Wall clock time and date at job start Tue Mar 31 2020 06:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38378 * 119.93019 * 2 1 4 4 C 1.38335 * 120.29083 * 180.27238 * 3 2 1 5 5 C 1.37978 * 120.14848 * 359.72899 * 4 3 2 6 6 C 1.39561 * 119.84735 * 359.97438 * 5 4 3 7 7 C 1.47853 * 120.14082 * 180.02562 * 6 5 4 8 8 O 1.21554 * 119.99924 * 131.91945 * 7 6 5 9 9 N 1.34777 * 120.00005 * 311.91991 * 7 6 5 10 10 C 1.47030 * 125.64815 * 4.91808 * 9 7 6 11 11 C 1.54318 * 107.26941 * 181.02339 * 10 9 7 12 12 C 1.55157 * 102.94324 * 22.19990 * 11 10 9 13 13 O 1.42899 * 111.00763 * 82.56936 * 12 11 10 14 14 C 1.50705 * 111.00355 * 206.38570 * 12 11 10 15 15 H 1.07998 * 119.99941 * 359.97438 * 14 12 11 16 16 C 1.37874 * 119.99819 * 179.97438 * 14 12 11 17 17 N 1.31513 * 120.00424 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99821 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47111 * 89.99856 * 18 16 14 20 20 H 1.48496 * 109.47142 * 209.99790 * 18 16 14 21 21 H 1.48501 * 109.46959 * 329.99933 * 18 16 14 22 22 C 1.47423 * 125.64786 * 184.61761 * 9 7 6 23 23 C 1.37940 * 119.92421 * 179.72133 * 2 1 3 24 24 C 1.50696 * 120.07201 * 0.02562 * 23 2 1 25 25 H 1.08997 * 109.47502 * 270.27767 * 1 2 3 26 26 H 1.09004 * 109.46460 * 30.27750 * 1 2 3 27 27 H 1.08999 * 109.46992 * 150.26996 * 1 2 3 28 28 H 1.07996 * 119.85676 * 359.97438 * 3 2 1 29 29 H 1.08000 * 119.92873 * 179.70298 * 4 3 2 30 30 H 1.08000 * 120.07514 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.88151 * 300.44744 * 10 9 7 32 32 H 1.09001 * 109.87690 * 61.45716 * 10 9 7 33 33 H 1.09004 * 110.71872 * 140.55758 * 11 10 9 34 34 H 1.09000 * 110.72194 * 263.83180 * 11 10 9 35 35 H 0.96701 * 113.99665 * 180.02562 * 13 12 11 36 36 H 0.96994 * 120.00207 * 180.02562 * 17 16 14 37 37 H 1.08998 * 110.36309 * 274.74334 * 22 9 7 38 38 H 1.08995 * 110.36993 * 37.06624 * 22 9 7 39 39 H 1.08999 * 109.47104 * 266.21863 * 24 23 2 40 40 H 1.08999 * 109.47733 * 26.21913 * 24 23 2 41 41 H 1.09003 * 109.47287 * 146.22039 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1992 0.0000 4 6 3.5808 1.2079 -0.0057 5 6 4.2813 0.0192 -0.0057 6 6 3.5910 -1.1938 0.0005 7 6 4.3351 -2.4714 0.0010 8 8 4.0365 -3.3483 0.7880 9 7 5.3445 -2.6637 -0.8711 10 6 5.8755 -1.6577 -1.8027 11 6 7.0000 -2.3338 -2.6149 12 6 6.6595 -3.8425 -2.4908 13 8 5.6672 -4.2239 -3.4458 14 6 7.8977 -4.6894 -2.6352 15 1 8.8562 -4.2205 -2.8018 16 6 7.8068 -6.0627 -2.5545 17 7 6.6397 -6.6337 -2.3511 18 14 9.3415 -7.1125 -2.7341 19 1 9.9561 -7.3232 -1.3988 20 1 8.9767 -8.4256 -3.3239 21 1 10.3115 -6.4231 -3.6224 22 6 6.1033 -3.9157 -1.0445 23 6 2.1952 -1.1955 0.0058 24 6 1.4416 -2.5005 0.0116 25 1 -0.3634 0.0050 1.0276 26 1 -0.3632 0.8875 -0.5182 27 1 -0.3633 -0.8924 -0.5096 28 1 1.6540 2.1325 -0.0004 29 1 4.1137 2.1473 -0.0105 30 1 5.3612 0.0274 -0.0106 31 1 5.0853 -1.3200 -2.4733 32 1 6.2755 -0.8108 -1.2451 33 1 6.9679 -2.0157 -3.6570 34 1 7.9746 -2.1210 -2.1755 35 1 5.4217 -5.1584 -3.4060 36 1 6.5758 -7.5999 -2.2940 37 1 6.9195 -3.9675 -0.3239 38 1 5.4444 -4.7770 -0.9351 39 1 1.3182 -2.8443 1.0386 40 1 0.4617 -2.3563 -0.4435 41 1 1.9998 -3.2450 -0.5561 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:44 Heat of formation + Delta-G solvation = -82.769792 kcal Electronic energy + Delta-G solvation = -23461.286472 eV Core-core repulsion = 20111.852822 eV Total energy + Delta-G solvation = -3349.433650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.56795 -39.98367 -38.73164 -36.19500 -34.37902 -34.18425 -33.22333 -31.77375 -29.77831 -28.70774 -27.39163 -27.04270 -24.97495 -23.23858 -21.81177 -21.46117 -20.32720 -19.17824 -18.16030 -17.34215 -17.06304 -16.94236 -16.64804 -16.15657 -15.95704 -15.29193 -14.90621 -14.73942 -14.69309 -14.55427 -13.95213 -13.77279 -13.67762 -13.54240 -13.47748 -13.31165 -12.87511 -12.77563 -12.71797 -12.49487 -12.46441 -12.32111 -12.24696 -12.12022 -11.75561 -11.27886 -10.96908 -10.67450 -10.35562 -9.79957 -9.53777 -9.49683 -8.28467 -6.45878 0.02533 0.38635 1.41128 1.42971 1.53237 1.65082 2.07155 2.37037 2.76888 2.97844 3.47980 3.75350 3.80215 3.88084 4.04869 4.09011 4.18242 4.19340 4.31144 4.39685 4.57201 4.61210 4.67654 4.70731 4.72274 4.84444 4.91736 4.95762 4.96990 5.04178 5.08347 5.25536 5.33765 5.38321 5.40974 5.42919 5.48455 5.64475 5.73168 6.00429 6.01800 6.55905 6.64804 7.07900 7.26927 7.35384 8.77551 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030004 B = 0.004205 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.995718 B = 6656.516367 C = 7057.749848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.097 4.097 3 C -0.094 4.094 4 C -0.119 4.119 5 C -0.101 4.101 6 C -0.142 4.142 7 C 0.559 3.441 8 O -0.590 6.590 9 N -0.607 5.607 10 C 0.108 3.892 11 C -0.113 4.113 12 C 0.234 3.766 13 O -0.590 6.590 14 C -0.557 4.557 15 H 0.073 0.927 16 C 0.025 3.975 17 N -0.920 5.920 18 Si 0.968 3.032 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.263 1.263 22 C 0.106 3.894 23 C -0.062 4.062 24 C -0.112 4.112 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.162 0.838 29 H 0.163 0.837 30 H 0.135 0.865 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.377 0.623 36 H 0.271 0.729 37 H 0.047 0.953 38 H 0.039 0.961 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.157 17.331 2.639 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.112 4.112 4 C -0.137 4.137 5 C -0.119 4.119 6 C -0.145 4.145 7 C 0.349 3.651 8 O -0.472 6.472 9 N -0.338 5.338 10 C -0.014 4.014 11 C -0.151 4.151 12 C 0.193 3.807 13 O -0.400 6.400 14 C -0.595 4.595 15 H 0.091 0.909 16 C -0.176 4.176 17 N -0.560 5.560 18 Si 0.793 3.207 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.187 1.187 22 C -0.017 4.017 23 C -0.063 4.063 24 C -0.168 4.168 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.088 0.912 28 H 0.180 0.820 29 H 0.180 0.820 30 H 0.153 0.847 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.228 0.772 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.402 17.347 2.933 19.497 hybrid contribution 0.889 -2.193 0.265 2.381 sum -7.513 15.154 3.198 17.214 Atomic orbital electron populations 1.20925 0.88717 1.04039 1.03411 1.20053 0.97851 0.91551 1.00206 1.21614 0.94383 0.98176 0.97046 1.21435 0.94658 0.98001 0.99566 1.21506 1.00672 0.91253 0.98505 1.19760 0.94229 0.92497 1.08035 1.18689 0.78996 0.87861 0.79550 1.90701 1.68665 1.46795 1.41082 1.48743 1.33114 1.15132 1.36827 1.22275 0.96586 0.91014 0.91489 1.22668 0.98033 0.93601 1.00766 1.19884 0.85850 0.92196 0.82772 1.86057 1.61416 1.32497 1.59987 1.21857 0.94664 0.92053 1.50916 0.90901 1.25868 0.99399 0.99346 0.92954 1.69687 1.25395 1.11550 1.49401 0.85404 0.79232 0.77710 0.78393 1.20237 1.20910 1.18704 1.22929 0.93342 0.84868 1.00537 1.19913 0.91573 0.96614 0.98221 1.20827 1.00343 0.93378 1.02275 0.90048 0.89158 0.91163 0.82016 0.81975 0.84685 0.91488 0.88660 0.89553 0.88824 0.77238 0.91972 0.93467 0.94274 0.91260 0.88449 0.95029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 9.59 71.24 0.68 -1.04 16 2 C -0.10 -2.13 5.87 -19.90 -0.12 -2.24 16 3 C -0.09 -1.66 9.69 22.33 0.22 -1.44 16 4 C -0.12 -2.23 10.03 22.23 0.22 -2.00 16 5 C -0.10 -2.63 8.53 22.53 0.19 -2.44 16 6 C -0.14 -4.86 5.40 -20.09 -0.11 -4.97 16 7 C 0.56 24.45 6.51 86.79 0.57 25.02 16 8 O -0.59 -30.38 15.98 -3.88 -0.06 -30.44 16 9 N -0.61 -26.42 3.32 -814.74 -2.71 -29.13 16 10 C 0.11 3.77 5.67 86.73 0.49 4.26 16 11 C -0.11 -4.36 6.12 31.78 0.19 -4.17 16 12 C 0.23 11.56 0.89 -10.07 -0.01 11.55 16 13 O -0.59 -31.50 13.19 -148.98 -1.97 -33.46 16 14 C -0.56 -29.20 8.25 25.60 0.21 -28.99 16 15 H 0.07 3.65 7.76 -2.91 -0.02 3.63 16 16 C 0.02 1.30 5.30 84.65 0.45 1.75 16 17 N -0.92 -51.03 10.72 21.45 0.23 -50.80 16 18 Si 0.97 41.96 29.54 68.60 2.03 43.98 16 19 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 22 C 0.11 5.41 5.63 86.93 0.49 5.90 16 23 C -0.06 -1.90 5.91 -19.61 -0.12 -2.02 16 24 C -0.11 -3.51 8.56 71.23 0.61 -2.90 16 25 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.09 0.93 8.09 -2.39 -0.02 0.91 16 27 H 0.07 1.09 5.90 -2.39 -0.01 1.08 16 28 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 29 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 30 H 0.14 3.20 6.00 -2.91 -0.02 3.19 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.10 2.59 6.01 -2.39 -0.01 2.57 16 33 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.09 3.28 8.01 -2.39 -0.02 3.26 16 35 H 0.38 21.22 6.93 -74.06 -0.51 20.70 16 36 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 37 H 0.05 2.46 8.04 -2.39 -0.02 2.45 16 38 H 0.04 2.29 7.69 -2.39 -0.02 2.27 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.10 2.33 5.80 -2.39 -0.01 2.31 16 41 H 0.03 1.21 6.93 -2.39 -0.02 1.19 16 Total: -1.00 -69.29 330.18 2.03 -67.26 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: 0.54 Total: 36.32 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 3.97 Total: -3.74 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -2.48 Total: -79.93 kcal Atomic # 8 Polarization: -61.87 SS G_CDS: -2.03 Total: -63.90 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -69.29 2.03 -67.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.514 kcal (2) G-P(sol) polarization free energy of solvation -69.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds