Wall clock time and date at job start Tue Mar 31 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38386 * 119.85164 * 2 1 4 4 C 1.37936 * 120.14062 * 179.76116 * 3 2 1 5 5 C 1.39589 * 119.85616 * 0.52869 * 4 3 2 6 6 C 1.47846 * 120.14638 * 179.74842 * 5 4 3 7 7 O 1.21559 * 119.99754 * 229.25077 * 6 5 4 8 8 N 1.34772 * 119.99940 * 49.24851 * 6 5 4 9 9 C 1.47425 * 125.64919 * 355.04409 * 8 6 5 10 10 C 1.54915 * 104.83073 * 155.90816 * 9 8 6 11 11 C 1.55153 * 101.58167 * 37.01090 * 10 9 8 12 12 O 1.42901 * 110.72271 * 82.85944 * 11 10 9 13 13 C 1.50703 * 110.72038 * 205.95598 * 11 10 9 14 14 H 1.07997 * 119.99731 * 357.56250 * 13 11 10 15 15 C 1.37872 * 119.99907 * 177.55630 * 13 11 10 16 16 N 1.31510 * 120.00393 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99755 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46997 * 60.00346 * 17 15 13 19 19 H 1.48501 * 109.47188 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47069 * 299.99982 * 17 15 13 21 21 C 1.47028 * 125.64737 * 175.08712 * 8 6 5 22 22 C 1.39562 * 119.70810 * 359.46969 * 5 4 3 23 23 C 1.50701 * 120.06898 * 180.22973 * 22 5 4 24 24 C 1.37974 * 119.85516 * 0.25502 * 22 5 4 25 25 H 1.08994 * 109.47896 * 269.98187 * 1 2 3 26 26 H 1.09003 * 109.46732 * 29.98770 * 1 2 3 27 27 H 1.09001 * 109.46510 * 149.97927 * 1 2 3 28 28 H 1.08000 * 119.92472 * 0.03551 * 3 2 1 29 29 H 1.08001 * 120.07320 * 180.27629 * 4 3 2 30 30 H 1.08997 * 110.36702 * 37.07310 * 9 8 6 31 31 H 1.08999 * 110.36808 * 274.74496 * 9 8 6 32 32 H 1.09005 * 111.00205 * 278.93486 * 10 9 8 33 33 H 1.08996 * 111.03381 * 155.09678 * 10 9 8 34 34 H 0.96695 * 114.00215 * 180.02562 * 12 11 10 35 35 H 0.96999 * 120.00247 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.88023 * 61.60228 * 21 8 6 37 37 H 1.08998 * 109.88164 * 300.44114 * 21 8 6 38 38 H 1.09009 * 109.47217 * 94.01248 * 23 22 5 39 39 H 1.09000 * 109.46913 * 214.00349 * 23 22 5 40 40 H 1.09000 * 109.47927 * 334.00593 * 23 22 5 41 41 H 1.07999 * 119.92684 * 179.97438 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5752 1.2072 0.0050 5 6 4.2762 0.0001 -0.0012 6 6 5.7547 0.0001 -0.0015 7 8 6.3623 -0.6831 -0.8026 8 7 6.4287 0.7577 0.8863 9 6 5.8249 1.7066 1.8393 10 6 6.8599 1.8302 2.9854 11 6 8.1989 1.7680 2.2040 12 8 8.5371 3.0526 1.6773 13 6 9.3058 1.2462 3.0836 14 1 9.1082 1.0141 4.1196 15 6 10.5706 1.0652 2.5655 16 7 10.8112 1.3482 1.3040 17 14 11.9425 0.4177 3.6556 18 1 11.5716 -0.9236 4.1739 19 1 13.1956 0.3146 2.8656 20 1 12.1509 1.3481 4.7941 21 6 7.8881 0.7752 1.0641 22 6 3.5754 -1.2067 -0.0011 23 6 4.3240 -2.5146 -0.0024 24 6 2.1956 -1.1998 -0.0003 25 1 -0.3635 -0.0003 1.0276 26 1 -0.3633 0.8901 -0.5137 27 1 -0.3632 -0.8898 -0.5142 28 1 1.6522 2.1334 0.0006 29 1 4.1117 2.1446 0.0095 30 1 4.8823 1.3137 2.2202 31 1 5.6687 2.6747 1.3633 32 1 6.7742 0.9952 3.6809 33 1 6.7553 2.7820 3.5061 34 1 9.3659 3.0679 1.1796 35 1 11.7012 1.2211 0.9396 36 1 8.3698 1.1050 0.1436 37 1 8.2407 -0.2205 1.3333 38 1 4.4431 -2.8662 1.0225 39 1 3.7645 -3.2529 -0.5770 40 1 5.3058 -2.3710 -0.4537 41 1 1.6521 -2.1330 -0.0006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842293.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:35 Heat of formation + Delta-G solvation = -86.706484 kcal Electronic energy + Delta-G solvation = -23301.022291 eV Core-core repulsion = 19951.417934 eV Total energy + Delta-G solvation = -3349.604357 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.57197 -39.96365 -38.79477 -36.19440 -34.36120 -34.22682 -33.21510 -31.70222 -29.75436 -28.48063 -28.14450 -26.71853 -24.57891 -23.16128 -22.19530 -21.41890 -20.38673 -19.18462 -18.38823 -17.41406 -17.07900 -16.81339 -16.39215 -15.95768 -15.81410 -15.03275 -14.97667 -14.80769 -14.72134 -14.66635 -14.11574 -13.99831 -13.75967 -13.55053 -13.43756 -13.20747 -12.86283 -12.82485 -12.60175 -12.52943 -12.43446 -12.34680 -12.31012 -12.10303 -11.90654 -11.20691 -10.94429 -10.66669 -10.31790 -9.78433 -9.68364 -9.50224 -8.29127 -6.45970 -0.00491 0.39370 1.41505 1.41906 1.50299 1.62944 2.03830 2.36372 2.72760 2.97051 3.48259 3.75522 3.80337 3.87999 3.97684 4.06697 4.19973 4.31594 4.35525 4.43354 4.55859 4.62801 4.65164 4.67965 4.75497 4.79745 4.92285 4.95719 5.01989 5.07634 5.16050 5.25516 5.30770 5.32844 5.35754 5.46825 5.56303 5.61032 5.71421 5.99525 6.00851 6.55346 6.63062 7.06990 7.25381 7.33005 8.76751 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028134 B = 0.004121 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.013517 B = 6793.546033 C = 7197.772577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.061 4.061 3 C -0.129 4.129 4 C -0.086 4.086 5 C -0.153 4.153 6 C 0.560 3.440 7 O -0.589 6.589 8 N -0.609 5.609 9 C 0.109 3.891 10 C -0.113 4.113 11 C 0.235 3.765 12 O -0.588 6.588 13 C -0.560 4.560 14 H 0.069 0.931 15 C 0.026 3.974 16 N -0.917 5.917 17 Si 0.965 3.035 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.266 1.266 21 C 0.121 3.879 22 C -0.047 4.047 23 C -0.135 4.135 24 C -0.128 4.128 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.157 0.843 29 H 0.129 0.871 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.377 0.623 35 H 0.271 0.729 36 H 0.030 0.970 37 H 0.034 0.966 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.475 -1.590 0.317 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.061 4.061 3 C -0.146 4.146 4 C -0.104 4.104 5 C -0.156 4.156 6 C 0.351 3.649 7 O -0.471 6.471 8 N -0.340 5.340 9 C -0.013 4.013 10 C -0.150 4.150 11 C 0.195 3.805 12 O -0.396 6.396 13 C -0.598 4.598 14 H 0.087 0.913 15 C -0.175 4.175 16 N -0.556 5.556 17 Si 0.790 3.210 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.191 1.191 21 C -0.002 4.002 22 C -0.048 4.048 23 C -0.192 4.192 24 C -0.146 4.146 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.174 0.826 29 H 0.147 0.853 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.227 0.773 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.075 0.925 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.605 -1.803 0.016 20.684 hybrid contribution 2.301 -0.547 -0.181 2.372 sum -18.305 -2.350 -0.165 18.456 Atomic orbital electron populations 1.20905 0.88149 1.04201 1.03696 1.20508 0.98102 0.92328 0.95174 1.21274 0.92594 0.99397 1.01368 1.21405 0.95507 0.96172 0.97341 1.19662 0.90469 0.96014 1.09468 1.18724 0.88350 0.78370 0.79465 1.90667 1.71192 1.44792 1.40483 1.48810 1.08427 1.40749 1.35996 1.22513 0.97091 0.92405 0.89282 1.22769 0.92554 1.03158 0.96553 1.19680 0.92684 0.80002 0.88167 1.86066 1.45952 1.33027 1.74570 1.21827 0.95027 1.45234 0.97759 0.91307 1.25838 1.01164 0.94238 0.96285 1.69744 1.23216 1.48651 1.14030 0.85501 0.77812 0.78945 0.78764 1.19783 1.20938 1.19103 1.22546 0.78169 0.99999 0.99495 1.20048 0.94729 0.93722 0.96285 1.21063 1.00948 0.94222 1.02931 1.21126 0.91706 0.99577 1.02160 0.89542 0.90028 0.90270 0.82563 0.85340 0.88607 0.90568 0.89898 0.88831 0.77274 0.91964 0.95153 0.94792 0.90689 0.88904 0.92464 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 71.24 0.71 -0.41 16 2 C -0.06 -1.08 5.89 -19.81 -0.12 -1.20 16 3 C -0.13 -2.51 9.68 22.23 0.22 -2.29 16 4 C -0.09 -2.27 8.16 22.52 0.18 -2.09 16 5 C -0.15 -5.08 5.17 -20.09 -0.10 -5.19 16 6 C 0.56 24.05 6.86 86.79 0.60 24.65 16 7 O -0.59 -29.83 15.11 -3.90 -0.06 -29.89 16 8 N -0.61 -26.30 3.33 -815.17 -2.71 -29.01 16 9 C 0.11 3.79 5.44 86.86 0.47 4.26 16 10 C -0.11 -4.39 6.22 31.99 0.20 -4.19 16 11 C 0.24 11.59 0.86 -10.35 -0.01 11.58 16 12 O -0.59 -30.17 13.09 -148.98 -1.95 -32.12 16 13 C -0.56 -29.69 8.12 25.60 0.21 -29.48 16 14 H 0.07 3.52 7.77 -2.91 -0.02 3.50 16 15 C 0.03 1.35 5.26 84.65 0.45 1.80 16 16 N -0.92 -50.57 10.97 21.44 0.24 -50.34 16 17 Si 0.96 42.28 29.54 68.60 2.03 44.30 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 C 0.12 6.22 5.40 86.73 0.47 6.69 16 22 C -0.05 -1.35 5.91 -19.61 -0.12 -1.46 16 23 C -0.14 -3.90 9.67 71.24 0.69 -3.21 16 24 C -0.13 -2.67 9.35 22.23 0.21 -2.47 16 25 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 27 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 28 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 29 H 0.13 3.31 6.77 -2.91 -0.02 3.29 16 30 H 0.10 2.76 7.07 -2.39 -0.02 2.74 16 31 H 0.08 2.50 7.56 -2.39 -0.02 2.48 16 32 H 0.08 3.10 8.04 -2.38 -0.02 3.08 16 33 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.38 20.34 7.17 -74.06 -0.53 19.80 16 35 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.03 1.73 8.01 -2.39 -0.02 1.71 16 37 H 0.03 1.91 7.82 -2.39 -0.02 1.89 16 38 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.09 2.08 8.11 -2.39 -0.02 2.06 16 40 H 0.06 2.13 5.37 -2.39 -0.01 2.11 16 41 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -67.63 334.06 2.10 -65.53 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: 0.51 Total: 34.55 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 4.05 Total: -3.02 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -2.48 Total: -79.35 kcal Atomic # 8 Polarization: -60.00 SS G_CDS: -2.01 Total: -62.01 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -67.63 2.10 -65.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842293.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.177 kcal (2) G-P(sol) polarization free energy of solvation -67.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds