Wall clock time and date at job start Tue Mar 31 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38248 * 120.00015 * 2 1 4 4 C 1.38221 * 119.99762 * 180.23072 * 3 2 1 5 5 C 1.38254 * 119.99890 * 359.53100 * 4 3 2 6 6 C 1.38209 * 119.99903 * 0.27967 * 5 4 3 7 7 C 1.50701 * 119.99915 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47408 * 89.99829 * 7 6 5 9 9 O 1.21291 * 119.99552 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00377 * 179.97438 * 8 7 6 11 11 C 1.47427 * 125.64741 * 0.03047 * 10 8 7 12 12 C 1.54905 * 104.83338 * 204.08526 * 11 10 8 13 13 C 1.55159 * 101.58129 * 322.99022 * 12 11 10 14 14 O 1.42900 * 110.72116 * 276.95717 * 13 12 11 15 15 C 1.50704 * 110.71905 * 153.86269 * 13 12 11 16 16 H 1.07998 * 119.99910 * 5.09442 * 15 13 12 17 17 C 1.37873 * 120.00059 * 185.09390 * 15 13 12 18 18 N 1.31514 * 120.00170 * 183.77404 * 17 15 13 19 19 Si 1.86803 * 119.99896 * 3.77336 * 17 15 13 20 20 H 1.48501 * 109.47261 * 84.83061 * 19 17 15 21 21 H 1.48503 * 109.47055 * 204.82606 * 19 17 15 22 22 H 1.48497 * 109.47255 * 324.82869 * 19 17 15 23 23 C 1.47021 * 125.65122 * 179.71194 * 10 8 7 24 24 C 1.38209 * 119.99519 * 179.82777 * 2 1 3 25 25 H 1.09002 * 109.47477 * 270.17503 * 1 2 3 26 26 H 1.09006 * 109.46913 * 30.17257 * 1 2 3 27 27 H 1.09002 * 109.47506 * 150.16558 * 1 2 3 28 28 H 1.07999 * 120.00650 * 0.03821 * 3 2 1 29 29 H 1.08001 * 120.00083 * 179.80574 * 4 3 2 30 30 H 1.07996 * 119.99622 * 180.25408 * 5 4 3 31 31 H 1.09001 * 109.46961 * 210.00069 * 7 6 5 32 32 H 1.09002 * 109.46957 * 329.99580 * 7 6 5 33 33 H 1.09003 * 110.36502 * 322.92803 * 11 10 8 34 34 H 1.09002 * 110.36616 * 85.24867 * 11 10 8 35 35 H 1.09005 * 111.00355 * 81.06339 * 12 11 10 36 36 H 1.08995 * 111.00693 * 204.87778 * 12 11 10 37 37 H 0.96695 * 113.99821 * 298.55230 * 14 13 12 38 38 H 0.96998 * 120.00026 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.88369 * 298.40197 * 23 10 8 40 40 H 1.09004 * 109.87738 * 59.56633 * 23 10 8 41 41 H 1.08001 * 120.00321 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0048 5 6 4.2717 -0.0001 0.0002 6 6 3.5806 -1.1970 0.0041 7 6 4.3341 -2.5021 0.0090 8 6 4.5848 -2.9322 1.4313 9 8 4.1900 -2.2466 2.3507 10 7 5.2467 -4.0791 1.6819 11 6 5.7789 -5.0039 0.6645 12 6 5.8650 -6.3747 1.3808 13 6 6.2996 -5.9528 2.8093 14 8 7.7149 -5.7661 2.8728 15 6 5.8520 -6.9718 3.8255 16 1 5.3796 -7.8870 3.5005 17 6 6.0457 -6.7357 5.1700 18 7 5.7232 -7.6560 6.0524 19 14 6.7660 -5.1085 5.7382 20 1 5.6808 -4.1021 5.8595 21 1 7.4213 -5.2913 7.0582 22 1 7.7686 -4.6385 4.7487 23 6 5.5635 -4.6120 3.0150 24 6 2.1980 -1.1970 0.0036 25 1 -0.3634 0.0031 1.0277 26 1 -0.3633 0.8885 -0.5165 27 1 -0.3634 -0.8915 -0.5113 28 1 1.6584 2.1326 0.0006 29 1 4.1205 2.1325 -0.0080 30 1 5.3517 -0.0001 0.0005 31 1 3.7451 -3.2635 -0.5024 32 1 5.2866 -2.3736 -0.5051 33 1 5.1005 -5.0626 -0.1867 34 1 6.7687 -4.6824 0.3403 35 1 4.8933 -6.8684 1.3978 36 1 6.6167 -7.0122 0.9155 37 1 8.2259 -6.5628 2.6748 38 1 5.8591 -7.4897 6.9983 39 1 6.2055 -3.9128 3.5508 40 1 4.6437 -4.7784 3.5758 41 1 1.6580 -2.1323 0.0060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592838369.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:34 Heat of formation + Delta-G solvation = -56.963312 kcal Electronic energy + Delta-G solvation = -22906.399409 eV Core-core repulsion = 19558.084812 eV Total energy + Delta-G solvation = -3348.314597 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.02955 -39.07355 -37.46115 -34.55498 -33.49538 -32.44971 -32.04147 -30.26920 -28.85537 -27.72028 -26.86262 -24.77000 -22.87315 -22.14254 -20.94631 -19.78370 -18.91930 -17.26459 -16.82668 -16.52728 -15.97412 -15.53053 -15.00475 -14.86640 -14.70943 -14.19671 -13.96140 -13.70132 -13.19653 -13.10212 -12.93312 -12.75614 -12.63276 -12.37575 -12.08092 -11.93888 -11.83517 -11.69161 -11.40268 -11.10145 -11.00894 -10.93049 -10.64973 -10.30975 -10.16644 -9.55990 -9.09297 -8.77162 -8.75248 -8.59110 -8.47843 -8.13351 -6.24427 -4.37108 1.33081 1.40682 2.97977 3.28839 3.39463 3.48441 3.62028 3.83144 4.41639 4.62362 4.73971 4.84886 4.88242 5.06582 5.08562 5.15213 5.20394 5.24404 5.29143 5.45619 5.48303 5.51153 5.56375 5.64508 5.68190 5.72620 5.92715 6.05721 6.07404 6.10589 6.44203 6.46147 6.51852 6.54448 6.61095 6.61349 6.73901 7.01326 7.02898 7.46229 7.96875 8.16819 8.54471 8.70304 8.87009 9.38929 10.85681 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024124 B = 0.003952 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.371109 B = 7084.021784 C = 7324.112327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.125 4.125 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.056 4.056 7 C -0.098 4.098 8 C 0.522 3.478 9 O -0.540 6.540 10 N -0.612 5.612 11 C 0.100 3.900 12 C -0.146 4.146 13 C 0.215 3.785 14 O -0.573 6.573 15 C -0.553 4.553 16 H 0.081 0.919 17 C 0.091 3.909 18 N -0.885 5.885 19 Si 0.863 3.137 20 H -0.279 1.279 21 H -0.295 1.295 22 H -0.228 1.228 23 C 0.113 3.887 24 C -0.105 4.105 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.365 0.635 38 H 0.268 0.732 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.202 11.826 -16.240 20.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.143 4.143 4 C -0.135 4.135 5 C -0.129 4.129 6 C -0.056 4.056 7 C -0.138 4.138 8 C 0.310 3.690 9 O -0.417 6.417 10 N -0.346 5.346 11 C -0.023 4.023 12 C -0.184 4.184 13 C 0.175 3.825 14 O -0.380 6.380 15 C -0.590 4.590 16 H 0.099 0.901 17 C -0.115 4.115 18 N -0.521 5.521 19 Si 0.690 3.310 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.151 1.151 23 C -0.009 4.009 24 C -0.123 4.123 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.212 0.788 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.647 12.819 -15.423 20.586 hybrid contribution 0.526 0.105 0.421 0.682 sum -4.121 12.924 -15.002 20.226 Atomic orbital electron populations 1.20780 0.91304 1.02481 1.02398 1.19850 0.95967 0.93112 0.99864 1.20970 0.94265 0.97313 1.01735 1.21049 0.94295 0.97761 1.00355 1.20960 0.99701 0.92018 1.00249 1.19307 0.93543 0.93736 0.99054 1.20669 1.01957 0.95930 0.95264 1.20093 0.78082 0.79904 0.90935 1.90718 1.51227 1.53136 1.46636 1.48691 1.55181 1.21586 1.09177 1.22362 0.98258 0.90538 0.91133 1.23328 1.02727 0.94603 0.97746 1.19976 0.79427 0.91039 0.92074 1.86516 1.18954 1.39245 1.93267 1.21202 1.42597 1.04944 0.90242 0.90120 1.24964 0.93146 0.96754 0.96611 1.69913 1.46165 1.33826 1.02151 0.87230 0.81351 0.84077 0.78325 1.20488 1.22202 1.15109 1.22579 0.99922 0.95178 0.83190 1.20863 0.93393 0.97656 1.00399 0.91156 0.91737 0.91600 0.86375 0.86199 0.86330 0.88142 0.88198 0.91500 0.91552 0.90203 0.90531 0.78754 0.92249 0.92234 0.89946 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 36.01 0.36 -0.67 16 2 C -0.09 -1.05 5.88 -104.63 -0.62 -1.67 16 3 C -0.12 -1.43 9.70 -39.58 -0.38 -1.81 16 4 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 5 C -0.11 -1.45 9.70 -39.59 -0.38 -1.84 16 6 C -0.06 -0.77 4.37 -104.62 -0.46 -1.23 16 7 C -0.10 -1.29 4.84 -29.04 -0.14 -1.43 16 8 C 0.52 9.62 7.84 -10.99 -0.09 9.54 16 9 O -0.54 -12.24 16.36 5.55 0.09 -12.15 16 10 N -0.61 -11.61 3.33 -170.51 -0.57 -12.18 16 11 C 0.10 1.50 6.68 -2.53 -0.02 1.49 16 12 C -0.15 -2.52 6.22 -24.58 -0.15 -2.67 16 13 C 0.21 4.73 0.68 -89.93 -0.06 4.67 16 14 O -0.57 -12.23 10.47 -35.23 -0.37 -12.60 16 15 C -0.55 -14.63 8.72 -34.44 -0.30 -14.93 16 16 H 0.08 2.28 8.03 -52.49 -0.42 1.86 16 17 C 0.09 2.56 5.47 -17.82 -0.10 2.47 16 18 N -0.88 -26.35 13.96 55.43 0.77 -25.58 16 19 Si 0.86 22.06 23.99 -169.99 -4.08 17.98 16 20 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 22 H -0.23 -5.71 5.40 56.52 0.31 -5.41 16 23 C 0.11 2.59 4.39 -3.06 -0.01 2.57 16 24 C -0.11 -1.39 9.36 -39.58 -0.37 -1.76 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.10 1.08 7.79 -51.93 -0.40 0.68 16 32 H 0.10 1.08 8.09 -51.93 -0.42 0.66 16 33 H 0.07 0.78 7.48 -51.93 -0.39 0.40 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.41 8.04 -51.93 -0.42 1.00 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.37 6.53 9.10 45.56 0.41 6.94 16 38 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.06 1.47 5.70 -51.93 -0.30 1.18 16 40 H 0.08 2.07 7.62 -51.93 -0.40 1.67 16 41 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -33.85 334.61 -7.58 -41.43 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.36 Total: 7.09 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -3.12 Total: -9.04 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.21 Total: -37.76 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.28 Total: -24.76 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.08 Total: 17.98 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.85 -7.58 -41.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838369.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.532 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds