Wall clock time and date at job start Tue Mar 31 2020 06:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38390 * 119.85369 * 2 1 4 4 C 1.37930 * 120.14201 * 180.02562 * 3 2 1 5 5 C 1.39595 * 119.85653 * 359.97438 * 4 3 2 6 6 C 1.47848 * 120.14266 * 179.97438 * 5 4 3 7 7 O 1.21558 * 119.99873 * 128.63372 * 6 5 4 8 8 N 1.34774 * 120.00086 * 308.63302 * 6 5 4 9 9 C 1.47422 * 125.64687 * 5.44243 * 8 6 5 10 10 C 1.54914 * 104.83052 * 204.09373 * 9 8 6 11 11 C 1.55157 * 101.58116 * 322.99169 * 10 9 8 12 12 O 1.42908 * 110.71619 * 277.13802 * 11 10 9 13 13 C 1.50693 * 110.71837 * 154.04466 * 11 10 9 14 14 H 1.08000 * 120.00532 * 266.50205 * 13 11 10 15 15 C 1.37883 * 120.00159 * 86.50379 * 13 11 10 16 16 N 1.31508 * 119.99943 * 174.96803 * 15 13 11 17 17 Si 1.86805 * 119.99854 * 354.97043 * 15 13 11 18 18 H 1.48496 * 109.47276 * 87.20965 * 17 15 13 19 19 H 1.48499 * 109.47025 * 207.21058 * 17 15 13 20 20 H 1.48493 * 109.46871 * 327.20858 * 17 15 13 21 21 C 1.47023 * 125.64954 * 185.13557 * 8 6 5 22 22 C 1.39553 * 119.71242 * 0.02562 * 5 4 3 23 23 C 1.50694 * 120.07469 * 180.02562 * 22 5 4 24 24 C 1.37983 * 119.85291 * 0.02562 * 22 5 4 25 25 H 1.09002 * 109.46412 * 269.97627 * 1 2 3 26 26 H 1.08995 * 109.47033 * 29.97096 * 1 2 3 27 27 H 1.08995 * 109.47424 * 149.98067 * 1 2 3 28 28 H 1.08002 * 119.92352 * 0.02616 * 3 2 1 29 29 H 1.08008 * 120.07117 * 179.97438 * 4 3 2 30 30 H 1.08997 * 110.36687 * 322.93020 * 9 8 6 31 31 H 1.09000 * 110.36820 * 85.14940 * 9 8 6 32 32 H 1.08996 * 111.00677 * 81.06737 * 10 9 8 33 33 H 1.09004 * 111.00142 * 204.91634 * 10 9 8 34 34 H 0.96705 * 113.99221 * 174.89556 * 12 11 10 35 35 H 0.97011 * 120.00151 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.88098 * 298.39442 * 21 8 6 37 37 H 1.09006 * 109.87822 * 59.56014 * 21 8 6 38 38 H 1.09000 * 109.47624 * 265.81018 * 23 22 5 39 39 H 1.09004 * 109.47446 * 25.81742 * 23 22 5 40 40 H 1.09001 * 109.47037 * 145.81308 * 23 22 5 41 41 H 1.07995 * 119.92657 * 179.72560 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2003 0.0000 4 6 3.5752 1.2072 -0.0005 5 6 4.2762 0.0000 -0.0005 6 6 5.7547 0.0001 -0.0017 7 8 6.3631 -0.6568 0.8205 8 7 6.4278 0.7284 -0.9143 9 6 5.8238 1.6535 -1.8903 10 6 6.8528 1.7387 -3.0452 11 6 8.1959 1.6909 -2.2699 12 8 8.5443 2.9880 -1.7817 13 6 9.2947 1.1382 -3.1406 14 1 9.5249 0.0834 -3.1152 15 6 10.0063 1.9793 -3.9696 16 7 11.0289 1.5165 -4.6549 17 14 9.5179 3.7761 -4.1194 18 1 10.1925 4.5628 -3.0558 19 1 9.9270 4.2910 -5.4508 20 1 8.0459 3.9029 -3.9707 21 6 7.8866 0.7367 -1.0971 22 6 3.5754 -1.2068 -0.0005 23 6 4.3239 -2.5147 0.0001 24 6 2.1956 -1.1998 -0.0011 25 1 -0.3632 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6523 2.1335 0.0004 29 1 4.1117 2.1446 -0.0010 30 1 4.8768 1.2554 -2.2546 31 1 5.6740 2.6350 -1.4404 32 1 6.7585 0.8851 -3.7163 33 1 6.7502 2.6764 -3.5915 34 1 9.3344 2.9993 -1.2243 35 1 11.5299 2.1084 -5.2380 36 1 8.3720 1.0932 -0.1886 37 1 8.2359 -0.2677 -1.3368 38 1 4.4397 -2.8676 -1.0247 39 1 5.3072 -2.3705 0.4480 40 1 3.7664 -3.2521 0.5774 41 1 1.6521 -2.1330 -0.0056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:38 Heat of formation + Delta-G solvation = -60.832048 kcal Electronic energy + Delta-G solvation = -23289.037736 eV Core-core repulsion = 19940.555378 eV Total energy + Delta-G solvation = -3348.482358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.37864 -38.85549 -37.47726 -34.83498 -33.49067 -32.42176 -32.23903 -30.26675 -28.56476 -27.54261 -27.13504 -25.10737 -23.08622 -22.08450 -21.20398 -19.80946 -19.25748 -17.68087 -17.16654 -16.03522 -15.71131 -15.32881 -15.05305 -14.74099 -14.66926 -14.14255 -13.95849 -13.52018 -13.43362 -13.26343 -13.18870 -12.74779 -12.56936 -12.35640 -12.14173 -12.11675 -11.85345 -11.56078 -11.52284 -11.40792 -11.15083 -11.01327 -10.54307 -10.36391 -10.13216 -9.54594 -9.22601 -8.89835 -8.68784 -8.64415 -8.57784 -8.19119 -6.22638 -4.35399 0.96322 1.27690 2.89625 3.30648 3.41402 3.48066 3.62417 3.68931 4.44146 4.57896 4.65604 4.73621 4.79260 5.02057 5.11821 5.13982 5.18205 5.32148 5.34742 5.43407 5.53345 5.61604 5.65228 5.69927 5.74329 5.82402 5.88583 5.92980 6.04710 6.19387 6.23481 6.40849 6.45321 6.50379 6.55179 6.67311 6.73165 6.83749 7.06570 7.40867 7.88362 8.09261 8.42551 8.60782 8.78819 9.37931 10.86406 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026831 B = 0.004270 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.315727 B = 6556.497889 C = 7049.680350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.070 4.070 3 C -0.133 4.133 4 C -0.080 4.080 5 C -0.125 4.125 6 C 0.570 3.430 7 O -0.544 6.544 8 N -0.602 5.602 9 C 0.097 3.903 10 C -0.123 4.123 11 C 0.219 3.781 12 O -0.565 6.565 13 C -0.554 4.554 14 H 0.080 0.920 15 C 0.076 3.924 16 N -0.887 5.887 17 Si 0.941 3.059 18 H -0.290 1.290 19 H -0.323 1.323 20 H -0.264 1.264 21 C 0.093 3.907 22 C -0.031 4.031 23 C -0.137 4.137 24 C -0.129 4.129 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.373 0.627 35 H 0.267 0.733 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.003 -1.197 7.348 20.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.070 4.070 3 C -0.151 4.151 4 C -0.098 4.098 5 C -0.128 4.128 6 C 0.358 3.642 7 O -0.423 6.423 8 N -0.334 5.334 9 C -0.026 4.026 10 C -0.161 4.161 11 C 0.179 3.821 12 O -0.373 6.373 13 C -0.591 4.591 14 H 0.098 0.902 15 C -0.129 4.129 16 N -0.522 5.522 17 Si 0.776 3.224 18 H -0.217 1.217 19 H -0.254 1.254 20 H -0.190 1.190 21 C -0.029 4.029 22 C -0.032 4.032 23 C -0.193 4.193 24 C -0.147 4.147 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.221 0.779 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.080 -1.411 7.370 20.503 hybrid contribution 0.368 0.800 0.126 0.890 sum -18.712 -0.611 7.496 20.167 Atomic orbital electron populations 1.20821 0.91064 1.02900 1.02397 1.20043 0.96113 0.93097 0.97729 1.20921 0.93735 0.97672 1.02752 1.21293 0.94288 0.97131 0.97131 1.19787 0.93033 0.94050 1.05914 1.17947 0.86608 0.79126 0.80489 1.90717 1.69694 1.43732 1.38164 1.48545 1.08934 1.42218 1.33696 1.22519 0.97236 0.92595 0.90208 1.23174 0.93485 1.03318 0.96168 1.20103 0.93508 0.79321 0.89177 1.86144 1.49707 1.32258 1.69217 1.21185 1.16835 0.97085 1.23982 0.90166 1.25100 0.93587 1.00317 0.93904 1.69961 1.18076 1.36993 1.27178 0.85872 0.79609 0.82829 0.74140 1.21691 1.25356 1.19033 1.22901 0.78262 1.02231 0.99537 1.19882 0.93390 0.94482 0.95423 1.21105 1.02332 0.93203 1.02674 1.20840 0.93044 0.97752 1.03069 0.91037 0.91379 0.91439 0.85651 0.85415 0.91429 0.91584 0.89642 0.89654 0.77925 0.92344 0.92067 0.90686 0.91030 0.88806 0.91370 0.85639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.07 -0.72 5.89 -104.53 -0.62 -1.33 16 3 C -0.13 -1.44 9.68 -39.64 -0.38 -1.82 16 4 C -0.08 -1.04 8.21 -39.19 -0.32 -1.36 16 5 C -0.12 -1.91 5.12 -104.97 -0.54 -2.45 16 6 C 0.57 10.47 6.80 -12.33 -0.08 10.39 16 7 O -0.54 -11.47 15.23 5.32 0.08 -11.39 16 8 N -0.60 -11.11 3.33 -171.63 -0.57 -11.68 16 9 C 0.10 1.61 5.50 -2.53 -0.01 1.59 16 10 C -0.12 -2.40 5.82 -24.58 -0.14 -2.54 16 11 C 0.22 4.75 0.68 -89.94 -0.06 4.68 16 12 O -0.57 -11.86 8.82 -35.23 -0.31 -12.17 16 13 C -0.55 -14.46 8.82 -34.44 -0.30 -14.76 16 14 H 0.08 2.30 7.79 -52.49 -0.41 1.89 16 15 C 0.08 2.07 5.46 -17.82 -0.10 1.98 16 16 N -0.89 -25.96 13.96 55.43 0.77 -25.19 16 17 Si 0.94 22.48 24.91 -169.99 -4.23 18.24 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.32 -7.94 7.11 56.52 0.40 -7.54 16 20 H -0.26 -6.05 5.00 56.52 0.28 -5.77 16 21 C 0.09 1.89 6.23 -3.06 -0.02 1.87 16 22 C -0.03 -0.42 5.91 -104.23 -0.62 -1.04 16 23 C -0.14 -1.79 9.67 36.00 0.35 -1.45 16 24 C -0.13 -1.45 9.35 -39.64 -0.37 -1.82 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 28 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.13 1.57 6.98 -52.48 -0.37 1.20 16 30 H 0.07 0.99 7.12 -51.93 -0.37 0.62 16 31 H 0.07 1.03 7.65 -51.93 -0.40 0.63 16 32 H 0.09 1.67 8.04 -51.93 -0.42 1.26 16 33 H 0.09 1.68 6.06 -51.93 -0.31 1.37 16 34 H 0.37 6.97 9.03 45.56 0.41 7.38 16 35 H 0.27 7.38 8.31 -40.81 -0.34 7.04 16 36 H 0.06 1.22 8.05 -51.93 -0.42 0.81 16 37 H 0.07 1.63 7.65 -51.93 -0.40 1.23 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.49 5.44 -51.93 -0.28 1.21 16 40 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 41 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 327.41 15.07 4.93 4.93 Total: -1.00 -31.41 327.41 -7.35 -38.76 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.17 Total: 6.99 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -2.86 Total: -8.51 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.20 Total: -36.87 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.23 Total: -23.55 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.23 Total: 18.24 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.41 -7.35 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.073 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds