Wall clock time and date at job start Tue Mar 31 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38386 * 119.85164 * 2 1 4 4 C 1.37936 * 120.14062 * 179.76116 * 3 2 1 5 5 C 1.39589 * 119.85616 * 0.52869 * 4 3 2 6 6 C 1.47846 * 120.14638 * 179.74842 * 5 4 3 7 7 O 1.21559 * 119.99754 * 229.25077 * 6 5 4 8 8 N 1.34772 * 119.99940 * 49.24851 * 6 5 4 9 9 C 1.47425 * 125.64919 * 355.04409 * 8 6 5 10 10 C 1.54915 * 104.83073 * 155.90816 * 9 8 6 11 11 C 1.55153 * 101.58167 * 37.01090 * 10 9 8 12 12 O 1.42901 * 110.72271 * 82.85944 * 11 10 9 13 13 C 1.50703 * 110.72038 * 205.95598 * 11 10 9 14 14 H 1.07997 * 119.99731 * 357.56250 * 13 11 10 15 15 C 1.37872 * 119.99907 * 177.55630 * 13 11 10 16 16 N 1.31510 * 120.00393 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99755 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46997 * 60.00346 * 17 15 13 19 19 H 1.48501 * 109.47188 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47069 * 299.99982 * 17 15 13 21 21 C 1.47028 * 125.64737 * 175.08712 * 8 6 5 22 22 C 1.39562 * 119.70810 * 359.46969 * 5 4 3 23 23 C 1.50701 * 120.06898 * 180.22973 * 22 5 4 24 24 C 1.37974 * 119.85516 * 0.25502 * 22 5 4 25 25 H 1.08994 * 109.47896 * 269.98187 * 1 2 3 26 26 H 1.09003 * 109.46732 * 29.98770 * 1 2 3 27 27 H 1.09001 * 109.46510 * 149.97927 * 1 2 3 28 28 H 1.08000 * 119.92472 * 0.03551 * 3 2 1 29 29 H 1.08001 * 120.07320 * 180.27629 * 4 3 2 30 30 H 1.08997 * 110.36702 * 37.07310 * 9 8 6 31 31 H 1.08999 * 110.36808 * 274.74496 * 9 8 6 32 32 H 1.09005 * 111.00205 * 278.93486 * 10 9 8 33 33 H 1.08996 * 111.03381 * 155.09678 * 10 9 8 34 34 H 0.96695 * 114.00215 * 180.02562 * 12 11 10 35 35 H 0.96999 * 120.00247 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.88023 * 61.60228 * 21 8 6 37 37 H 1.08998 * 109.88164 * 300.44114 * 21 8 6 38 38 H 1.09009 * 109.47217 * 94.01248 * 23 22 5 39 39 H 1.09000 * 109.46913 * 214.00349 * 23 22 5 40 40 H 1.09000 * 109.47927 * 334.00593 * 23 22 5 41 41 H 1.07999 * 119.92684 * 179.97438 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5752 1.2072 0.0050 5 6 4.2762 0.0001 -0.0012 6 6 5.7547 0.0001 -0.0015 7 8 6.3623 -0.6831 -0.8026 8 7 6.4287 0.7577 0.8863 9 6 5.8249 1.7066 1.8393 10 6 6.8599 1.8302 2.9854 11 6 8.1989 1.7680 2.2040 12 8 8.5371 3.0526 1.6773 13 6 9.3058 1.2462 3.0836 14 1 9.1082 1.0141 4.1196 15 6 10.5706 1.0652 2.5655 16 7 10.8112 1.3482 1.3040 17 14 11.9425 0.4177 3.6556 18 1 11.5716 -0.9236 4.1739 19 1 13.1956 0.3146 2.8656 20 1 12.1509 1.3481 4.7941 21 6 7.8881 0.7752 1.0641 22 6 3.5754 -1.2067 -0.0011 23 6 4.3240 -2.5146 -0.0024 24 6 2.1956 -1.1998 -0.0003 25 1 -0.3635 -0.0003 1.0276 26 1 -0.3633 0.8901 -0.5137 27 1 -0.3632 -0.8898 -0.5142 28 1 1.6522 2.1334 0.0006 29 1 4.1117 2.1446 0.0095 30 1 4.8823 1.3137 2.2202 31 1 5.6687 2.6747 1.3633 32 1 6.7742 0.9952 3.6809 33 1 6.7553 2.7820 3.5061 34 1 9.3659 3.0679 1.1796 35 1 11.7012 1.2211 0.9396 36 1 8.3698 1.1050 0.1436 37 1 8.2407 -0.2205 1.3333 38 1 4.4431 -2.8662 1.0225 39 1 3.7645 -3.2529 -0.5770 40 1 5.3058 -2.3710 -0.4537 41 1 1.6521 -2.1330 -0.0006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842293.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:36 Heat of formation + Delta-G solvation = -67.998300 kcal Electronic energy + Delta-G solvation = -23300.211043 eV Core-core repulsion = 19951.417934 eV Total energy + Delta-G solvation = -3348.793110 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19237 -38.59274 -37.11813 -34.37832 -33.36784 -32.21167 -32.11656 -30.05388 -28.12000 -27.35160 -26.99148 -24.95730 -23.11380 -22.01932 -21.00185 -19.62676 -19.00139 -17.25453 -16.90379 -15.87295 -15.57880 -15.28174 -14.86301 -14.62863 -14.25483 -14.01949 -13.76765 -13.31574 -13.20695 -13.06385 -12.95956 -12.84177 -12.44371 -12.09547 -12.00688 -11.76653 -11.58491 -11.41766 -11.30643 -11.07620 -10.96665 -10.79610 -10.63806 -10.54147 -10.18838 -9.38068 -9.30778 -8.79009 -8.68496 -8.53783 -8.33233 -7.89521 -6.30423 -4.39651 1.07516 1.37846 3.10750 3.21356 3.27235 3.28947 3.56544 3.84103 4.25520 4.69066 4.75969 4.88642 4.90493 4.98976 5.21005 5.28277 5.39864 5.40825 5.52477 5.61613 5.70962 5.74226 5.78239 5.81762 5.92331 5.97746 6.02557 6.15343 6.32056 6.35003 6.48455 6.50602 6.64139 6.74396 6.83532 6.93323 6.97520 7.25128 7.36077 7.71393 7.97796 8.18524 8.62282 8.70014 9.28714 9.38566 10.77140 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028134 B = 0.004121 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.013517 B = 6793.546033 C = 7197.772577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.072 4.072 3 C -0.133 4.133 4 C -0.081 4.081 5 C -0.122 4.122 6 C 0.564 3.436 7 O -0.544 6.544 8 N -0.603 5.603 9 C 0.101 3.899 10 C -0.118 4.118 11 C 0.249 3.751 12 O -0.586 6.586 13 C -0.540 4.540 14 H 0.066 0.934 15 C 0.071 3.929 16 N -0.895 5.895 17 Si 0.904 3.096 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.103 3.897 22 C -0.032 4.032 23 C -0.138 4.138 24 C -0.130 4.130 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.385 0.615 35 H 0.271 0.729 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.981 -1.814 -0.822 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.072 4.072 3 C -0.151 4.151 4 C -0.099 4.099 5 C -0.125 4.125 6 C 0.352 3.648 7 O -0.424 6.424 8 N -0.334 5.334 9 C -0.022 4.022 10 C -0.156 4.156 11 C 0.208 3.792 12 O -0.395 6.395 13 C -0.578 4.578 14 H 0.085 0.915 15 C -0.133 4.133 16 N -0.534 5.534 17 Si 0.731 3.269 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.200 1.200 21 C -0.018 4.018 22 C -0.033 4.033 23 C -0.194 4.194 24 C -0.148 4.148 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.236 0.764 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.115 0.885 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.074 -2.044 -1.143 17.234 hybrid contribution 1.312 -0.458 0.221 1.407 sum -15.762 -2.502 -0.922 15.986 Atomic orbital electron populations 1.20809 0.91154 1.02756 1.02362 1.20021 0.96028 0.93128 0.98070 1.20912 0.93757 0.97598 1.02866 1.21333 0.94240 0.97281 0.97072 1.19886 0.93411 0.93939 1.05303 1.17933 0.86405 0.79750 0.80672 1.90705 1.69691 1.43194 1.38826 1.48751 1.09856 1.39791 1.35036 1.22409 0.96732 0.92409 0.90670 1.22770 0.94713 1.02004 0.96155 1.19476 0.90891 0.80663 0.88132 1.86080 1.46418 1.32380 1.74651 1.21481 0.94051 1.44898 0.97350 0.91533 1.25076 0.98952 0.94065 0.95157 1.69629 1.22930 1.48058 1.12747 0.86452 0.80612 0.79497 0.80306 1.20008 1.21046 1.19965 1.23041 0.75809 1.01892 1.01087 1.19892 0.93338 0.94558 0.95477 1.21124 1.02575 0.93140 1.02559 1.20822 0.93066 0.97671 1.03227 0.91048 0.91482 0.91550 0.85723 0.85345 0.91770 0.91666 0.90514 0.90456 0.76402 0.91848 0.91516 0.91505 0.91189 0.91524 0.88518 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 2 C -0.07 -0.80 5.89 -104.53 -0.62 -1.42 16 3 C -0.13 -1.56 9.68 -39.64 -0.38 -1.94 16 4 C -0.08 -1.14 8.16 -39.19 -0.32 -1.46 16 5 C -0.12 -2.05 5.17 -104.97 -0.54 -2.59 16 6 C 0.56 11.60 6.86 -12.33 -0.08 11.52 16 7 O -0.54 -12.86 15.11 5.31 0.08 -12.78 16 8 N -0.60 -12.59 3.33 -171.62 -0.57 -13.16 16 9 C 0.10 1.80 5.44 -2.53 -0.01 1.79 16 10 C -0.12 -2.35 6.22 -24.58 -0.15 -2.50 16 11 C 0.25 5.98 0.86 -89.94 -0.08 5.90 16 12 O -0.59 -14.65 13.09 -35.23 -0.46 -15.11 16 13 C -0.54 -14.00 8.12 -34.44 -0.28 -14.28 16 14 H 0.07 1.69 7.77 -52.49 -0.41 1.28 16 15 C 0.07 1.83 5.26 -17.82 -0.09 1.74 16 16 N -0.89 -23.72 10.97 55.43 0.61 -23.12 16 17 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 21 C 0.10 2.50 5.40 -3.06 -0.02 2.48 16 22 C -0.03 -0.47 5.91 -104.22 -0.62 -1.09 16 23 C -0.14 -1.98 9.67 36.01 0.35 -1.63 16 24 C -0.13 -1.58 9.35 -39.64 -0.37 -1.95 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 27 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 28 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.13 1.75 6.77 -52.49 -0.36 1.40 16 30 H 0.06 0.99 7.07 -51.93 -0.37 0.63 16 31 H 0.07 1.11 7.56 -51.93 -0.39 0.72 16 32 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.38 9.92 7.17 45.56 0.33 10.25 16 35 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.07 1.77 8.01 -51.93 -0.42 1.36 16 37 H 0.07 1.75 7.82 -51.93 -0.41 1.35 16 38 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 39 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 40 H 0.10 1.69 5.37 -51.93 -0.28 1.42 16 41 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 334.06 15.07 5.03 5.03 Total: -1.00 -29.27 334.06 -8.41 -37.68 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -5.22 Total: 12.10 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -2.86 Total: -5.95 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.04 Total: -36.27 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.38 Total: -27.89 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.27 -8.41 -37.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842293.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.317 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds