Wall clock time and date at job start Tue Mar 31 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38378 * 119.93019 * 2 1 4 4 C 1.38335 * 120.29083 * 180.27238 * 3 2 1 5 5 C 1.37978 * 120.14848 * 359.72899 * 4 3 2 6 6 C 1.39561 * 119.84735 * 359.97438 * 5 4 3 7 7 C 1.47853 * 120.14082 * 180.02562 * 6 5 4 8 8 O 1.21554 * 119.99924 * 131.91945 * 7 6 5 9 9 N 1.34777 * 120.00005 * 311.91991 * 7 6 5 10 10 C 1.47030 * 125.64815 * 4.91808 * 9 7 6 11 11 C 1.54318 * 107.26941 * 181.02339 * 10 9 7 12 12 C 1.55157 * 102.94324 * 22.19990 * 11 10 9 13 13 O 1.42899 * 111.00763 * 82.56936 * 12 11 10 14 14 C 1.50705 * 111.00355 * 206.38570 * 12 11 10 15 15 H 1.07998 * 119.99941 * 359.97438 * 14 12 11 16 16 C 1.37874 * 119.99819 * 179.97438 * 14 12 11 17 17 N 1.31513 * 120.00424 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99821 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47111 * 89.99856 * 18 16 14 20 20 H 1.48496 * 109.47142 * 209.99790 * 18 16 14 21 21 H 1.48501 * 109.46959 * 329.99933 * 18 16 14 22 22 C 1.47423 * 125.64786 * 184.61761 * 9 7 6 23 23 C 1.37940 * 119.92421 * 179.72133 * 2 1 3 24 24 C 1.50696 * 120.07201 * 0.02562 * 23 2 1 25 25 H 1.08997 * 109.47502 * 270.27767 * 1 2 3 26 26 H 1.09004 * 109.46460 * 30.27750 * 1 2 3 27 27 H 1.08999 * 109.46992 * 150.26996 * 1 2 3 28 28 H 1.07996 * 119.85676 * 359.97438 * 3 2 1 29 29 H 1.08000 * 119.92873 * 179.70298 * 4 3 2 30 30 H 1.08000 * 120.07514 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.88151 * 300.44744 * 10 9 7 32 32 H 1.09001 * 109.87690 * 61.45716 * 10 9 7 33 33 H 1.09004 * 110.71872 * 140.55758 * 11 10 9 34 34 H 1.09000 * 110.72194 * 263.83180 * 11 10 9 35 35 H 0.96701 * 113.99665 * 180.02562 * 13 12 11 36 36 H 0.96994 * 120.00207 * 180.02562 * 17 16 14 37 37 H 1.08998 * 110.36309 * 274.74334 * 22 9 7 38 38 H 1.08995 * 110.36993 * 37.06624 * 22 9 7 39 39 H 1.08999 * 109.47104 * 266.21863 * 24 23 2 40 40 H 1.08999 * 109.47733 * 26.21913 * 24 23 2 41 41 H 1.09003 * 109.47287 * 146.22039 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1992 0.0000 4 6 3.5808 1.2079 -0.0057 5 6 4.2813 0.0192 -0.0057 6 6 3.5910 -1.1938 0.0005 7 6 4.3351 -2.4714 0.0010 8 8 4.0365 -3.3483 0.7880 9 7 5.3445 -2.6637 -0.8711 10 6 5.8755 -1.6577 -1.8027 11 6 7.0000 -2.3338 -2.6149 12 6 6.6595 -3.8425 -2.4908 13 8 5.6672 -4.2239 -3.4458 14 6 7.8977 -4.6894 -2.6352 15 1 8.8562 -4.2205 -2.8018 16 6 7.8068 -6.0627 -2.5545 17 7 6.6397 -6.6337 -2.3511 18 14 9.3415 -7.1125 -2.7341 19 1 9.9561 -7.3232 -1.3988 20 1 8.9767 -8.4256 -3.3239 21 1 10.3115 -6.4231 -3.6224 22 6 6.1033 -3.9157 -1.0445 23 6 2.1952 -1.1955 0.0058 24 6 1.4416 -2.5005 0.0116 25 1 -0.3634 0.0050 1.0276 26 1 -0.3632 0.8875 -0.5182 27 1 -0.3633 -0.8924 -0.5096 28 1 1.6540 2.1325 -0.0004 29 1 4.1137 2.1473 -0.0105 30 1 5.3612 0.0274 -0.0106 31 1 5.0853 -1.3200 -2.4733 32 1 6.2755 -0.8108 -1.2451 33 1 6.9679 -2.0157 -3.6570 34 1 7.9746 -2.1210 -2.1755 35 1 5.4217 -5.1584 -3.4060 36 1 6.5758 -7.5999 -2.2940 37 1 6.9195 -3.9675 -0.3239 38 1 5.4444 -4.7770 -0.9351 39 1 1.3182 -2.8443 1.0386 40 1 0.4617 -2.3563 -0.4435 41 1 1.9998 -3.2450 -0.5561 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:45 Heat of formation + Delta-G solvation = -63.486482 kcal Electronic energy + Delta-G solvation = -23460.450285 eV Core-core repulsion = 20111.852822 eV Total energy + Delta-G solvation = -3348.597463 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19835 -38.59217 -37.02761 -34.39505 -33.33599 -32.16581 -32.08268 -30.11587 -28.18905 -27.40398 -26.42858 -25.25084 -23.47193 -21.85921 -20.77581 -19.65595 -18.84976 -17.24155 -16.66861 -15.98206 -15.86364 -15.30335 -15.00112 -14.55596 -14.40184 -14.14667 -13.63970 -13.23605 -13.06464 -12.92563 -12.84504 -12.65257 -12.57261 -12.10083 -11.78549 -11.74383 -11.60240 -11.47360 -11.30366 -11.06245 -10.91040 -10.70996 -10.55940 -10.50651 -10.19306 -9.47329 -9.32427 -8.72131 -8.70116 -8.54476 -8.37680 -7.77897 -6.30935 -4.40486 1.12478 1.37743 3.14387 3.19472 3.27168 3.29707 3.57954 3.90052 4.24665 4.74413 4.81351 4.88215 4.96882 4.97523 5.13926 5.30158 5.41864 5.47108 5.55355 5.58504 5.71007 5.80242 5.84079 5.89804 5.92957 6.02127 6.07192 6.17159 6.35290 6.41166 6.45395 6.49591 6.64568 6.71107 6.83879 6.94721 7.00161 7.23937 7.31967 7.72499 7.97419 8.20300 8.62336 8.71625 9.29455 9.44497 10.76469 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030004 B = 0.004205 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.995718 B = 6656.516367 C = 7057.749848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.097 4.097 3 C -0.105 4.105 4 C -0.129 4.129 5 C -0.094 4.094 6 C -0.111 4.111 7 C 0.564 3.436 8 O -0.544 6.544 9 N -0.601 5.601 10 C 0.104 3.896 11 C -0.119 4.119 12 C 0.250 3.750 13 O -0.583 6.583 14 C -0.538 4.538 15 H 0.068 0.932 16 C 0.071 3.929 17 N -0.895 5.895 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.094 3.906 23 C -0.037 4.037 24 C -0.118 4.118 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.386 0.614 36 H 0.271 0.729 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.967 13.619 2.943 16.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.123 4.123 4 C -0.147 4.147 5 C -0.113 4.113 6 C -0.114 4.114 7 C 0.352 3.648 8 O -0.423 6.423 9 N -0.333 5.333 10 C -0.019 4.019 11 C -0.157 4.157 12 C 0.209 3.791 13 O -0.394 6.394 14 C -0.577 4.577 15 H 0.086 0.914 16 C -0.132 4.132 17 N -0.535 5.535 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.028 4.028 23 C -0.038 4.038 24 C -0.174 4.174 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.238 0.762 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.219 13.591 3.255 16.213 hybrid contribution 0.900 -1.103 0.145 1.431 sum -7.319 12.488 3.400 14.868 Atomic orbital electron populations 1.20846 0.91049 1.02892 1.02343 1.19677 0.96120 0.92307 1.01596 1.21093 0.94257 0.97257 0.99710 1.21003 0.94193 0.97749 1.01748 1.21370 1.00173 0.91456 0.98280 1.19935 0.93629 0.93711 1.04161 1.17902 0.79514 0.86687 0.80703 1.90752 1.67598 1.44681 1.39253 1.48677 1.32909 1.15620 1.36111 1.22131 0.97033 0.91065 0.91706 1.22650 0.96588 0.96980 0.99487 1.19621 0.86680 0.89391 0.83396 1.86069 1.60762 1.33207 1.59333 1.21510 0.93896 0.91368 1.50886 0.91430 1.25079 0.96766 0.98080 0.93265 1.69562 1.23616 1.11476 1.48813 0.86383 0.82523 0.79427 0.78469 1.20383 1.20957 1.19654 1.23356 0.94430 0.84545 1.00444 1.19755 0.91953 0.95518 0.96579 1.20906 0.99331 0.93923 1.03250 0.91183 0.91666 0.90938 0.86006 0.85726 0.85348 0.92090 0.92562 0.90634 0.90430 0.76195 0.91849 0.92058 0.89987 0.90334 0.91416 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.59 36.01 0.35 -0.72 16 2 C -0.10 -1.21 5.87 -104.68 -0.61 -1.83 16 3 C -0.10 -1.18 9.69 -39.49 -0.38 -1.56 16 4 C -0.13 -1.50 10.03 -39.64 -0.40 -1.90 16 5 C -0.09 -1.34 8.53 -39.18 -0.33 -1.68 16 6 C -0.11 -1.91 5.40 -104.97 -0.57 -2.47 16 7 C 0.56 11.77 6.51 -12.33 -0.08 11.69 16 8 O -0.54 -12.98 15.98 5.32 0.09 -12.90 16 9 N -0.60 -12.67 3.32 -171.49 -0.57 -13.24 16 10 C 0.10 1.86 5.67 -3.06 -0.02 1.85 16 11 C -0.12 -2.36 6.12 -24.90 -0.15 -2.51 16 12 C 0.25 6.04 0.89 -89.50 -0.08 5.96 16 13 O -0.58 -15.01 13.19 -35.23 -0.46 -15.48 16 14 C -0.54 -13.90 8.25 -34.44 -0.28 -14.18 16 15 H 0.07 1.70 7.76 -52.49 -0.41 1.29 16 16 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 17 N -0.90 -23.79 10.72 55.43 0.59 -23.19 16 18 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 C 0.09 2.26 5.63 -2.41 -0.01 2.24 16 23 C -0.04 -0.57 5.91 -104.23 -0.62 -1.19 16 24 C -0.12 -1.77 8.56 36.00 0.31 -1.46 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 27 H 0.07 0.66 5.90 -51.93 -0.31 0.35 16 28 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.13 1.70 6.00 -52.49 -0.31 1.38 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.84 6.01 -51.93 -0.31 0.53 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.08 1.43 8.01 -51.93 -0.42 1.01 16 35 H 0.39 10.27 6.93 45.56 0.32 10.59 16 36 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.06 1.51 8.04 -51.93 -0.42 1.09 16 38 H 0.08 2.22 7.69 -51.93 -0.40 1.82 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 0.81 5.80 -51.93 -0.30 0.51 16 41 H 0.07 1.28 6.93 -51.93 -0.36 0.92 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -29.62 330.18 -8.39 -38.01 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -5.01 Total: 12.65 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.98 Total: -6.02 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.02 Total: -36.43 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.38 Total: -28.37 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.62 -8.39 -38.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.474 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds