Wall clock time and date at job start Tue Mar 31 2020 06:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38390 * 119.85369 * 2 1 4 4 C 1.37930 * 120.14201 * 180.02562 * 3 2 1 5 5 C 1.39595 * 119.85653 * 359.97438 * 4 3 2 6 6 C 1.47848 * 120.14266 * 179.97438 * 5 4 3 7 7 O 1.21558 * 119.99873 * 128.63372 * 6 5 4 8 8 N 1.34774 * 120.00086 * 308.63302 * 6 5 4 9 9 C 1.47422 * 125.64687 * 5.44243 * 8 6 5 10 10 C 1.54914 * 104.83052 * 204.09373 * 9 8 6 11 11 C 1.55157 * 101.58116 * 322.99169 * 10 9 8 12 12 O 1.42908 * 110.71619 * 277.13802 * 11 10 9 13 13 C 1.50693 * 110.71837 * 154.04466 * 11 10 9 14 14 H 1.08000 * 120.00532 * 266.50205 * 13 11 10 15 15 C 1.37883 * 120.00159 * 86.50379 * 13 11 10 16 16 N 1.31508 * 119.99943 * 174.96803 * 15 13 11 17 17 Si 1.86805 * 119.99854 * 354.97043 * 15 13 11 18 18 H 1.48496 * 109.47276 * 87.20965 * 17 15 13 19 19 H 1.48499 * 109.47025 * 207.21058 * 17 15 13 20 20 H 1.48493 * 109.46871 * 327.20858 * 17 15 13 21 21 C 1.47023 * 125.64954 * 185.13557 * 8 6 5 22 22 C 1.39553 * 119.71242 * 0.02562 * 5 4 3 23 23 C 1.50694 * 120.07469 * 180.02562 * 22 5 4 24 24 C 1.37983 * 119.85291 * 0.02562 * 22 5 4 25 25 H 1.09002 * 109.46412 * 269.97627 * 1 2 3 26 26 H 1.08995 * 109.47033 * 29.97096 * 1 2 3 27 27 H 1.08995 * 109.47424 * 149.98067 * 1 2 3 28 28 H 1.08002 * 119.92352 * 0.02616 * 3 2 1 29 29 H 1.08008 * 120.07117 * 179.97438 * 4 3 2 30 30 H 1.08997 * 110.36687 * 322.93020 * 9 8 6 31 31 H 1.09000 * 110.36820 * 85.14940 * 9 8 6 32 32 H 1.08996 * 111.00677 * 81.06737 * 10 9 8 33 33 H 1.09004 * 111.00142 * 204.91634 * 10 9 8 34 34 H 0.96705 * 113.99221 * 174.89556 * 12 11 10 35 35 H 0.97011 * 120.00151 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.88098 * 298.39442 * 21 8 6 37 37 H 1.09006 * 109.87822 * 59.56014 * 21 8 6 38 38 H 1.09000 * 109.47624 * 265.81018 * 23 22 5 39 39 H 1.09004 * 109.47446 * 25.81742 * 23 22 5 40 40 H 1.09001 * 109.47037 * 145.81308 * 23 22 5 41 41 H 1.07995 * 119.92657 * 179.72560 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2003 0.0000 4 6 3.5752 1.2072 -0.0005 5 6 4.2762 0.0000 -0.0005 6 6 5.7547 0.0001 -0.0017 7 8 6.3631 -0.6568 0.8205 8 7 6.4278 0.7284 -0.9143 9 6 5.8238 1.6535 -1.8903 10 6 6.8528 1.7387 -3.0452 11 6 8.1959 1.6909 -2.2699 12 8 8.5443 2.9880 -1.7817 13 6 9.2947 1.1382 -3.1406 14 1 9.5249 0.0834 -3.1152 15 6 10.0063 1.9793 -3.9696 16 7 11.0289 1.5165 -4.6549 17 14 9.5179 3.7761 -4.1194 18 1 10.1925 4.5628 -3.0558 19 1 9.9270 4.2910 -5.4508 20 1 8.0459 3.9029 -3.9707 21 6 7.8866 0.7367 -1.0971 22 6 3.5754 -1.2068 -0.0005 23 6 4.3239 -2.5147 0.0001 24 6 2.1956 -1.1998 -0.0011 25 1 -0.3632 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6523 2.1335 0.0004 29 1 4.1117 2.1446 -0.0010 30 1 4.8768 1.2554 -2.2546 31 1 5.6740 2.6350 -1.4404 32 1 6.7585 0.8851 -3.7163 33 1 6.7502 2.6764 -3.5915 34 1 9.3344 2.9993 -1.2243 35 1 11.5299 2.1084 -5.2380 36 1 8.3720 1.0932 -0.1886 37 1 8.2359 -0.2677 -1.3368 38 1 4.4397 -2.8676 -1.0247 39 1 5.3072 -2.3705 0.4480 40 1 3.7664 -3.2521 0.5774 41 1 1.6521 -2.1330 -0.0056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:38 Heat of formation + Delta-G solvation = -82.293942 kcal Electronic energy + Delta-G solvation = -23289.968393 eV Core-core repulsion = 19940.555378 eV Total energy + Delta-G solvation = -3349.413015 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.64106 -40.10797 -38.95740 -36.44273 -34.48007 -34.38317 -33.25053 -31.80546 -30.10039 -28.57429 -28.16024 -26.78920 -24.44458 -23.14918 -22.32357 -21.46924 -20.51107 -19.55814 -18.47925 -17.35817 -17.09779 -16.88253 -16.66629 -16.10659 -15.87613 -15.26825 -15.09537 -14.86925 -14.71171 -14.59055 -14.12679 -14.07642 -14.00684 -13.84290 -13.45744 -13.27362 -13.16472 -12.85763 -12.78077 -12.53551 -12.44945 -12.32155 -12.25645 -11.91725 -11.82325 -11.22778 -10.94732 -10.66104 -10.43176 -9.80064 -9.73193 -9.52491 -8.35788 -6.51731 -0.00652 0.39039 1.51388 1.52529 1.56857 1.72520 1.95204 2.43763 2.71696 2.95966 3.36030 3.53552 3.77455 3.81451 3.90189 3.96341 4.08297 4.24886 4.34668 4.35878 4.43213 4.55602 4.61388 4.67272 4.73394 4.74432 4.78467 4.90520 4.95078 5.00953 5.10040 5.15175 5.21993 5.29271 5.34421 5.40035 5.48567 5.54188 5.60940 5.98575 6.02183 6.46252 6.55611 6.92012 7.00244 7.26837 8.77519 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026831 B = 0.004270 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.315727 B = 6556.497889 C = 7049.680350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.062 4.062 3 C -0.130 4.130 4 C -0.084 4.084 5 C -0.154 4.154 6 C 0.568 3.432 7 O -0.582 6.582 8 N -0.606 5.606 9 C 0.108 3.892 10 C -0.122 4.122 11 C 0.222 3.778 12 O -0.561 6.561 13 C -0.554 4.554 14 H 0.036 0.964 15 C 0.027 3.973 16 N -0.938 5.938 17 Si 1.002 2.998 18 H -0.281 1.281 19 H -0.333 1.333 20 H -0.243 1.243 21 C 0.100 3.900 22 C -0.048 4.048 23 C -0.134 4.134 24 C -0.130 4.130 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.156 0.844 29 H 0.133 0.867 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.382 0.618 35 H 0.268 0.732 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.175 0.568 7.934 24.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.062 4.062 3 C -0.148 4.148 4 C -0.102 4.102 5 C -0.157 4.157 6 C 0.359 3.641 7 O -0.464 6.464 8 N -0.337 5.337 9 C -0.013 4.013 10 C -0.160 4.160 11 C 0.181 3.819 12 O -0.370 6.370 13 C -0.591 4.591 14 H 0.055 0.945 15 C -0.173 4.173 16 N -0.575 5.575 17 Si 0.834 3.166 18 H -0.208 1.208 19 H -0.264 1.264 20 H -0.168 1.168 21 C -0.023 4.023 22 C -0.048 4.048 23 C -0.191 4.191 24 C -0.148 4.148 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.173 0.827 29 H 0.151 0.849 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.232 0.768 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.110 0.890 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -23.281 0.355 7.972 24.611 hybrid contribution 1.630 0.128 -0.006 1.635 sum -21.651 0.484 7.967 23.075 Atomic orbital electron populations 1.20907 0.88366 1.04245 1.03552 1.20499 0.98020 0.92441 0.95227 1.21280 0.92841 0.99270 1.01381 1.21406 0.95372 0.96285 0.97184 1.19646 0.90694 0.95855 1.09527 1.18571 0.88154 0.77890 0.79497 1.90687 1.70937 1.45083 1.39670 1.48581 1.07842 1.42929 1.34346 1.22553 0.96994 0.93281 0.88515 1.23084 0.92750 1.03296 0.96911 1.19905 0.93166 0.79720 0.89087 1.86097 1.50345 1.31224 1.69315 1.21390 1.18005 0.95258 1.24466 0.94533 1.25913 0.93320 1.04594 0.93522 1.70089 1.19888 1.38697 1.28841 0.84884 0.80467 0.77628 0.73657 1.20796 1.26440 1.16757 1.22570 0.80244 1.00442 0.99058 1.20039 0.94654 0.93846 0.96295 1.21048 1.00923 0.94217 1.02890 1.21125 0.91903 0.99494 1.02230 0.89782 0.89960 0.90302 0.82676 0.84905 0.88940 0.89603 0.90463 0.89040 0.76807 0.92284 0.92036 0.93355 0.90806 0.92254 0.89012 0.83220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 71.24 0.71 -0.33 16 2 C -0.06 -1.01 5.89 -19.80 -0.12 -1.12 16 3 C -0.13 -2.27 9.68 22.23 0.22 -2.05 16 4 C -0.08 -1.95 8.21 22.52 0.18 -1.76 16 5 C -0.15 -4.54 5.12 -20.09 -0.10 -4.65 16 6 C 0.57 21.08 6.80 86.79 0.59 21.67 16 7 O -0.58 -25.57 15.23 -3.90 -0.06 -25.63 16 8 N -0.61 -22.21 3.33 -815.18 -2.71 -24.92 16 9 C 0.11 3.34 5.50 86.86 0.48 3.81 16 10 C -0.12 -4.58 5.82 31.99 0.19 -4.39 16 11 C 0.22 9.58 0.68 -10.35 -0.01 9.58 16 12 O -0.56 -22.52 8.82 -148.98 -1.31 -23.83 16 13 C -0.55 -29.91 8.82 25.60 0.23 -29.69 16 14 H 0.04 2.24 7.79 -2.91 -0.02 2.22 16 15 C 0.03 1.47 5.46 84.66 0.46 1.93 16 16 N -0.94 -56.78 13.96 21.45 0.30 -56.48 16 17 Si 1.00 45.85 24.91 68.60 1.71 47.56 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.33 -15.74 7.11 99.48 0.71 -15.03 16 20 H -0.24 -10.17 5.00 99.48 0.50 -9.67 16 21 C 0.10 4.19 6.23 86.73 0.54 4.73 16 22 C -0.05 -1.24 5.91 -19.61 -0.12 -1.36 16 23 C -0.13 -3.51 9.67 71.23 0.69 -2.83 16 24 C -0.13 -2.50 9.35 22.23 0.21 -2.29 16 25 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 27 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 28 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 29 H 0.13 2.86 6.98 -2.91 -0.02 2.84 16 30 H 0.09 2.44 7.12 -2.39 -0.02 2.42 16 31 H 0.09 2.36 7.65 -2.39 -0.02 2.34 16 32 H 0.08 3.00 8.04 -2.39 -0.02 2.98 16 33 H 0.09 3.33 6.06 -2.38 -0.01 3.31 16 34 H 0.38 13.79 9.03 -74.05 -0.67 13.12 16 35 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 36 H 0.06 2.53 8.05 -2.39 -0.02 2.51 16 37 H 0.05 2.25 7.65 -2.38 -0.02 2.23 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.06 1.98 5.44 -2.38 -0.01 1.97 16 40 H 0.09 1.86 8.11 -2.39 -0.02 1.84 16 41 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -71.09 327.41 2.24 -68.85 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.17 Total: 23.21 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 4.15 Total: -8.75 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -2.41 Total: -81.40 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: -1.37 Total: -49.46 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.71 Total: 47.56 kcal Total: -71.09 2.24 -68.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.445 kcal (2) G-P(sol) polarization free energy of solvation -71.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds