Wall clock time and date at job start Tue Mar 31 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38376 * 119.92852 * 2 1 4 4 C 1.38346 * 120.28994 * 180.27355 * 3 2 1 5 5 C 1.37974 * 120.14711 * 0.02562 * 4 3 2 6 6 C 1.39558 * 119.85385 * 359.97438 * 5 4 3 7 7 C 1.47844 * 120.14521 * 179.97438 * 6 5 4 8 8 O 1.21545 * 119.99881 * 225.78647 * 7 6 5 9 9 N 1.34780 * 119.99965 * 45.78838 * 7 6 5 10 10 C 1.47019 * 125.64747 * 4.93036 * 9 7 6 11 11 C 1.54337 * 107.26538 * 178.85349 * 10 9 7 12 12 C 1.55164 * 103.01689 * 338.14092 * 11 10 9 13 13 O 1.42905 * 111.00279 * 277.23215 * 12 11 10 14 14 C 1.50701 * 111.00091 * 153.38086 * 12 11 10 15 15 H 1.07995 * 120.00021 * 6.35428 * 14 12 11 16 16 C 1.37879 * 119.99958 * 186.34864 * 14 12 11 17 17 N 1.31519 * 119.99901 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00041 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47258 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47006 * 119.99991 * 18 16 14 21 21 H 1.48500 * 109.47052 * 239.99766 * 18 16 14 22 22 C 1.47425 * 125.64508 * 185.24248 * 9 7 6 23 23 C 1.37938 * 119.92495 * 180.28155 * 2 1 3 24 24 C 1.50703 * 120.07241 * 359.74163 * 23 2 1 25 25 H 1.09001 * 109.47215 * 269.72466 * 1 2 3 26 26 H 1.09004 * 109.47346 * 29.72020 * 1 2 3 27 27 H 1.09000 * 109.47617 * 149.72342 * 1 2 3 28 28 H 1.07994 * 119.85831 * 0.25576 * 3 2 1 29 29 H 1.08007 * 119.92466 * 179.97438 * 4 3 2 30 30 H 1.07998 * 120.07206 * 179.97438 * 5 4 3 31 31 H 1.09003 * 109.88584 * 298.39686 * 10 9 7 32 32 H 1.09005 * 109.88404 * 59.56520 * 10 9 7 33 33 H 1.09001 * 110.85148 * 219.68146 * 11 10 9 34 34 H 1.08997 * 110.66947 * 96.52227 * 11 10 9 35 35 H 0.96703 * 113.99507 * 173.65503 * 13 12 11 36 36 H 0.96999 * 120.00235 * 179.97438 * 17 16 14 37 37 H 1.08997 * 110.36497 * 322.92607 * 22 9 7 38 38 H 1.08996 * 110.36396 * 85.14301 * 22 9 7 39 39 H 1.08994 * 109.47154 * 85.03179 * 24 23 2 40 40 H 1.09006 * 109.46635 * 205.02539 * 24 23 2 41 41 H 1.08999 * 109.47167 * 325.02307 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1992 0.0000 4 6 3.5807 1.2080 -0.0057 5 6 4.2812 0.0193 -0.0120 6 6 3.5910 -1.1937 -0.0120 7 6 4.3351 -2.4713 -0.0193 8 8 4.0029 -3.3637 -0.7746 9 7 5.3817 -2.6463 0.8117 10 6 5.8257 -1.6965 1.8423 11 6 7.0352 -2.3318 2.5603 12 6 6.8598 -3.8454 2.2675 13 8 5.9405 -4.4414 3.1850 14 6 8.1872 -4.5584 2.2963 15 1 9.0776 -4.0296 2.6025 16 6 8.2647 -5.8859 1.9319 17 7 7.1803 -6.5298 1.5586 18 14 9.9099 -6.7699 1.9682 19 1 10.9667 -5.8304 2.4215 20 1 9.8339 -7.9186 2.9063 21 1 10.2367 -7.2637 0.6064 22 6 6.2747 -3.8192 0.8335 23 6 2.1950 -1.1955 -0.0059 24 6 1.4415 -2.5006 -0.0064 25 1 -0.3634 -0.0049 1.0277 26 1 -0.3634 0.8925 -0.5095 27 1 -0.3634 -0.8875 -0.5181 28 1 1.6539 2.1325 0.0042 29 1 4.1136 2.1474 -0.0061 30 1 5.3611 0.0275 -0.0168 31 1 6.1205 -0.7558 1.3772 32 1 5.0216 -1.5228 2.5576 33 1 6.9949 -2.1393 3.6324 34 1 7.9701 -1.9632 2.1384 35 1 5.7243 -5.3621 2.9829 36 1 7.2349 -7.4636 1.3019 37 1 5.7092 -4.7302 0.6377 38 1 7.0715 -3.7028 0.0989 39 1 1.1787 -2.7680 -1.0298 40 1 2.0680 -3.2820 0.4238 41 1 0.5329 -2.3957 0.5865 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842808.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:46 Heat of formation + Delta-G solvation = -84.381394 kcal Electronic energy + Delta-G solvation = -23453.586203 eV Core-core repulsion = 20104.082669 eV Total energy + Delta-G solvation = -3349.503534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.56965 -39.98513 -38.72880 -36.16102 -34.34570 -34.25978 -33.20872 -31.76815 -29.72564 -28.71651 -27.35620 -27.03819 -24.95974 -23.24488 -21.81212 -21.48974 -20.30736 -19.10763 -18.16858 -17.36241 -17.10745 -16.88224 -16.57956 -16.14178 -15.98238 -15.26592 -14.91024 -14.73472 -14.68480 -14.55359 -13.93531 -13.73309 -13.63735 -13.55289 -13.38442 -13.29491 -12.90895 -12.84443 -12.75054 -12.49106 -12.45174 -12.35550 -12.21728 -12.10764 -11.80048 -11.23745 -10.95520 -10.68596 -10.33463 -9.80942 -9.52888 -9.47740 -8.26438 -6.44239 0.01478 0.38333 1.39896 1.43081 1.54239 1.68448 2.07495 2.37635 2.76952 2.99545 3.48340 3.75008 3.82380 3.88641 4.05034 4.08386 4.18578 4.24694 4.31428 4.39724 4.57584 4.65004 4.68051 4.71623 4.74784 4.83917 4.89051 4.95501 5.01122 5.05044 5.13024 5.24938 5.31971 5.38216 5.42408 5.44568 5.49646 5.63650 5.73193 6.01556 6.04606 6.57642 6.66670 7.09447 7.24104 7.32528 8.79086 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030647 B = 0.004175 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.408552 B = 6704.690133 C = 7091.852556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.094 4.094 4 C -0.120 4.120 5 C -0.099 4.099 6 C -0.143 4.143 7 C 0.558 3.442 8 O -0.589 6.589 9 N -0.609 5.609 10 C 0.108 3.892 11 C -0.112 4.112 12 C 0.232 3.768 13 O -0.588 6.588 14 C -0.555 4.555 15 H 0.071 0.929 16 C 0.025 3.975 17 N -0.917 5.917 18 Si 0.966 3.034 19 H -0.262 1.262 20 H -0.280 1.280 21 H -0.283 1.283 22 C 0.109 3.891 23 C -0.060 4.060 24 C -0.111 4.111 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.162 0.838 29 H 0.162 0.838 30 H 0.133 0.867 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.372 0.628 36 H 0.269 0.731 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.400 17.397 -1.349 19.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.111 4.111 4 C -0.137 4.137 5 C -0.118 4.118 6 C -0.146 4.146 7 C 0.349 3.651 8 O -0.471 6.471 9 N -0.340 5.340 10 C -0.014 4.014 11 C -0.150 4.150 12 C 0.192 3.808 13 O -0.396 6.396 14 C -0.594 4.594 15 H 0.089 0.911 16 C -0.175 4.175 17 N -0.556 5.556 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.206 1.206 21 H -0.209 1.209 22 C -0.014 4.014 23 C -0.061 4.061 24 C -0.167 4.167 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.180 0.820 29 H 0.180 0.820 30 H 0.151 0.849 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.221 0.779 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.651 17.375 -1.556 19.936 hybrid contribution 1.031 -2.077 -0.483 2.368 sum -8.621 15.298 -2.038 17.678 Atomic orbital electron populations 1.20878 0.88690 1.03971 1.03407 1.20057 0.97844 0.91550 1.00242 1.21619 0.94343 0.98207 0.96960 1.21431 0.94673 0.97966 0.99646 1.21468 1.00545 0.91302 0.98465 1.19769 0.94220 0.92416 1.08176 1.18684 0.79098 0.87870 0.79460 1.90703 1.68229 1.45346 1.42830 1.48754 1.28799 1.21766 1.34677 1.22256 0.97104 0.92440 0.89571 1.22656 0.97573 0.93564 1.01205 1.19879 0.86861 0.90681 0.83418 1.86103 1.66719 1.31148 1.55586 1.21833 0.94547 0.96599 1.46374 0.91087 1.25857 1.00324 0.98273 0.93091 1.69863 1.29659 1.11242 1.44862 0.85385 0.79622 0.78369 0.77527 1.18563 1.20619 1.20865 1.22826 0.90947 0.86806 1.00818 1.19953 0.91574 0.96614 0.97987 1.20792 0.99922 0.93387 1.02622 0.89968 0.89175 0.91452 0.82026 0.82043 0.84882 0.88612 0.91669 0.89630 0.88829 0.77929 0.92207 0.93638 0.93652 0.90928 0.94736 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 9.21 71.23 0.66 -1.01 16 2 C -0.10 -2.09 5.87 -19.91 -0.12 -2.21 16 3 C -0.09 -1.61 9.69 22.33 0.22 -1.40 16 4 C -0.12 -2.22 10.03 22.23 0.22 -2.00 16 5 C -0.10 -2.59 8.43 22.53 0.19 -2.40 16 6 C -0.14 -4.83 5.37 -20.09 -0.11 -4.94 16 7 C 0.56 24.35 6.56 86.79 0.57 24.92 16 8 O -0.59 -30.30 15.56 -3.86 -0.06 -30.36 16 9 N -0.61 -26.39 3.33 -815.18 -2.71 -29.10 16 10 C 0.11 3.77 5.93 86.73 0.51 4.28 16 11 C -0.11 -4.33 6.13 31.79 0.19 -4.14 16 12 C 0.23 11.45 0.87 -10.15 -0.01 11.44 16 13 O -0.59 -31.07 13.16 -148.98 -1.96 -33.03 16 14 C -0.56 -29.17 8.27 25.60 0.21 -28.96 16 15 H 0.07 3.59 7.79 -2.91 -0.02 3.56 16 16 C 0.03 1.34 5.29 84.65 0.45 1.79 16 17 N -0.92 -51.03 10.69 21.45 0.23 -50.80 16 18 Si 0.97 42.13 29.54 68.60 2.03 44.15 16 19 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 C 0.11 5.53 5.41 86.85 0.47 6.00 16 23 C -0.06 -1.81 5.91 -19.61 -0.12 -1.93 16 24 C -0.11 -3.40 8.15 71.24 0.58 -2.82 16 25 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.09 0.91 8.08 -2.39 -0.02 0.89 16 27 H 0.07 1.04 6.80 -2.39 -0.02 1.02 16 28 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 29 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.13 3.22 6.25 -2.91 -0.02 3.20 16 31 H 0.10 2.62 5.80 -2.39 -0.01 2.60 16 32 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.09 3.29 8.03 -2.39 -0.02 3.27 16 35 H 0.37 20.64 7.57 -74.06 -0.56 20.08 16 36 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 37 H 0.05 2.66 7.28 -2.39 -0.02 2.65 16 38 H 0.05 2.38 8.03 -2.39 -0.02 2.36 16 39 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.03 1.32 6.33 -2.38 -0.02 1.30 16 41 H 0.09 2.18 7.00 -2.39 -0.02 2.17 16 Total: -1.00 -69.13 330.67 1.94 -67.19 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: 0.49 Total: 35.30 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 3.92 Total: -3.36 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -2.48 Total: -79.90 kcal Atomic # 8 Polarization: -61.37 SS G_CDS: -2.02 Total: -63.39 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -69.13 1.94 -67.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842808.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.187 kcal (2) G-P(sol) polarization free energy of solvation -69.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds