799 * 12 11 10 14 14 O 1.42907 * 110.71594 * 82.69284 * 13 12 11 15 15 C 1.50695 * 110.87258 * 205.89499 * 13 12 11 16 16 H 1.07997 * 120.00027 * 113.61074 * 15 13 12 17 17 C 1.37883 * 120.00138 * 293.61237 * 15 13 12 18 18 N 1.31515 * 119.99504 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 120.00135 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47078 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47073 * 119.99784 * 19 17 15 22 22 H 1.48499 * 109.47220 * 239.99982 * 19 17 15 23 23 C 1.47024 * 125.64557 * 180.02562 * 10 8 7 24 24 C 1.38205 * 119.99867 * 180.02562 * 2 1 3 25 25 H 1.09006 * 109.46624 * 90.00384 * 1 2 3 26 26 H 1.08990 * 109.47123 * 210.00160 * 1 2 3 27 27 H 1.08997 * 109.47214 * 330.00730 * 1 2 3 28 28 H 1.07992 * 119.99989 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.00313 * 179.97438 * 4 3 2 30 30 H 1.08000 * 120.00604 * 179.70652 * 5 4 3 31 31 H 1.08997 * 109.47118 * 210.00049 * 7 6 5 32 32 H 1.08996 * 109.47165 * 330.00477 * 7 6 5 33 33 H 1.08994 * 110.36982 * 274.74964 * 11 10 8 34 34 H 1.09000 * 110.36315 * 37.07093 * 11 10 8 35 35 H 1.08991 * 111.19668 * 279.19289 * 12 11 10 36 36 H 1.09000 * 110.93526 * 155.29000 * 12 11 10 37 37 H 0.96695 * 113.99743 * 66.48222 * 14 13 12 38 38 H 0.97006 * 119.99542 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.88270 * 300.43544 * 23 10 8 40 40 H 1.08998 * 109.88535 * 61.60558 * 23 10 8 41 41 H 1.08005 * 120.00151 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5806 -1.1969 0.0005 7 6 4.3342 -2.5020 0.0011 8 6 4.5858 -2.9361 1.4221 9 8 4.1924 -2.2528 2.3436 10 7 5.2481 -4.0837 1.6690 11 6 5.7734 -5.0090 0.6486 12 6 6.9244 -5.7679 1.3599 13 6 6.3470 -5.9344 2.7904 14 8 5.4737 -7.0637 2.8548 15 6 7.4541 -6.0604 3.8050 16 1 7.6011 -5.2856 4.5429 17 6 8.2794 -7.1648 3.7914 18 7 8.1007 -8.1081 2.8925 19 14 9.6521 -7.3207 5.0485 20 1 9.6419 -6.1347 5.9422 21 1 9.4467 -8.5500 5.8560 22 1 10.9587 -7.4015 4.3474 23 6 5.5600 -4.6236 3.0004 24 6 2.1981 -1.1969 -0.0005 25 1 -0.3633 -0.0001 -1.0278 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1327 -0.0010 30 1 5.3517 0.0000 -0.0057 31 1 3.7450 -3.2620 -0.5120 32 1 5.2864 -2.3720 -0.5131 33 1 4.9966 -5.7045 0.3312 34 1 6.1579 -4.4525 -0.2061 35 1 7.8383 -5.1741 1.3742 36 1 7.0983 -6.7376 0.8935 37 1 5.9189 -7.9128 2.7290 38 1 8.6811 -8.8853 2.8831 39 1 6.1692 -3.9107 3.5561 40 1 4.6371 -4.8280 3.5432 41 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592838367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:31 Heat of formation + Delta-G solvation = -87.485109 kcal Electronic energy + Delta-G solvation = -22652.821669 eV Core-core repulsion = 19303.183548 eV Total energy + Delta-G solvation = -3349.638121 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.25747 -40.11828 -38.84866 -36.11103 -34.42926 -34.15767 -32.93812 -31.52865 -30.17878 -28.82885 -27.69283 -26.69416 -24.05280 -23.03914 -22.02840 -21.34032 -20.08783 -19.21428 -18.09098 -17.42087 -17.08768 -16.93562 -16.59907 -16.08628 -15.98971 -15.55504 -15.21783 -14.81421 -14.52135 -14.09536 -13.98547 -13.86458 -13.78527 -13.40114 -13.23708 -13.19713 -13.12585 -12.76276 -12.72469 -12.66746 -12.42951 -12.27752 -12.02112 -11.91652 -11.84271 -11.30099 -10.96356 -10.64000 -10.14420 -9.68115 -9.62548 -9.46451 -8.27161 -6.41011 0.42228 0.51680 1.39352 1.43926 1.53852 1.62647 2.05955 2.38894 2.87792 2.98331 3.63280 3.73707 3.89014 3.94212 4.01145 4.07506 4.25108 4.30949 4.33052 4.45099 4.47755 4.57671 4.59745 4.63252 4.70128 4.82771 4.84473 4.91523 4.99592 5.17302 5.19620 5.25378 5.32034 5.45841 5.52129 5.57595 5.67343 5.71719 5.75587 6.05038 6.15857 6.58428 6.65646 7.15495 7.30044 7.44032 8.79371 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035207 B = 0.003231 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.101546 B = 8664.520137 C = 8856.270025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C -0.131 4.131 4 C -0.123 4.123 5 C -0.129 4.129 6 C -0.076 4.076 7 C -0.087 4.087 8 C 0.520 3.480 9 O -0.588 6.588 10 N -0.613 5.613 11 C 0.104 3.896 12 C -0.129 4.129 13 C 0.235 3.765 14 O -0.595 6.595 15 C -0.563 4.563 16 H 0.050 0.950 17 C 0.037 3.963 18 N -0.907 5.907 19 Si 0.960 3.040 20 H -0.277 1.277 21 H -0.278 1.278 22 H -0.274 1.274 23 C 0.129 3.871 24 C -0.126 4.126 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.383 0.617 38 H 0.273 0.727 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 12.203 -11.770 18.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.141 4.141 5 C -0.147 4.147 6 C -0.076 4.076 7 C -0.126 4.126 8 C 0.310 3.690 9 O -0.469 6.469 10 N -0.346 5.346 11 C -0.018 4.018 12 C -0.168 4.168 13 C 0.195 3.805 14 O -0.405 6.405 15 C -0.601 4.601 16 H 0.068 0.932 17 C -0.164 4.164 18 N -0.546 5.546 19 Si 0.786 3.214 20 H -0.202 1.202 21 H -0.204 1.204 22 H -0.199 1.199 23 C 0.006 3.994 24 C -0.144 4.144 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.161 0.839 29 H 0.160 0.840 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.234 0.766 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.720 12.914 -11.275 19.234 hybrid contribution 1.341 -0.949 1.047 1.949 sum -7.379 11.965 -10.228 17.384 Atomic orbital electron populations 1.20817 0.89469 1.03259 1.03212 1.20243 0.97521 0.92958 0.99190 1.21335 0.94417 0.98197 1.00887 1.21397 0.94816 0.98330 0.99584 1.21221 1.00368 0.92433 1.00718 1.19484 0.93980 0.94137 1.00007 1.20686 1.03707 0.96370 0.91882 1.20971 0.76558 0.78850 0.92601 1.90662 1.53183 1.54759 1.48335 1.48742 1.55402 1.21897 1.08551 1.22595 0.96304 0.91843 0.91054 1.23142 0.96393 1.00047 0.97185 1.19595 0.85979 0.82070 0.92877 1.86083 1.40003 1.18602 1.95850 1.21781 1.15033 1.06750 1.16570 0.93171 1.25589 0.98983 0.94857 0.96994 1.69630 1.40188 1.09941 1.34855 0.85476 0.79004 0.77866 0.79062 1.20187 1.20388 1.19889 1.21764 0.97971 0.94957 0.84732 1.21086 0.93598 0.98482 1.01216 0.89765 0.91790 0.90468 0.83914 0.83975 0.85586 0.85899 0.85551 0.90818 0.87656 0.92137 0.90435 0.76583 0.91716 0.92631 0.94292 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 10.01 71.24 0.71 -1.09 16 2 C -0.10 -2.23 5.88 -19.86 -0.12 -2.35 16 3 C -0.13 -2.72 9.70 22.27 0.22 -2.50 16 4 C -0.12 -2.70 10.05 22.27 0.22 -2.48 16 5 C -0.13 -3.25 9.70 22.27 0.22 -3.04 16 6 C -0.08 -2.03 4.37 -19.86 -0.09 -2.11 16 7 C -0.09 -2.20 4.83 29.10 0.14 -2.06 16 8 C 0.52 19.00 7.84 87.66 0.69 19.68 16 9 O -0.59 -26.50 16.36 -3.03 -0.05 -26.55 16 10 N -0.61 -23.63 3.32 -811.35 -2.70 -26.33 16 11 C 0.10 3.40 6.69 86.93 0.58 3.98 16 12 C -0.13 -5.34 5.69 32.07 0.18 -5.16 16 13 C 0.23 11.43 0.85 -10.35 -0.01 11.42 16 14 O -0.60 -30.37 13.08 -148.98 -1.95 -32.32 16 15 C -0.56 -29.91 8.22 25.60 0.21 -29.70 16 16 H 0.05 2.73 7.53 -2.91 -0.02 2.71 16 17 C 0.04 1.88 5.28 84.66 0.45 2.33 16 18 N -0.91 -45.76 10.70 21.45 0.23 -45.53 16 19 Si 0.96 41.24 29.54 68.60 2.03 43.26 16 20 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 21 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 23 C 0.13 6.02 6.22 86.73 0.54 6.55 16 24 C -0.13 -3.24 9.36 22.27 0.21 -3.03 16 25 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.06 1.06 8.08 -2.39 -0.02 1.04 16 27 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 28 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 30 H 0.13 2.85 8.06 -2.91 -0.02 2.82 16 31 H 0.12 2.52 8.08 -2.39 -0.02 2.50 16 32 H 0.13 2.51 7.80 -2.39 -0.02 2.49 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.11 2.56 7.48 -2.39 -0.02 2.54 16 35 H 0.06 2.56 8.04 -2.39 -0.02 2.54 16 36 H 0.08 3.32 7.77 -2.39 -0.02 3.30 16 37 H 0.38 19.62 6.98 -74.06 -0.52 19.11 16 38 H 0.27 13.04 8.31 -92.70 -0.77 12.27 16 39 H 0.06 2.71 7.63 -2.39 -0.02 2.69 16 40 H 0.04 1.93 8.07 -2.39 -0.02 1.91 16 41 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -64.60 341.43 2.22 -62.38 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 0.51 Total: 34.63 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 4.15 Total: -9.55 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: -2.47 Total: -71.85 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -2.00 Total: -58.87 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Total: -64.60 2.22 -62.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.108 kcal (2) G-P(sol) polarization free energy of solvation -64.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds