Wall clock time and date at job start Tue Mar 31 2020 06:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38376 * 119.92852 * 2 1 4 4 C 1.38346 * 120.28994 * 180.27355 * 3 2 1 5 5 C 1.37974 * 120.14711 * 0.02562 * 4 3 2 6 6 C 1.39558 * 119.85385 * 359.97438 * 5 4 3 7 7 C 1.47844 * 120.14521 * 179.97438 * 6 5 4 8 8 O 1.21545 * 119.99881 * 225.78647 * 7 6 5 9 9 N 1.34780 * 119.99965 * 45.78838 * 7 6 5 10 10 C 1.47019 * 125.64747 * 4.93036 * 9 7 6 11 11 C 1.54337 * 107.26538 * 178.85349 * 10 9 7 12 12 C 1.55164 * 103.01689 * 338.14092 * 11 10 9 13 13 O 1.42905 * 111.00279 * 277.23215 * 12 11 10 14 14 C 1.50701 * 111.00091 * 153.38086 * 12 11 10 15 15 H 1.07995 * 120.00021 * 6.35428 * 14 12 11 16 16 C 1.37879 * 119.99958 * 186.34864 * 14 12 11 17 17 N 1.31519 * 119.99901 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00041 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47258 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47006 * 119.99991 * 18 16 14 21 21 H 1.48500 * 109.47052 * 239.99766 * 18 16 14 22 22 C 1.47425 * 125.64508 * 185.24248 * 9 7 6 23 23 C 1.37938 * 119.92495 * 180.28155 * 2 1 3 24 24 C 1.50703 * 120.07241 * 359.74163 * 23 2 1 25 25 H 1.09001 * 109.47215 * 269.72466 * 1 2 3 26 26 H 1.09004 * 109.47346 * 29.72020 * 1 2 3 27 27 H 1.09000 * 109.47617 * 149.72342 * 1 2 3 28 28 H 1.07994 * 119.85831 * 0.25576 * 3 2 1 29 29 H 1.08007 * 119.92466 * 179.97438 * 4 3 2 30 30 H 1.07998 * 120.07206 * 179.97438 * 5 4 3 31 31 H 1.09003 * 109.88584 * 298.39686 * 10 9 7 32 32 H 1.09005 * 109.88404 * 59.56520 * 10 9 7 33 33 H 1.09001 * 110.85148 * 219.68146 * 11 10 9 34 34 H 1.08997 * 110.66947 * 96.52227 * 11 10 9 35 35 H 0.96703 * 113.99507 * 173.65503 * 13 12 11 36 36 H 0.96999 * 120.00235 * 179.97438 * 17 16 14 37 37 H 1.08997 * 110.36497 * 322.92607 * 22 9 7 38 38 H 1.08996 * 110.36396 * 85.14301 * 22 9 7 39 39 H 1.08994 * 109.47154 * 85.03179 * 24 23 2 40 40 H 1.09006 * 109.46635 * 205.02539 * 24 23 2 41 41 H 1.08999 * 109.47167 * 325.02307 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1992 0.0000 4 6 3.5807 1.2080 -0.0057 5 6 4.2812 0.0193 -0.0120 6 6 3.5910 -1.1937 -0.0120 7 6 4.3351 -2.4713 -0.0193 8 8 4.0029 -3.3637 -0.7746 9 7 5.3817 -2.6463 0.8117 10 6 5.8257 -1.6965 1.8423 11 6 7.0352 -2.3318 2.5603 12 6 6.8598 -3.8454 2.2675 13 8 5.9405 -4.4414 3.1850 14 6 8.1872 -4.5584 2.2963 15 1 9.0776 -4.0296 2.6025 16 6 8.2647 -5.8859 1.9319 17 7 7.1803 -6.5298 1.5586 18 14 9.9099 -6.7699 1.9682 19 1 10.9667 -5.8304 2.4215 20 1 9.8339 -7.9186 2.9063 21 1 10.2367 -7.2637 0.6064 22 6 6.2747 -3.8192 0.8335 23 6 2.1950 -1.1955 -0.0059 24 6 1.4415 -2.5006 -0.0064 25 1 -0.3634 -0.0049 1.0277 26 1 -0.3634 0.8925 -0.5095 27 1 -0.3634 -0.8875 -0.5181 28 1 1.6539 2.1325 0.0042 29 1 4.1136 2.1474 -0.0061 30 1 5.3611 0.0275 -0.0168 31 1 6.1205 -0.7558 1.3772 32 1 5.0216 -1.5228 2.5576 33 1 6.9949 -2.1393 3.6324 34 1 7.9701 -1.9632 2.1384 35 1 5.7243 -5.3621 2.9829 36 1 7.2349 -7.4636 1.3019 37 1 5.7092 -4.7302 0.6377 38 1 7.0715 -3.7028 0.0989 39 1 1.1787 -2.7680 -1.0298 40 1 2.0680 -3.2820 0.4238 41 1 0.5329 -2.3957 0.5865 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842808.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:47 Heat of formation + Delta-G solvation = -65.076842 kcal Electronic energy + Delta-G solvation = -23452.749095 eV Core-core repulsion = 20104.082669 eV Total energy + Delta-G solvation = -3348.666426 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.20669 -38.59729 -37.03530 -34.37209 -33.31080 -32.23694 -32.08196 -30.11530 -28.15028 -27.40955 -26.40209 -25.24940 -23.45898 -21.86870 -20.79956 -19.67610 -18.83575 -17.17274 -16.68870 -16.00353 -15.82456 -15.31987 -14.93355 -14.52027 -14.43680 -14.16671 -13.63698 -13.21721 -13.07060 -12.90693 -12.84972 -12.67238 -12.50730 -12.12263 -11.87234 -11.74746 -11.61027 -11.46716 -11.29576 -11.06191 -10.95910 -10.71907 -10.57506 -10.46394 -10.19056 -9.42881 -9.31134 -8.73927 -8.70562 -8.54830 -8.35059 -7.77376 -6.28257 -4.38136 1.10762 1.36358 3.15013 3.19332 3.28381 3.31595 3.59073 3.89484 4.26219 4.74032 4.80856 4.88347 4.97382 4.99531 5.20040 5.27246 5.42456 5.49603 5.53623 5.61668 5.71419 5.72534 5.82610 5.85318 5.93114 6.02348 6.07288 6.17443 6.33193 6.40572 6.45013 6.50571 6.63887 6.72124 6.85152 6.94414 7.01469 7.24446 7.35730 7.73543 8.01542 8.21490 8.65274 8.72519 9.29391 9.37681 10.78799 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030647 B = 0.004175 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.408552 B = 6704.690133 C = 7091.852556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.105 4.105 4 C -0.129 4.129 5 C -0.092 4.092 6 C -0.113 4.113 7 C 0.564 3.436 8 O -0.542 6.542 9 N -0.603 5.603 10 C 0.103 3.897 11 C -0.118 4.118 12 C 0.248 3.752 13 O -0.582 6.582 14 C -0.538 4.538 15 H 0.067 0.933 16 C 0.071 3.929 17 N -0.892 5.892 18 Si 0.903 3.097 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.095 3.905 23 C -0.037 4.037 24 C -0.117 4.117 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.381 0.619 36 H 0.269 0.731 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.018 13.648 -1.790 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.123 4.123 4 C -0.147 4.147 5 C -0.110 4.110 6 C -0.116 4.116 7 C 0.352 3.648 8 O -0.421 6.421 9 N -0.335 5.335 10 C -0.020 4.020 11 C -0.156 4.156 12 C 0.208 3.792 13 O -0.391 6.391 14 C -0.576 4.576 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.531 5.531 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.026 4.026 23 C -0.038 4.038 24 C -0.173 4.173 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.231 0.769 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.274 13.583 -2.020 16.571 hybrid contribution 0.986 -0.969 -0.326 1.421 sum -8.288 12.614 -2.346 15.274 Atomic orbital electron populations 1.20794 0.91019 1.02805 1.02323 1.19688 0.96123 0.92319 1.01633 1.21103 0.94260 0.97267 0.99645 1.21011 0.94190 0.97764 1.01781 1.21351 1.00146 0.91438 0.98115 1.19963 0.93608 0.93720 1.04287 1.17890 0.79571 0.86715 0.80650 1.90753 1.67099 1.43221 1.41033 1.48697 1.28837 1.22191 1.33789 1.22124 0.97766 0.91971 0.90136 1.22637 0.95972 0.96949 1.00075 1.19624 0.87752 0.88095 0.83737 1.86112 1.66230 1.31695 1.55026 1.21501 0.93699 0.96044 1.46366 0.91469 1.25082 0.97256 0.97436 0.93443 1.69730 1.27865 1.11170 1.44303 0.86357 0.83273 0.79527 0.77801 1.19585 1.20746 1.20780 1.23285 0.91467 0.86970 1.00923 1.19793 0.92002 0.95494 0.96488 1.20878 0.99577 0.94154 1.02720 0.91174 0.91645 0.91184 0.86003 0.85715 0.85336 0.92458 0.92194 0.90708 0.90393 0.76938 0.92054 0.89395 0.92086 0.90539 0.90589 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.21 36.00 0.33 -0.70 16 2 C -0.10 -1.21 5.87 -104.69 -0.61 -1.82 16 3 C -0.10 -1.16 9.69 -39.49 -0.38 -1.54 16 4 C -0.13 -1.50 10.03 -39.64 -0.40 -1.90 16 5 C -0.09 -1.30 8.43 -39.19 -0.33 -1.63 16 6 C -0.11 -1.91 5.37 -104.97 -0.56 -2.48 16 7 C 0.56 11.72 6.56 -12.33 -0.08 11.64 16 8 O -0.54 -12.93 15.56 5.33 0.08 -12.85 16 9 N -0.60 -12.65 3.33 -171.63 -0.57 -13.22 16 10 C 0.10 1.85 5.93 -3.06 -0.02 1.83 16 11 C -0.12 -2.34 6.13 -24.89 -0.15 -2.49 16 12 C 0.25 5.99 0.87 -89.62 -0.08 5.91 16 13 O -0.58 -14.83 13.16 -35.23 -0.46 -15.29 16 14 C -0.54 -13.91 8.27 -34.44 -0.28 -14.19 16 15 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 16 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 17 N -0.89 -23.77 10.69 55.43 0.59 -23.18 16 18 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 C 0.09 2.28 5.41 -2.53 -0.01 2.27 16 23 C -0.04 -0.56 5.91 -104.22 -0.62 -1.18 16 24 C -0.12 -1.73 8.15 36.01 0.29 -1.44 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.07 0.63 6.80 -51.93 -0.35 0.27 16 28 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 30 H 0.13 1.71 6.25 -52.49 -0.33 1.38 16 31 H 0.06 0.86 5.80 -51.93 -0.30 0.56 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 35 H 0.38 9.96 7.57 45.56 0.34 10.30 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.09 2.38 7.28 -51.93 -0.38 2.00 16 38 H 0.06 1.51 8.03 -51.93 -0.42 1.09 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 1.35 6.33 -51.93 -0.33 1.02 16 41 H 0.06 0.77 7.00 -51.93 -0.36 0.41 16 LS Contribution 330.67 15.07 4.98 4.98 Total: -1.00 -29.62 330.67 -8.44 -38.06 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -5.04 Total: 12.22 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -3.00 Total: -5.98 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.02 Total: -36.40 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.38 Total: -28.14 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.62 -8.44 -38.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842808.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.017 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds