Wall clock time and date at job start Tue Mar 31 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37959 * 120.06991 * 2 1 4 4 C 1.38367 * 120.13919 * 180.27762 * 3 2 1 5 5 C 1.38359 * 120.29460 * 359.74497 * 4 3 2 6 6 C 1.37959 * 120.14299 * 359.97350 * 5 4 3 7 7 C 1.50699 * 120.07142 * 180.02562 * 6 5 4 8 8 C 1.39570 * 119.85227 * 0.02807 * 6 5 4 9 9 C 1.47852 * 120.14176 * 179.97438 * 8 6 5 10 10 O 1.21555 * 119.99292 * 90.00206 * 9 8 6 11 11 N 1.34765 * 120.00270 * 269.99927 * 9 8 6 12 12 C 1.47485 * 125.59513 * 359.92982 * 11 9 8 13 13 C 1.54323 * 107.03985 * 181.08450 * 12 11 9 14 14 C 1.55156 * 103.09857 * 22.23947 * 13 12 11 15 15 O 1.42903 * 111.00391 * 82.48633 * 14 13 12 16 16 C 1.50705 * 111.00550 * 206.29451 * 14 13 12 17 17 H 1.07998 * 119.99787 * 24.82983 * 16 14 13 18 18 C 1.37878 * 119.99951 * 204.83178 * 16 14 13 19 19 N 1.31512 * 119.99773 * 173.53226 * 18 16 14 20 20 Si 1.86799 * 120.00086 * 353.52844 * 18 16 14 21 21 H 1.48502 * 109.46882 * 87.32230 * 20 18 16 22 22 H 1.48494 * 109.47070 * 207.32063 * 20 18 16 23 23 H 1.48497 * 109.47359 * 327.32654 * 20 18 16 24 24 C 1.47429 * 125.65045 * 180.02562 * 11 9 8 25 25 H 1.08997 * 109.47386 * 270.25535 * 1 2 3 26 26 H 1.09002 * 109.47585 * 30.25717 * 1 2 3 27 27 H 1.09004 * 109.47419 * 150.25256 * 1 2 3 28 28 H 1.07994 * 119.93217 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.84926 * 179.72340 * 4 3 2 30 30 H 1.08001 * 119.92607 * 180.02562 * 5 4 3 31 31 H 1.08998 * 109.47259 * 269.98070 * 7 6 5 32 32 H 1.09004 * 109.47034 * 29.98324 * 7 6 5 33 33 H 1.08999 * 109.47140 * 149.98532 * 7 6 5 34 34 H 1.09005 * 110.03266 * 61.72170 * 12 11 9 35 35 H 1.08996 * 109.96496 * 300.41366 * 12 11 9 36 36 H 1.09001 * 110.72110 * 263.79273 * 13 12 11 37 37 H 1.09000 * 110.71783 * 140.69093 * 13 12 11 38 38 H 0.96703 * 114.00656 * 56.20157 * 15 14 13 39 39 H 0.96997 * 119.99955 * 179.97438 * 19 18 16 40 40 H 1.08995 * 110.36486 * 36.98677 * 24 11 9 41 41 H 1.09002 * 110.36629 * 274.67131 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1939 0.0000 4 6 3.5819 1.1956 -0.0058 5 6 4.2813 0.0018 -0.0063 6 6 3.6021 -1.1990 -0.0005 7 6 4.3655 -2.4983 -0.0005 8 6 2.2064 -1.2078 0.0053 9 6 1.4721 -2.4910 0.0110 10 8 1.1746 -3.0162 1.0661 11 7 1.1325 -3.0783 -1.1534 12 6 1.4283 -2.5515 -2.4989 13 6 0.8258 -3.5438 -3.5156 14 6 -0.2640 -4.2761 -2.6888 15 8 -1.4699 -3.5110 -2.6394 16 6 -0.5246 -5.6546 -3.2395 17 1 0.2419 -6.1641 -3.8044 18 6 -1.7416 -6.2650 -3.0220 19 7 -2.0165 -7.4103 -3.6071 20 14 -2.9997 -5.4655 -1.8963 21 1 -3.8318 -4.5166 -2.6789 22 1 -3.8690 -6.5128 -1.3026 23 1 -2.2985 -4.7313 -0.8126 24 6 0.4027 -4.3517 -1.2929 25 1 -0.3634 0.0046 1.0276 26 1 -0.3634 0.8877 -0.5178 27 1 -0.3634 -0.8922 -0.5099 28 1 1.6583 2.1292 0.0004 29 1 4.1183 2.1330 -0.0103 30 1 5.3613 0.0101 -0.0104 31 1 4.5450 -2.8143 -1.0281 32 1 5.3192 -2.3594 0.5088 33 1 3.7845 -3.2611 0.5179 34 1 2.5064 -2.4812 -2.6437 35 1 0.9708 -1.5700 -2.6231 36 1 1.5829 -4.2465 -3.8637 37 1 0.3798 -3.0118 -4.3559 38 1 -1.8286 -3.2854 -3.5086 39 1 -2.8725 -7.8400 -3.4538 40 1 -0.3552 -4.4417 -0.5147 41 1 1.0949 -5.1925 -1.2483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847284.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:00 Heat of formation + Delta-G solvation = -62.527692 kcal Electronic energy + Delta-G solvation = -23885.401903 eV Core-core repulsion = 20536.846017 eV Total energy + Delta-G solvation = -3348.555886 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.38454 -38.75260 -37.34764 -34.72823 -33.66661 -32.41351 -32.14650 -30.20764 -28.59261 -27.68143 -26.72961 -25.25080 -23.33453 -22.09038 -20.77471 -19.90925 -19.12064 -17.58110 -17.18530 -16.13436 -15.87607 -15.33789 -14.98903 -14.91239 -14.41337 -14.12641 -13.92835 -13.64900 -13.27406 -13.07584 -12.97537 -12.75812 -12.54836 -12.39877 -12.05729 -11.92184 -11.82819 -11.68456 -11.56058 -11.41023 -11.10195 -10.88747 -10.61782 -10.33469 -10.23545 -9.62300 -9.25716 -8.79644 -8.67164 -8.62564 -8.54540 -8.13859 -6.22869 -4.35981 1.11439 1.26218 2.90517 3.34703 3.45212 3.54494 3.64453 3.72502 4.48616 4.61886 4.72012 4.72905 4.83037 5.01830 5.10010 5.16745 5.24107 5.31122 5.44036 5.50966 5.54432 5.57162 5.66136 5.72480 5.74380 5.80927 5.98302 6.05791 6.10271 6.20580 6.32210 6.38240 6.48244 6.48627 6.55388 6.62889 6.69198 6.85653 6.95907 7.42758 7.94017 8.09278 8.48417 8.58847 8.78065 9.38969 10.85654 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025866 B = 0.005069 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.260104 B = 5522.443683 C = 5807.722087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.046 4.046 3 C -0.130 4.130 4 C -0.103 4.103 5 C -0.130 4.130 6 C -0.049 4.049 7 C -0.122 4.122 8 C -0.113 4.113 9 C 0.574 3.426 10 O -0.543 6.543 11 N -0.603 5.603 12 C 0.106 3.894 13 C -0.149 4.149 14 C 0.221 3.779 15 O -0.559 6.559 16 C -0.553 4.553 17 H 0.082 0.918 18 C 0.076 3.924 19 N -0.886 5.886 20 Si 0.946 3.054 21 H -0.292 1.292 22 H -0.325 1.325 23 H -0.268 1.268 24 C 0.112 3.888 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.370 0.630 39 H 0.267 0.733 40 H 0.077 0.923 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.420 16.494 2.832 19.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.047 4.047 3 C -0.148 4.148 4 C -0.121 4.121 5 C -0.148 4.148 6 C -0.050 4.050 7 C -0.179 4.179 8 C -0.116 4.116 9 C 0.361 3.639 10 O -0.422 6.422 11 N -0.336 5.336 12 C -0.017 4.017 13 C -0.187 4.187 14 C 0.180 3.820 15 O -0.366 6.366 16 C -0.590 4.590 17 H 0.100 0.900 18 C -0.129 4.129 19 N -0.520 5.520 20 Si 0.782 3.218 21 H -0.220 1.220 22 H -0.256 1.256 23 H -0.194 1.194 24 C -0.009 4.009 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.218 0.782 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.273 16.011 4.046 19.449 hybrid contribution -0.683 0.431 -0.144 0.820 sum 9.590 16.442 3.902 19.430 Atomic orbital electron populations 1.20909 0.90649 1.03505 1.02987 1.19909 0.96216 0.91688 0.96887 1.20926 0.94250 0.97156 1.02464 1.21195 0.94165 0.97949 0.98820 1.20912 0.99764 0.91604 1.02554 1.19878 0.91879 0.95949 0.97255 1.20888 0.99900 0.94263 1.02837 1.19761 0.93477 0.93285 1.05085 1.17856 0.78998 0.83969 0.83052 1.90784 1.55706 1.65226 1.30461 1.48807 1.55538 1.24134 1.05098 1.22086 0.99225 0.97902 0.82460 1.23282 1.00471 0.97742 0.97195 1.20216 0.80939 0.90468 0.90353 1.86153 1.41857 1.74424 1.34196 1.21140 1.01869 0.99313 1.36697 0.89965 1.25140 0.98672 0.94486 0.94627 1.69956 1.23680 1.17066 1.41302 0.85718 0.79119 0.75850 0.81154 1.21955 1.25600 1.19428 1.22978 0.94832 0.83561 0.99555 0.90661 0.91067 0.90721 0.85698 0.85873 0.85703 0.90623 0.91054 0.91027 0.92362 0.92088 0.90146 0.90690 0.78165 0.92327 0.90424 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 9.62 36.00 0.35 -1.34 16 2 C -0.05 -0.65 5.91 -104.23 -0.62 -1.26 16 3 C -0.13 -1.46 9.69 -39.64 -0.38 -1.84 16 4 C -0.10 -1.05 10.04 -39.49 -0.40 -1.44 16 5 C -0.13 -1.43 9.69 -39.64 -0.38 -1.81 16 6 C -0.05 -0.66 5.91 -104.23 -0.62 -1.28 16 7 C -0.12 -1.51 9.62 36.00 0.35 -1.16 16 8 C -0.11 -1.79 4.81 -104.97 -0.51 -2.29 16 9 C 0.57 11.00 4.22 -12.33 -0.05 10.95 16 10 O -0.54 -12.44 17.36 5.32 0.09 -12.34 16 11 N -0.60 -11.38 3.34 -171.27 -0.57 -11.95 16 12 C 0.11 1.68 6.51 -2.81 -0.02 1.66 16 13 C -0.15 -2.56 6.10 -24.90 -0.15 -2.71 16 14 C 0.22 4.74 0.70 -89.64 -0.06 4.68 16 15 O -0.56 -11.84 8.51 -35.23 -0.30 -12.14 16 16 C -0.55 -14.30 8.89 -34.44 -0.31 -14.60 16 17 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 18 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 19 N -0.89 -25.95 13.96 55.43 0.77 -25.18 16 20 Si 0.95 23.66 24.91 -169.99 -4.23 19.43 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.32 -8.37 7.11 56.52 0.40 -7.97 16 23 H -0.27 -6.88 5.40 56.52 0.31 -6.57 16 24 C 0.11 2.44 5.88 -2.54 -0.01 2.43 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 27 H 0.07 1.21 7.08 -51.93 -0.37 0.84 16 28 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 29 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 33 H 0.07 1.06 7.08 -51.93 -0.37 0.69 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.38 7.98 -51.93 -0.41 0.97 16 37 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 38 H 0.37 6.69 8.99 45.56 0.41 7.10 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 40 H 0.08 1.90 6.48 -51.93 -0.34 1.57 16 41 H 0.08 1.75 8.03 -51.93 -0.42 1.34 16 LS Contribution 333.72 15.07 5.03 5.03 Total: -1.00 -32.40 333.72 -7.49 -39.89 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.37 Total: 5.30 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.91 Total: -8.02 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.20 Total: -37.13 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.21 Total: -24.48 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -4.23 Total: 19.43 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.40 -7.49 -39.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847284.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.639 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds