Wall clock time and date at job start Tue Mar 31 2020 06:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37959 * 120.06991 * 2 1 4 4 C 1.38367 * 120.13919 * 180.27762 * 3 2 1 5 5 C 1.38359 * 120.29460 * 359.74497 * 4 3 2 6 6 C 1.37959 * 120.14299 * 359.97350 * 5 4 3 7 7 C 1.50699 * 120.07142 * 180.02562 * 6 5 4 8 8 C 1.39570 * 119.85227 * 0.02807 * 6 5 4 9 9 C 1.47852 * 120.14176 * 179.97438 * 8 6 5 10 10 O 1.21555 * 119.99292 * 90.00206 * 9 8 6 11 11 N 1.34765 * 120.00270 * 269.99927 * 9 8 6 12 12 C 1.47485 * 125.59513 * 359.92982 * 11 9 8 13 13 C 1.54323 * 107.03985 * 181.08450 * 12 11 9 14 14 C 1.55156 * 103.09857 * 22.23947 * 13 12 11 15 15 O 1.42903 * 111.00391 * 82.48633 * 14 13 12 16 16 C 1.50705 * 111.00550 * 206.29451 * 14 13 12 17 17 H 1.07998 * 119.99787 * 24.82983 * 16 14 13 18 18 C 1.37878 * 119.99951 * 204.83178 * 16 14 13 19 19 N 1.31512 * 119.99773 * 173.53226 * 18 16 14 20 20 Si 1.86799 * 120.00086 * 353.52844 * 18 16 14 21 21 H 1.48502 * 109.46882 * 87.32230 * 20 18 16 22 22 H 1.48494 * 109.47070 * 207.32063 * 20 18 16 23 23 H 1.48497 * 109.47359 * 327.32654 * 20 18 16 24 24 C 1.47429 * 125.65045 * 180.02562 * 11 9 8 25 25 H 1.08997 * 109.47386 * 270.25535 * 1 2 3 26 26 H 1.09002 * 109.47585 * 30.25717 * 1 2 3 27 27 H 1.09004 * 109.47419 * 150.25256 * 1 2 3 28 28 H 1.07994 * 119.93217 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.84926 * 179.72340 * 4 3 2 30 30 H 1.08001 * 119.92607 * 180.02562 * 5 4 3 31 31 H 1.08998 * 109.47259 * 269.98070 * 7 6 5 32 32 H 1.09004 * 109.47034 * 29.98324 * 7 6 5 33 33 H 1.08999 * 109.47140 * 149.98532 * 7 6 5 34 34 H 1.09005 * 110.03266 * 61.72170 * 12 11 9 35 35 H 1.08996 * 109.96496 * 300.41366 * 12 11 9 36 36 H 1.09001 * 110.72110 * 263.79273 * 13 12 11 37 37 H 1.09000 * 110.71783 * 140.69093 * 13 12 11 38 38 H 0.96703 * 114.00656 * 56.20157 * 15 14 13 39 39 H 0.96997 * 119.99955 * 179.97438 * 19 18 16 40 40 H 1.08995 * 110.36486 * 36.98677 * 24 11 9 41 41 H 1.09002 * 110.36629 * 274.67131 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1939 0.0000 4 6 3.5819 1.1956 -0.0058 5 6 4.2813 0.0018 -0.0063 6 6 3.6021 -1.1990 -0.0005 7 6 4.3655 -2.4983 -0.0005 8 6 2.2064 -1.2078 0.0053 9 6 1.4721 -2.4910 0.0110 10 8 1.1746 -3.0162 1.0661 11 7 1.1325 -3.0783 -1.1534 12 6 1.4283 -2.5515 -2.4989 13 6 0.8258 -3.5438 -3.5156 14 6 -0.2640 -4.2761 -2.6888 15 8 -1.4699 -3.5110 -2.6394 16 6 -0.5246 -5.6546 -3.2395 17 1 0.2419 -6.1641 -3.8044 18 6 -1.7416 -6.2650 -3.0220 19 7 -2.0165 -7.4103 -3.6071 20 14 -2.9997 -5.4655 -1.8963 21 1 -3.8318 -4.5166 -2.6789 22 1 -3.8690 -6.5128 -1.3026 23 1 -2.2985 -4.7313 -0.8126 24 6 0.4027 -4.3517 -1.2929 25 1 -0.3634 0.0046 1.0276 26 1 -0.3634 0.8877 -0.5178 27 1 -0.3634 -0.8922 -0.5099 28 1 1.6583 2.1292 0.0004 29 1 4.1183 2.1330 -0.0103 30 1 5.3613 0.0101 -0.0104 31 1 4.5450 -2.8143 -1.0281 32 1 5.3192 -2.3594 0.5088 33 1 3.7845 -3.2611 0.5179 34 1 2.5064 -2.4812 -2.6437 35 1 0.9708 -1.5700 -2.6231 36 1 1.5829 -4.2465 -3.8637 37 1 0.3798 -3.0118 -4.3559 38 1 -1.8286 -3.2854 -3.5086 39 1 -2.8725 -7.8400 -3.4538 40 1 -0.3552 -4.4417 -0.5147 41 1 1.0949 -5.1925 -1.2483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847284.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:58 Heat of formation + Delta-G solvation = -85.282221 kcal Electronic energy + Delta-G solvation = -23886.388614 eV Core-core repulsion = 20536.846017 eV Total energy + Delta-G solvation = -3349.542597 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -41.66700 -40.05942 -38.87325 -36.38141 -34.60895 -34.50111 -33.19859 -31.71944 -30.20423 -28.83790 -27.61999 -27.04021 -24.74979 -23.30669 -21.71068 -21.62066 -20.46096 -19.49912 -18.56742 -17.39960 -17.26186 -16.96325 -16.45534 -16.27827 -15.93244 -15.53350 -14.97856 -14.87745 -14.74792 -14.42000 -14.15422 -13.97501 -13.92720 -13.82746 -13.66919 -13.58672 -13.22304 -12.92891 -12.61739 -12.57952 -12.47005 -12.37257 -12.17239 -12.01062 -12.00138 -11.31537 -11.06457 -10.70211 -10.36758 -9.76445 -9.70370 -9.55837 -8.39741 -6.51841 0.16264 0.37383 1.40135 1.44793 1.48581 1.68087 1.97254 2.38839 2.70054 2.92816 3.33278 3.53112 3.76592 3.78146 3.82389 4.03840 4.18838 4.22587 4.36822 4.37525 4.44535 4.50288 4.59465 4.60129 4.66414 4.70741 4.80987 4.81577 4.87226 4.90321 5.08973 5.13136 5.19541 5.23393 5.26761 5.47734 5.49466 5.51158 5.56271 6.00398 6.04047 6.47471 6.56847 6.96516 7.00526 7.28359 8.72813 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025866 B = 0.005069 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.260104 B = 5522.443683 C = 5807.722087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.063 4.063 3 C -0.125 4.125 4 C -0.091 4.091 5 C -0.124 4.124 6 C -0.062 4.062 7 C -0.120 4.120 8 C -0.143 4.143 9 C 0.575 3.425 10 O -0.596 6.596 11 N -0.604 5.604 12 C 0.112 3.888 13 C -0.137 4.137 14 C 0.219 3.781 15 O -0.564 6.564 16 C -0.543 4.543 17 H 0.057 0.943 18 C 0.034 3.966 19 N -0.929 5.929 20 Si 0.998 3.002 21 H -0.272 1.272 22 H -0.338 1.338 23 H -0.284 1.284 24 C 0.115 3.885 25 H 0.067 0.933 26 H 0.101 0.899 27 H 0.041 0.959 28 H 0.154 0.846 29 H 0.163 0.837 30 H 0.157 0.843 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.035 0.965 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.386 0.614 39 H 0.268 0.732 40 H 0.042 0.958 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.437 20.716 2.126 24.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.064 4.064 3 C -0.143 4.143 4 C -0.108 4.108 5 C -0.142 4.142 6 C -0.063 4.063 7 C -0.177 4.177 8 C -0.145 4.145 9 C 0.365 3.635 10 O -0.478 6.478 11 N -0.335 5.335 12 C -0.010 4.010 13 C -0.175 4.175 14 C 0.178 3.822 15 O -0.374 6.374 16 C -0.581 4.581 17 H 0.075 0.925 18 C -0.167 4.167 19 N -0.567 5.567 20 Si 0.834 3.166 21 H -0.199 1.199 22 H -0.270 1.270 23 H -0.211 1.211 24 C -0.008 4.008 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.060 0.940 28 H 0.172 0.828 29 H 0.180 0.820 30 H 0.174 0.826 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.054 0.946 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.121 0.879 38 H 0.236 0.764 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.300 20.273 3.293 23.940 hybrid contribution -1.203 -0.836 0.095 1.468 sum 11.097 19.437 3.388 22.637 Atomic orbital electron populations 1.20875 0.91144 1.03240 1.02484 1.20036 0.96153 0.92170 0.97991 1.21267 0.95071 0.96958 1.01014 1.21689 0.93813 0.99245 0.96095 1.21286 1.01369 0.90665 1.00887 1.20067 0.90978 0.97390 0.97833 1.20888 1.00439 0.93148 1.03209 1.19606 0.94423 0.91660 1.08852 1.18525 0.78116 0.84826 0.82035 1.90734 1.57812 1.66946 1.32301 1.48823 1.54981 1.23046 1.06626 1.22221 1.00892 0.97860 0.80022 1.23178 0.98818 0.97779 0.97708 1.20043 0.82405 0.89079 0.90680 1.86094 1.41851 1.73783 1.35647 1.21417 1.00553 1.01122 1.35026 0.92487 1.25718 1.00496 0.94823 0.95641 1.70047 1.24406 1.18709 1.43512 0.84867 0.77455 0.74847 0.79453 1.19879 1.27049 1.21109 1.22618 0.94275 0.85232 0.98685 0.91460 0.88078 0.94027 0.82818 0.81955 0.82561 0.89793 0.88400 0.94625 0.89783 0.90364 0.90094 0.87925 0.76395 0.92347 0.93983 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.62 71.24 0.69 -2.48 16 2 C -0.06 -1.62 5.91 -19.61 -0.12 -1.74 16 3 C -0.13 -2.26 9.69 22.23 0.22 -2.04 16 4 C -0.09 -1.33 10.04 22.33 0.22 -1.11 16 5 C -0.12 -2.14 9.69 22.23 0.22 -1.92 16 6 C -0.06 -1.53 5.91 -19.61 -0.12 -1.64 16 7 C -0.12 -2.81 9.62 71.24 0.69 -2.12 16 8 C -0.14 -4.35 4.81 -20.09 -0.10 -4.45 16 9 C 0.57 22.63 4.22 86.79 0.37 22.99 16 10 O -0.60 -28.93 17.36 -3.89 -0.07 -28.99 16 11 N -0.60 -23.02 3.34 -814.06 -2.72 -25.74 16 12 C 0.11 3.31 6.51 86.64 0.56 3.87 16 13 C -0.14 -4.45 6.10 31.78 0.19 -4.26 16 14 C 0.22 9.40 0.70 -10.16 -0.01 9.39 16 15 O -0.56 -23.48 8.51 -148.98 -1.27 -24.75 16 16 C -0.54 -28.66 8.89 25.60 0.23 -28.43 16 17 H 0.06 3.26 7.99 -2.91 -0.02 3.24 16 18 C 0.03 1.92 5.46 84.66 0.46 2.38 16 19 N -0.93 -56.02 13.96 21.45 0.30 -55.72 16 20 Si 1.00 50.15 24.91 68.60 1.71 51.86 16 21 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.34 -17.57 7.11 99.48 0.71 -16.86 16 23 H -0.28 -14.92 5.40 99.48 0.54 -14.38 16 24 C 0.11 5.20 5.88 86.84 0.51 5.71 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.10 1.93 8.09 -2.39 -0.02 1.91 16 27 H 0.04 1.34 7.08 -2.39 -0.02 1.33 16 28 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 29 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 30 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.10 1.68 8.09 -2.39 -0.02 1.66 16 33 H 0.03 1.07 7.08 -2.39 -0.02 1.06 16 34 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.08 2.65 7.98 -2.39 -0.02 2.63 16 37 H 0.10 2.80 8.12 -2.39 -0.02 2.78 16 38 H 0.39 13.19 8.99 -74.06 -0.67 12.53 16 39 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.04 2.18 6.48 -2.39 -0.02 2.17 16 41 H 0.07 3.24 8.03 -2.39 -0.02 3.22 16 Total: -1.00 -75.12 333.72 2.17 -72.95 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.20 Total: 16.25 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 4.01 Total: -5.85 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -2.42 Total: -81.46 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -1.34 Total: -53.75 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 1.71 Total: 51.86 kcal Total: -75.12 2.17 -72.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847284.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.336 kcal (2) G-P(sol) polarization free energy of solvation -75.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds