Wall clock time and date at job start Tue Mar 31 2020 06:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38366 * 119.92481 * 2 1 4 4 C 1.38364 * 120.28741 * 180.23535 * 3 2 1 5 5 C 1.50702 * 119.92433 * 179.74383 * 4 3 2 6 6 C 1.37959 * 120.14566 * 359.48485 * 4 3 2 7 7 C 1.39577 * 119.85189 * 0.51066 * 6 4 3 8 8 C 1.47844 * 120.14223 * 179.76830 * 7 6 4 9 9 O 1.21552 * 120.00124 * 333.13406 * 8 7 6 10 10 N 1.34777 * 119.99899 * 153.13350 * 8 7 6 11 11 C 1.47423 * 125.65033 * 3.18235 * 10 8 7 12 12 C 1.54905 * 104.83462 * 204.09100 * 11 10 8 13 13 C 1.55159 * 101.58014 * 322.98924 * 12 11 10 14 14 O 1.42894 * 110.72109 * 276.96066 * 13 12 11 15 15 C 1.50705 * 110.72124 * 153.86313 * 13 12 11 16 16 H 1.08002 * 119.99823 * 2.97275 * 15 13 12 17 17 C 1.37876 * 120.00011 * 182.96225 * 15 13 12 18 18 N 1.31520 * 119.99922 * 5.99743 * 17 15 13 19 19 Si 1.86793 * 119.99910 * 185.98967 * 17 15 13 20 20 H 1.48501 * 109.47239 * 94.97635 * 19 17 15 21 21 H 1.48503 * 109.47325 * 214.97487 * 19 17 15 22 22 H 1.48501 * 109.47364 * 334.97865 * 19 17 15 23 23 C 1.47022 * 125.64856 * 182.87105 * 10 8 7 24 24 C 1.37957 * 119.92765 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.47160 * 89.99935 * 1 2 3 26 26 H 1.08992 * 109.47443 * 209.99830 * 1 2 3 27 27 H 1.09001 * 109.47170 * 330.00776 * 1 2 3 28 28 H 1.07997 * 119.85575 * 359.95317 * 3 2 1 29 29 H 1.09007 * 109.46545 * 89.99798 * 5 4 3 30 30 H 1.08997 * 109.46959 * 209.99226 * 5 4 3 31 31 H 1.08997 * 109.47198 * 329.99812 * 5 4 3 32 32 H 1.07999 * 120.07392 * 180.26074 * 6 4 3 33 33 H 1.09002 * 110.36418 * 322.92988 * 11 10 8 34 34 H 1.08998 * 110.36859 * 85.24687 * 11 10 8 35 35 H 1.09002 * 111.00352 * 81.06049 * 12 11 10 36 36 H 1.08994 * 111.00595 * 204.87773 * 12 11 10 37 37 H 0.96700 * 114.00424 * 173.91873 * 14 13 12 38 38 H 0.97001 * 119.99659 * 179.97438 * 18 17 15 39 39 H 1.09007 * 109.88398 * 298.39956 * 23 10 8 40 40 H 1.08995 * 109.88168 * 59.56038 * 23 10 8 41 41 H 1.07993 * 120.07247 * 0.04983 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5808 1.2080 -0.0049 5 6 4.3243 2.5188 -0.0107 6 6 4.2812 0.0194 0.0009 7 6 3.5910 -1.1938 0.0009 8 6 4.3351 -2.4713 0.0020 9 8 5.4528 -2.5240 -0.4730 10 7 3.7742 -3.5774 0.5295 11 6 2.4082 -3.6711 1.0759 12 6 2.4592 -4.8578 2.0702 13 6 3.4134 -5.8375 1.3372 14 8 2.7003 -6.6066 0.3666 15 6 4.1106 -6.7400 2.3223 16 1 3.8737 -6.6766 3.3741 17 6 5.0508 -7.6467 1.8808 18 7 5.4254 -7.6443 0.6201 19 14 5.7926 -8.8783 3.0733 20 1 5.0407 -10.1566 2.9961 21 1 7.2142 -9.1180 2.7169 22 1 5.7126 -8.3397 4.4548 23 6 4.4211 -4.8922 0.6496 24 6 2.1953 -1.1956 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5137 28 1 1.6537 2.1324 -0.0008 29 1 4.5071 2.8373 1.0156 30 1 5.2759 2.3945 -0.5275 31 1 3.7277 3.2726 -0.5243 32 1 5.3612 0.0276 0.0013 33 1 2.1441 -2.7508 1.5969 34 1 1.6937 -3.8748 0.2783 35 1 2.8779 -4.5477 3.0276 36 1 1.4715 -5.2993 2.2026 37 1 3.2648 -7.1670 -0.1832 38 1 6.0871 -8.2820 0.3096 39 1 4.6738 -5.2729 -0.3401 40 1 5.3218 -4.8080 1.2576 41 1 1.6553 -2.1309 0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:45 Heat of formation + Delta-G solvation = -81.638515 kcal Electronic energy + Delta-G solvation = -23163.478994 eV Core-core repulsion = 19814.094401 eV Total energy + Delta-G solvation = -3349.384594 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.59272 -39.97385 -38.86290 -36.26885 -34.46248 -34.26753 -33.29761 -31.66472 -29.78248 -28.22432 -27.67138 -27.11941 -25.25010 -23.32709 -21.82682 -21.35739 -20.37069 -19.14546 -18.06602 -17.45528 -17.28644 -16.82270 -16.62305 -16.12800 -15.95492 -15.00674 -14.85746 -14.79807 -14.71527 -14.52464 -14.04660 -13.95278 -13.80099 -13.51215 -13.42734 -13.26163 -12.88528 -12.77143 -12.58490 -12.49594 -12.44580 -12.34269 -12.27112 -12.11481 -11.88246 -11.18216 -11.04752 -10.69233 -10.31457 -9.87767 -9.63725 -9.52620 -8.28856 -6.44988 -0.10495 0.34513 1.39805 1.41763 1.51791 1.72072 1.99102 2.36585 2.75805 2.96925 3.42241 3.70720 3.80711 3.86197 4.01872 4.14340 4.16741 4.28508 4.35084 4.37681 4.50087 4.60220 4.64104 4.69097 4.84077 4.87520 4.92645 4.97429 4.99507 5.06292 5.15365 5.21930 5.29844 5.33891 5.37946 5.47301 5.53638 5.58436 5.70711 5.98419 6.02745 6.52686 6.63281 7.03819 7.22730 7.30173 8.77103 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026588 B = 0.004077 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.863498 B = 6866.378779 C = 7447.171637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 C -0.094 4.094 4 C -0.091 4.091 5 C -0.111 4.111 6 C -0.093 4.093 7 C -0.136 4.136 8 C 0.552 3.448 9 O -0.598 6.598 10 N -0.609 5.609 11 C 0.101 3.899 12 C -0.113 4.113 13 C 0.235 3.765 14 O -0.584 6.584 15 C -0.559 4.559 16 H 0.068 0.932 17 C 0.026 3.974 18 N -0.916 5.916 19 Si 0.964 3.036 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.266 1.266 23 C 0.122 3.878 24 C -0.113 4.113 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.161 0.839 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.374 0.626 38 H 0.270 0.730 39 H 0.032 0.968 40 H 0.032 0.968 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.926 18.242 0.598 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 C -0.112 4.112 4 C -0.091 4.091 5 C -0.167 4.167 6 C -0.112 4.112 7 C -0.139 4.139 8 C 0.343 3.657 9 O -0.481 6.481 10 N -0.340 5.340 11 C -0.020 4.020 12 C -0.151 4.151 13 C 0.194 3.806 14 O -0.391 6.391 15 C -0.597 4.597 16 H 0.087 0.913 17 C -0.175 4.175 18 N -0.555 5.555 19 Si 0.790 3.210 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.001 4.001 24 C -0.131 4.131 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.107 0.893 28 H 0.179 0.821 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.132 0.868 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.223 0.777 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.724 18.478 0.477 21.370 hybrid contribution 1.878 -1.693 -0.074 2.529 sum -8.847 16.785 0.403 18.978 Atomic orbital electron populations 1.20878 0.88100 1.04378 1.03527 1.20246 0.98073 0.91905 0.98462 1.21516 0.92977 0.98910 0.97826 1.20176 0.94679 0.95141 0.99090 1.20850 0.99999 0.92426 1.03472 1.21128 0.99915 0.91279 0.98928 1.19768 0.94912 0.91730 1.07448 1.18802 0.85392 0.84046 0.77430 1.90696 1.22108 1.86256 1.49079 1.48775 1.16710 1.09890 1.58589 1.22855 0.82363 0.99954 0.96865 1.22799 1.00862 0.93850 0.97558 1.19701 0.87655 0.87528 0.85687 1.86099 1.39469 1.61358 1.52194 1.21850 1.22875 1.20276 0.94737 0.91345 1.25834 0.95793 0.98808 0.97100 1.69875 1.32275 1.36987 1.16328 0.85441 0.77220 0.79136 0.79239 1.19704 1.21256 1.19050 1.22583 0.97032 0.81671 0.98814 1.21872 0.91887 1.00426 0.98942 0.90065 0.90683 0.89294 0.82124 0.89906 0.91754 0.89072 0.86816 0.87746 0.89964 0.89903 0.88468 0.77735 0.92122 0.94966 0.94925 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 10.01 71.24 0.71 -0.67 16 2 C -0.09 -1.71 5.87 -19.90 -0.12 -1.82 16 3 C -0.09 -1.68 9.35 22.33 0.21 -1.47 16 4 C -0.09 -1.97 5.87 -19.90 -0.12 -2.09 16 5 C -0.11 -1.64 10.01 71.24 0.71 -0.93 16 6 C -0.09 -2.82 9.24 22.53 0.21 -2.62 16 7 C -0.14 -4.61 5.70 -20.09 -0.11 -4.72 16 8 C 0.55 24.39 7.65 86.79 0.66 25.05 16 9 O -0.60 -31.49 16.98 -3.88 -0.07 -31.55 16 10 N -0.61 -26.52 3.33 -815.19 -2.71 -29.23 16 11 C 0.10 3.43 5.01 86.85 0.43 3.86 16 12 C -0.11 -4.33 6.23 31.99 0.20 -4.13 16 13 C 0.23 11.50 0.85 -10.35 -0.01 11.49 16 14 O -0.58 -29.43 13.07 -148.98 -1.95 -31.38 16 15 C -0.56 -29.69 8.11 25.60 0.21 -29.48 16 16 H 0.07 3.52 7.78 -2.91 -0.02 3.50 16 17 C 0.03 1.37 5.28 84.65 0.45 1.81 16 18 N -0.92 -50.82 11.03 21.45 0.24 -50.59 16 19 Si 0.96 42.51 29.54 68.60 2.03 44.54 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 23 C 0.12 6.31 5.22 86.73 0.45 6.76 16 24 C -0.11 -3.00 7.59 22.53 0.17 -2.83 16 25 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 27 H 0.09 0.74 8.08 -2.39 -0.02 0.72 16 28 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.06 1.01 8.08 -2.39 -0.02 0.99 16 31 H 0.09 0.91 8.08 -2.39 -0.02 0.89 16 32 H 0.11 3.69 7.88 -2.91 -0.02 3.67 16 33 H 0.10 2.87 6.18 -2.39 -0.01 2.86 16 34 H 0.08 2.59 7.27 -2.39 -0.02 2.57 16 35 H 0.08 3.07 8.04 -2.39 -0.02 3.05 16 36 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 37 H 0.37 19.72 7.53 -74.06 -0.56 19.17 16 38 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 39 H 0.03 1.85 7.91 -2.38 -0.02 1.83 16 40 H 0.03 1.87 7.81 -2.39 -0.02 1.85 16 41 H 0.14 3.62 4.54 -2.91 -0.01 3.61 16 Total: -1.00 -69.59 335.31 2.09 -67.50 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: 0.49 Total: 32.47 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 4.06 Total: -1.77 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -2.47 Total: -79.82 kcal Atomic # 8 Polarization: -60.92 SS G_CDS: -2.01 Total: -62.93 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -69.59 2.09 -67.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.134 kcal (2) G-P(sol) polarization free energy of solvation -69.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds