Wall clock time and date at job start Tue Mar 31 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38248 * 120.00015 * 2 1 4 4 C 1.38221 * 119.99762 * 180.23072 * 3 2 1 5 5 C 1.38254 * 119.99890 * 359.53100 * 4 3 2 6 6 C 1.38209 * 119.99903 * 0.27967 * 5 4 3 7 7 C 1.50701 * 119.99915 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47408 * 89.99829 * 7 6 5 9 9 O 1.21291 * 119.99552 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00377 * 179.97438 * 8 7 6 11 11 C 1.47427 * 125.64741 * 0.03047 * 10 8 7 12 12 C 1.54905 * 104.83338 * 204.08526 * 11 10 8 13 13 C 1.55159 * 101.58129 * 322.99022 * 12 11 10 14 14 O 1.42900 * 110.72116 * 276.95717 * 13 12 11 15 15 C 1.50704 * 110.71905 * 153.86269 * 13 12 11 16 16 H 1.07998 * 119.99910 * 5.09442 * 15 13 12 17 17 C 1.37873 * 120.00059 * 185.09390 * 15 13 12 18 18 N 1.31514 * 120.00170 * 183.77404 * 17 15 13 19 19 Si 1.86803 * 119.99896 * 3.77336 * 17 15 13 20 20 H 1.48501 * 109.47261 * 84.83061 * 19 17 15 21 21 H 1.48503 * 109.47055 * 204.82606 * 19 17 15 22 22 H 1.48497 * 109.47255 * 324.82869 * 19 17 15 23 23 C 1.47021 * 125.65122 * 179.71194 * 10 8 7 24 24 C 1.38209 * 119.99519 * 179.82777 * 2 1 3 25 25 H 1.09002 * 109.47477 * 270.17503 * 1 2 3 26 26 H 1.09006 * 109.46913 * 30.17257 * 1 2 3 27 27 H 1.09002 * 109.47506 * 150.16558 * 1 2 3 28 28 H 1.07999 * 120.00650 * 0.03821 * 3 2 1 29 29 H 1.08001 * 120.00083 * 179.80574 * 4 3 2 30 30 H 1.07996 * 119.99622 * 180.25408 * 5 4 3 31 31 H 1.09001 * 109.46961 * 210.00069 * 7 6 5 32 32 H 1.09002 * 109.46957 * 329.99580 * 7 6 5 33 33 H 1.09003 * 110.36502 * 322.92803 * 11 10 8 34 34 H 1.09002 * 110.36616 * 85.24867 * 11 10 8 35 35 H 1.09005 * 111.00355 * 81.06339 * 12 11 10 36 36 H 1.08995 * 111.00693 * 204.87778 * 12 11 10 37 37 H 0.96695 * 113.99821 * 298.55230 * 14 13 12 38 38 H 0.96998 * 120.00026 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.88369 * 298.40197 * 23 10 8 40 40 H 1.09004 * 109.87738 * 59.56633 * 23 10 8 41 41 H 1.08001 * 120.00321 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0048 5 6 4.2717 -0.0001 0.0002 6 6 3.5806 -1.1970 0.0041 7 6 4.3341 -2.5021 0.0090 8 6 4.5848 -2.9322 1.4313 9 8 4.1900 -2.2466 2.3507 10 7 5.2467 -4.0791 1.6819 11 6 5.7789 -5.0039 0.6645 12 6 5.8650 -6.3747 1.3808 13 6 6.2996 -5.9528 2.8093 14 8 7.7149 -5.7661 2.8728 15 6 5.8520 -6.9718 3.8255 16 1 5.3796 -7.8870 3.5005 17 6 6.0457 -6.7357 5.1700 18 7 5.7232 -7.6560 6.0524 19 14 6.7660 -5.1085 5.7382 20 1 5.6808 -4.1021 5.8595 21 1 7.4213 -5.2913 7.0582 22 1 7.7686 -4.6385 4.7487 23 6 5.5635 -4.6120 3.0150 24 6 2.1980 -1.1970 0.0036 25 1 -0.3634 0.0031 1.0277 26 1 -0.3633 0.8885 -0.5165 27 1 -0.3634 -0.8915 -0.5113 28 1 1.6584 2.1326 0.0006 29 1 4.1205 2.1325 -0.0080 30 1 5.3517 -0.0001 0.0005 31 1 3.7451 -3.2635 -0.5024 32 1 5.2866 -2.3736 -0.5051 33 1 5.1005 -5.0626 -0.1867 34 1 6.7687 -4.6824 0.3403 35 1 4.8933 -6.8684 1.3978 36 1 6.6167 -7.0122 0.9155 37 1 8.2259 -6.5628 2.6748 38 1 5.8591 -7.4897 6.9983 39 1 6.2055 -3.9128 3.5508 40 1 4.6437 -4.7784 3.5758 41 1 1.6580 -2.1323 0.0060 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592838369.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:33 Heat of formation + Delta-G solvation = -81.194070 kcal Electronic energy + Delta-G solvation = -22907.450134 eV Core-core repulsion = 19558.084812 eV Total energy + Delta-G solvation = -3349.365321 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.34233 -40.19861 -38.99244 -36.17719 -34.57135 -34.44136 -32.96212 -31.78790 -30.37168 -28.95800 -27.71840 -26.56244 -24.31124 -23.07008 -21.99276 -21.47176 -20.27494 -19.20518 -18.24566 -17.56727 -17.28764 -16.90484 -16.45943 -16.24631 -16.17829 -15.55223 -15.31592 -14.97705 -14.55342 -14.46998 -14.21647 -14.03322 -13.84831 -13.62880 -13.49279 -13.31322 -13.13304 -12.80528 -12.74886 -12.67908 -12.42056 -12.11765 -12.01115 -11.94919 -11.85469 -11.10900 -10.98202 -10.87724 -10.27908 -9.70183 -9.66717 -9.48627 -8.44899 -6.56327 0.40120 0.49948 1.26767 1.33303 1.53124 1.59299 2.01648 2.28000 2.85900 2.92540 3.46119 3.64812 3.79838 3.84573 3.89089 4.05444 4.22062 4.23735 4.28627 4.38072 4.41409 4.46333 4.57832 4.61232 4.65380 4.79934 4.81291 4.83331 4.97135 4.99066 5.14303 5.18852 5.23328 5.30203 5.39367 5.50921 5.55734 5.65255 5.70084 6.03983 6.14157 6.54428 6.59688 7.12558 7.14876 7.31263 8.69201 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024124 B = 0.003952 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.371109 B = 7084.021784 C = 7324.112327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.132 4.132 4 C -0.124 4.124 5 C -0.130 4.130 6 C -0.077 4.077 7 C -0.084 4.084 8 C 0.516 3.484 9 O -0.593 6.593 10 N -0.616 5.616 11 C 0.102 3.898 12 C -0.139 4.139 13 C 0.212 3.788 14 O -0.577 6.577 15 C -0.543 4.543 16 H 0.056 0.944 17 C 0.046 3.954 18 N -0.929 5.929 19 Si 0.914 3.086 20 H -0.298 1.298 21 H -0.295 1.295 22 H -0.216 1.216 23 C 0.116 3.884 24 C -0.125 4.125 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.382 0.618 38 H 0.268 0.732 39 H 0.035 0.965 40 H 0.046 0.954 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.770 12.986 -19.389 23.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.149 4.149 4 C -0.142 4.142 5 C -0.148 4.148 6 C -0.077 4.077 7 C -0.123 4.123 8 C 0.307 3.693 9 O -0.474 6.474 10 N -0.349 5.349 11 C -0.018 4.018 12 C -0.177 4.177 13 C 0.172 3.828 14 O -0.386 6.386 15 C -0.581 4.581 16 H 0.074 0.926 17 C -0.155 4.155 18 N -0.568 5.568 19 Si 0.741 3.259 20 H -0.225 1.225 21 H -0.222 1.222 22 H -0.139 1.139 23 C -0.007 4.007 24 C -0.144 4.144 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.160 0.840 29 H 0.159 0.841 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.232 0.768 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.186 13.958 -18.624 23.647 hybrid contribution 0.337 -0.252 1.375 1.438 sum -3.849 13.706 -17.249 22.365 Atomic orbital electron populations 1.20822 0.89545 1.03847 1.02607 1.20240 0.97491 0.93028 0.99213 1.21341 0.94473 0.98216 1.00916 1.21398 0.94789 0.98388 0.99647 1.21227 1.00382 0.92461 1.00702 1.19507 0.93963 0.94300 0.99973 1.20698 1.03934 0.96333 0.91360 1.21145 0.76520 0.78866 0.92770 1.90689 1.53161 1.54689 1.48823 1.48806 1.55397 1.22466 1.08270 1.22635 1.00544 0.87768 0.90901 1.23271 1.03089 0.96658 0.94655 1.19808 0.79692 0.89398 0.93935 1.86448 1.18286 1.40319 1.93530 1.21573 1.40619 1.04913 0.91037 0.92591 1.25569 0.94057 0.98650 0.97262 1.70009 1.48785 1.35502 1.02456 0.86460 0.80350 0.81011 0.78081 1.22518 1.22201 1.13886 1.22153 0.97894 0.95326 0.85342 1.21113 0.93670 0.98489 1.01077 0.91399 0.89887 0.90814 0.84032 0.84056 0.85524 0.85232 0.85192 0.86945 0.89355 0.90965 0.87467 0.76832 0.92303 0.94643 0.93601 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 10.01 71.24 0.71 -1.12 16 2 C -0.10 -2.24 5.88 -19.87 -0.12 -2.36 16 3 C -0.13 -2.76 9.70 22.27 0.22 -2.54 16 4 C -0.12 -2.71 10.05 22.27 0.22 -2.48 16 5 C -0.13 -3.18 9.70 22.27 0.22 -2.97 16 6 C -0.08 -1.99 4.37 -19.87 -0.09 -2.07 16 7 C -0.08 -1.94 4.84 29.10 0.14 -1.80 16 8 C 0.52 18.30 7.84 87.66 0.69 18.98 16 9 O -0.59 -27.19 16.36 -3.06 -0.05 -27.24 16 10 N -0.62 -22.21 3.33 -811.77 -2.70 -24.91 16 11 C 0.10 2.63 6.68 86.85 0.58 3.21 16 12 C -0.14 -4.36 6.22 31.99 0.20 -4.16 16 13 C 0.21 9.11 0.68 -10.35 -0.01 9.10 16 14 O -0.58 -23.39 10.47 -148.98 -1.56 -24.96 16 15 C -0.54 -29.11 8.72 25.60 0.22 -28.88 16 16 H 0.06 3.23 8.03 -2.91 -0.02 3.20 16 17 C 0.05 2.64 5.47 84.65 0.46 3.10 16 18 N -0.93 -56.97 13.96 21.45 0.30 -56.67 16 19 Si 0.91 47.02 23.99 68.60 1.65 48.67 16 20 H -0.30 -16.08 7.11 99.48 0.71 -15.37 16 21 H -0.29 -14.97 7.11 99.48 0.71 -14.27 16 22 H -0.22 -10.62 5.40 99.48 0.54 -10.08 16 23 C 0.12 5.34 4.39 86.73 0.38 5.72 16 24 C -0.13 -3.16 9.36 22.27 0.21 -2.95 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.08 1.03 8.09 -2.38 -0.02 1.01 16 27 H 0.07 1.07 8.09 -2.39 -0.02 1.06 16 28 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 31 H 0.13 2.22 7.79 -2.39 -0.02 2.20 16 32 H 0.13 2.22 8.09 -2.39 -0.02 2.20 16 33 H 0.11 1.95 7.48 -2.39 -0.02 1.93 16 34 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.07 2.39 8.04 -2.38 -0.02 2.37 16 36 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.38 12.61 9.10 -74.06 -0.67 11.94 16 38 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 39 H 0.04 1.78 5.70 -2.39 -0.01 1.76 16 40 H 0.05 2.39 7.62 -2.39 -0.02 2.37 16 41 H 0.12 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -77.21 334.61 1.86 -75.34 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.19 Total: 20.97 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 4.04 Total: -11.21 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -2.40 Total: -81.58 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -1.61 Total: -52.19 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.65 Total: 48.67 kcal Total: -77.21 1.86 -75.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838369.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.850 kcal (2) G-P(sol) polarization free energy of solvation -77.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds