Wall clock time and date at job start Tue Mar 31 2020 06:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38366 * 119.92481 * 2 1 4 4 C 1.38364 * 120.28741 * 180.23535 * 3 2 1 5 5 C 1.50702 * 119.92433 * 179.74383 * 4 3 2 6 6 C 1.37959 * 120.14566 * 359.48485 * 4 3 2 7 7 C 1.39577 * 119.85189 * 0.51066 * 6 4 3 8 8 C 1.47844 * 120.14223 * 179.76830 * 7 6 4 9 9 O 1.21552 * 120.00124 * 333.13406 * 8 7 6 10 10 N 1.34777 * 119.99899 * 153.13350 * 8 7 6 11 11 C 1.47423 * 125.65033 * 3.18235 * 10 8 7 12 12 C 1.54905 * 104.83462 * 204.09100 * 11 10 8 13 13 C 1.55159 * 101.58014 * 322.98924 * 12 11 10 14 14 O 1.42894 * 110.72109 * 276.96066 * 13 12 11 15 15 C 1.50705 * 110.72124 * 153.86313 * 13 12 11 16 16 H 1.08002 * 119.99823 * 2.97275 * 15 13 12 17 17 C 1.37876 * 120.00011 * 182.96225 * 15 13 12 18 18 N 1.31520 * 119.99922 * 5.99743 * 17 15 13 19 19 Si 1.86793 * 119.99910 * 185.98967 * 17 15 13 20 20 H 1.48501 * 109.47239 * 94.97635 * 19 17 15 21 21 H 1.48503 * 109.47325 * 214.97487 * 19 17 15 22 22 H 1.48501 * 109.47364 * 334.97865 * 19 17 15 23 23 C 1.47022 * 125.64856 * 182.87105 * 10 8 7 24 24 C 1.37957 * 119.92765 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47160 * 89.99935 * 1 2 3 26 26 H 1.08992 * 109.47443 * 209.99830 * 1 2 3 27 27 H 1.09001 * 109.47170 * 330.00776 * 1 2 3 28 28 H 1.07997 * 119.85575 * 359.95317 * 3 2 1 29 29 H 1.09007 * 109.46545 * 89.99798 * 5 4 3 30 30 H 1.08997 * 109.46959 * 209.99226 * 5 4 3 31 31 H 1.08997 * 109.47198 * 329.99812 * 5 4 3 32 32 H 1.07999 * 120.07392 * 180.26074 * 6 4 3 33 33 H 1.09002 * 110.36418 * 322.92988 * 11 10 8 34 34 H 1.08998 * 110.36859 * 85.24687 * 11 10 8 35 35 H 1.09002 * 111.00352 * 81.06049 * 12 11 10 36 36 H 1.08994 * 111.00595 * 204.87773 * 12 11 10 37 37 H 0.96700 * 114.00424 * 173.91873 * 14 13 12 38 38 H 0.97001 * 119.99659 * 179.97438 * 18 17 15 39 39 H 1.09007 * 109.88398 * 298.39956 * 23 10 8 40 40 H 1.08995 * 109.88168 * 59.56038 * 23 10 8 41 41 H 1.07993 * 120.07247 * 0.04983 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5808 1.2080 -0.0049 5 6 4.3243 2.5188 -0.0107 6 6 4.2812 0.0194 0.0009 7 6 3.5910 -1.1938 0.0009 8 6 4.3351 -2.4713 0.0020 9 8 5.4528 -2.5240 -0.4730 10 7 3.7742 -3.5774 0.5295 11 6 2.4082 -3.6711 1.0759 12 6 2.4592 -4.8578 2.0702 13 6 3.4134 -5.8375 1.3372 14 8 2.7003 -6.6066 0.3666 15 6 4.1106 -6.7400 2.3223 16 1 3.8737 -6.6766 3.3741 17 6 5.0508 -7.6467 1.8808 18 7 5.4254 -7.6443 0.6201 19 14 5.7926 -8.8783 3.0733 20 1 5.0407 -10.1566 2.9961 21 1 7.2142 -9.1180 2.7169 22 1 5.7126 -8.3397 4.4548 23 6 4.4211 -4.8922 0.6496 24 6 2.1953 -1.1956 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5137 28 1 1.6537 2.1324 -0.0008 29 1 4.5071 2.8373 1.0156 30 1 5.2759 2.3945 -0.5275 31 1 3.7277 3.2726 -0.5243 32 1 5.3612 0.0276 0.0013 33 1 2.1441 -2.7508 1.5969 34 1 1.6937 -3.8748 0.2783 35 1 2.8779 -4.5477 3.0276 36 1 1.4715 -5.2993 2.2026 37 1 3.2648 -7.1670 -0.1832 38 1 6.0871 -8.2820 0.3096 39 1 4.6738 -5.2729 -0.3401 40 1 5.3218 -4.8080 1.2576 41 1 1.6553 -2.1309 0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:45 Heat of formation + Delta-G solvation = -62.057534 kcal Electronic energy + Delta-G solvation = -23162.629899 eV Core-core repulsion = 19814.094401 eV Total energy + Delta-G solvation = -3348.535499 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.18746 -38.62945 -37.12509 -34.49764 -33.54022 -32.24987 -32.12300 -30.00212 -28.13246 -27.37511 -26.58806 -25.40805 -23.69479 -21.93085 -20.75631 -19.64642 -18.87641 -17.20443 -16.58188 -16.19542 -15.78224 -15.40560 -14.84242 -14.61022 -14.30478 -14.04243 -13.62057 -13.33100 -13.17484 -13.16421 -12.94121 -12.78815 -12.64394 -12.17373 -12.03477 -11.86623 -11.60934 -11.48824 -11.25960 -11.12704 -11.00874 -10.72996 -10.61858 -10.48342 -10.19586 -9.41733 -9.32090 -8.76423 -8.71261 -8.58328 -8.32955 -7.90022 -6.29273 -4.37765 1.02877 1.33935 3.14450 3.20636 3.28749 3.31277 3.57945 3.93161 4.26856 4.65885 4.72140 4.78122 4.97898 5.07421 5.20935 5.23146 5.34478 5.44687 5.46780 5.48204 5.52119 5.67146 5.70799 5.74076 5.79696 5.94035 5.98684 6.07643 6.15304 6.41274 6.44501 6.49055 6.52740 6.73060 6.84072 6.90555 6.98857 7.24254 7.36925 7.71892 8.00078 8.18082 8.63964 8.71390 9.25998 9.34479 10.78266 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026588 B = 0.004077 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.863498 B = 6866.378779 C = 7447.171637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.106 4.106 4 C -0.095 4.095 5 C -0.112 4.112 6 C -0.073 4.073 7 C -0.110 4.110 8 C 0.559 3.441 9 O -0.547 6.547 10 N -0.604 5.604 11 C 0.094 3.906 12 C -0.119 4.119 13 C 0.248 3.752 14 O -0.584 6.584 15 C -0.539 4.539 16 H 0.067 0.933 17 C 0.071 3.929 18 N -0.892 5.892 19 Si 0.903 3.097 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.105 3.895 24 C -0.106 4.106 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.122 0.878 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.131 0.869 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.381 0.619 38 H 0.270 0.730 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.118 15.779 -0.409 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.124 4.124 4 C -0.095 4.095 5 C -0.168 4.168 6 C -0.092 4.092 7 C -0.113 4.113 8 C 0.348 3.652 9 O -0.427 6.427 10 N -0.335 5.335 11 C -0.029 4.029 12 C -0.157 4.157 13 C 0.207 3.793 14 O -0.392 6.392 15 C -0.577 4.577 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.531 5.531 19 Si 0.731 3.269 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.017 4.017 24 C -0.124 4.124 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.140 0.860 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.149 0.851 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.231 0.769 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.871 15.998 -0.547 17.837 hybrid contribution 1.018 -1.027 0.274 1.472 sum -6.853 14.970 -0.274 16.466 Atomic orbital electron populations 1.20783 0.90853 1.02900 1.02411 1.19846 0.96210 0.92796 1.00468 1.21028 0.93454 0.97504 1.00405 1.19826 0.93785 0.95169 1.00697 1.20770 1.00063 0.93643 1.02353 1.21088 1.00360 0.90403 0.97312 1.20037 0.93806 0.93805 1.03645 1.17957 0.85695 0.82780 0.78808 1.90748 1.19682 1.85332 1.46939 1.48722 1.15454 1.11056 1.58314 1.22672 0.84181 0.99227 0.96780 1.22793 1.01065 0.94408 0.97423 1.19515 0.86515 0.87327 0.85906 1.86113 1.39613 1.61380 1.52119 1.21502 1.22372 1.19601 0.94229 0.91487 1.25073 0.95358 0.97163 0.95639 1.69758 1.31935 1.36496 1.14878 0.86395 0.78265 0.81229 0.81052 1.20399 1.21040 1.19694 1.23066 0.97633 0.79381 1.01581 1.21821 0.93278 0.98934 0.98414 0.91147 0.91222 0.91579 0.86024 0.91162 0.91359 0.91588 0.85136 0.91154 0.91412 0.90391 0.90404 0.76935 0.92027 0.91455 0.91293 0.84099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.09 -1.09 5.87 -104.68 -0.61 -1.71 16 3 C -0.11 -1.17 9.35 -39.49 -0.37 -1.54 16 4 C -0.09 -1.14 5.87 -104.68 -0.61 -1.76 16 5 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 6 C -0.07 -1.09 9.24 -39.18 -0.36 -1.46 16 7 C -0.11 -1.85 5.70 -104.97 -0.60 -2.45 16 8 C 0.56 11.75 7.65 -12.33 -0.09 11.66 16 9 O -0.55 -13.37 16.98 5.32 0.09 -13.28 16 10 N -0.60 -12.70 3.33 -171.63 -0.57 -13.27 16 11 C 0.09 1.65 5.01 -2.53 -0.01 1.64 16 12 C -0.12 -2.33 6.23 -24.58 -0.15 -2.49 16 13 C 0.25 5.94 0.85 -89.93 -0.08 5.86 16 14 O -0.58 -14.42 13.07 -35.23 -0.46 -14.88 16 15 C -0.54 -14.03 8.11 -34.44 -0.28 -14.31 16 16 H 0.07 1.72 7.78 -52.49 -0.41 1.31 16 17 C 0.07 1.86 5.28 -17.82 -0.09 1.76 16 18 N -0.89 -23.79 11.03 55.43 0.61 -23.18 16 19 Si 0.90 20.44 29.54 -169.99 -5.02 15.41 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 C 0.10 2.55 5.22 -3.06 -0.02 2.54 16 24 C -0.11 -1.51 7.59 -39.19 -0.30 -1.81 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 27 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 28 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.13 1.98 7.88 -52.49 -0.41 1.57 16 33 H 0.07 1.05 6.18 -51.93 -0.32 0.73 16 34 H 0.07 1.13 7.27 -51.93 -0.38 0.75 16 35 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.38 9.63 7.53 45.56 0.34 9.97 16 38 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.07 1.79 7.91 -51.93 -0.41 1.38 16 40 H 0.07 1.84 7.81 -51.93 -0.41 1.44 16 41 H 0.14 1.93 4.54 -52.49 -0.24 1.69 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -29.98 335.31 -8.31 -38.29 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.15 Total: 11.16 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.86 Total: -5.31 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.04 Total: -36.46 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.37 Total: -28.16 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.98 -8.31 -38.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.764 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds