Wall clock time and date at job start Tue Mar 31 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 110.66904 * 2 1 4 4 C 1.54701 * 110.75488 * 123.23203 * 2 1 3 5 5 C 1.51673 * 101.90886 * 93.12852 * 4 2 1 6 6 C 1.37704 * 132.12640 * 195.60367 * 5 4 2 7 7 C 1.38598 * 120.32096 * 178.82426 * 6 5 4 8 8 C 1.37825 * 119.97461 * 0.55459 * 7 6 5 9 9 C 1.39496 * 120.18457 * 359.62861 * 8 7 6 10 10 C 1.47534 * 120.05288 * 180.29404 * 9 8 7 11 11 O 1.21590 * 120.00475 * 180.02562 * 10 9 8 12 12 N 1.34783 * 120.00306 * 0.02562 * 10 9 8 13 13 C 1.46491 * 120.00302 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47116 * 179.97438 * 13 12 10 15 15 C 1.50708 * 109.47054 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00052 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99825 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00169 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99889 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47215 * 60.00344 * 19 17 15 21 21 H 1.48504 * 109.47329 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47517 * 300.00540 * 19 17 15 23 23 C 1.38836 * 106.99931 * 15.13222 * 5 4 2 24 24 O 1.35857 * 111.30885 * 1.42506 * 23 5 4 25 25 H 1.09001 * 109.47500 * 296.76584 * 1 2 3 26 26 H 1.09007 * 109.47597 * 56.76568 * 1 2 3 27 27 H 1.08998 * 109.47180 * 176.76564 * 1 2 3 28 28 H 1.09003 * 109.46764 * 183.23473 * 3 2 1 29 29 H 1.08998 * 109.46987 * 303.23504 * 3 2 1 30 30 H 1.09004 * 109.47133 * 63.23311 * 3 2 1 31 31 H 1.09001 * 110.94934 * 334.97014 * 4 2 1 32 32 H 1.09007 * 110.94410 * 211.27809 * 4 2 1 33 33 H 1.08003 * 119.83749 * 359.11447 * 6 5 4 34 34 H 1.08002 * 120.01467 * 180.27794 * 7 6 5 35 35 H 1.08002 * 119.91081 * 179.91442 * 8 7 6 36 36 H 0.97000 * 119.99704 * 359.97438 * 12 10 9 37 37 H 1.09000 * 109.47093 * 299.99838 * 13 12 10 38 38 H 1.09009 * 109.47231 * 59.99611 * 13 12 10 39 39 H 1.08995 * 109.47411 * 299.99659 * 14 13 12 40 40 H 1.09004 * 109.46988 * 60.00427 * 14 13 12 41 41 H 0.97000 * 120.00483 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0700 1.4316 0.0000 4 6 2.0782 -0.7928 1.2100 5 6 2.2649 -2.1770 0.6187 6 6 2.4527 -3.4116 1.1989 7 6 2.5748 -4.5444 0.4096 8 6 2.5196 -4.4362 -0.9633 9 6 2.3334 -3.1900 -1.5617 10 6 2.2683 -3.0785 -3.0314 11 8 2.1065 -1.9917 -3.5522 12 7 2.3883 -4.1813 -3.7970 13 6 2.3231 -4.0706 -5.2562 14 6 2.4864 -5.4578 -5.8807 15 6 2.4187 -5.3440 -7.3820 16 1 2.2742 -4.3789 -7.8444 17 6 2.5413 -6.4722 -8.1650 18 7 2.7169 -7.6476 -7.6019 19 14 2.4567 -6.3313 -10.0257 20 1 3.5453 -5.4421 -10.5048 21 1 2.6141 -7.6778 -10.6318 22 1 1.1431 -5.7620 -10.4199 23 6 2.2075 -2.0398 -0.7616 24 8 2.0394 -0.7408 -1.1221 25 1 -0.3634 0.4628 0.9175 26 1 -0.3634 0.5632 -0.8596 27 1 -0.3633 -1.0260 -0.0580 28 1 3.1583 1.4093 -0.0580 29 1 1.6713 1.9703 -0.8596 30 1 1.7652 1.9349 0.9176 31 1 1.3538 -0.8114 2.0243 32 1 3.0299 -0.3814 1.5466 33 1 2.5006 -3.4983 2.2744 34 1 2.7175 -5.5108 0.8701 35 1 2.6162 -5.3194 -1.5773 36 1 2.5178 -5.0482 -3.3816 37 1 1.3592 -3.6524 -5.5462 38 1 3.1227 -3.4181 -5.6073 39 1 3.4505 -5.8756 -5.5908 40 1 1.6871 -6.1106 -5.5298 41 1 2.8035 -8.4413 -8.1528 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594004108.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:53 Heat of formation + Delta-G solvation = -56.315755 kcal Electronic energy + Delta-G solvation = -22434.415479 eV Core-core repulsion = 19086.128962 eV Total energy + Delta-G solvation = -3348.286516 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.55316 -39.14546 -37.44130 -34.81920 -33.94813 -32.89101 -31.83897 -30.52391 -29.26079 -27.73448 -26.77658 -25.07337 -23.18664 -22.16400 -21.01473 -20.76799 -19.90179 -17.49361 -17.14135 -16.42119 -16.16518 -15.84551 -15.13615 -14.93842 -14.73408 -14.45917 -14.08326 -13.97561 -13.68748 -13.24523 -13.08013 -12.89078 -12.58620 -12.46570 -12.27025 -12.26489 -11.96375 -11.86168 -11.54037 -11.16889 -11.09434 -10.99302 -10.87467 -10.63243 -10.28373 -9.75834 -9.42115 -9.16134 -9.04488 -8.49451 -8.33747 -8.19377 -6.06857 -4.09485 0.82929 1.19814 2.99829 3.12631 3.33372 3.36792 3.40089 3.70565 3.89656 4.13520 4.22862 4.44144 4.53578 4.66365 4.73864 4.91382 4.98262 5.13000 5.21599 5.26041 5.30124 5.33122 5.36168 5.49397 5.51686 5.63086 5.73498 5.86777 5.93672 6.07381 6.14449 6.25678 6.40410 6.42496 6.48538 6.78735 6.98003 7.10416 7.55006 7.65116 7.91625 8.07906 8.31371 8.73892 8.96336 9.55095 11.04809 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027159 B = 0.003149 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.729632 B = 8889.980961 C = 9706.635831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 C -0.140 4.140 4 C -0.098 4.098 5 C -0.190 4.190 6 C -0.050 4.050 7 C -0.158 4.158 8 C -0.053 4.053 9 C -0.152 4.152 10 C 0.547 3.453 11 O -0.534 6.534 12 N -0.720 5.720 13 C 0.123 3.877 14 C 0.013 3.987 15 C -0.522 4.522 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.169 3.831 24 O -0.266 6.266 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.395 0.605 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.023 0.977 40 H 0.022 0.978 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.816 11.009 23.050 25.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 C -0.197 4.197 4 C -0.135 4.135 5 C -0.191 4.191 6 C -0.069 4.069 7 C -0.176 4.176 8 C -0.072 4.072 9 C -0.156 4.156 10 C 0.333 3.667 11 O -0.412 6.412 12 N -0.370 5.370 13 C 0.001 3.999 14 C -0.025 4.025 15 C -0.560 4.560 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 C 0.121 3.879 24 O -0.179 6.179 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.230 0.770 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.881 11.739 22.368 25.331 hybrid contribution 0.033 -0.617 -0.693 0.929 sum -1.848 11.122 21.675 24.431 Atomic orbital electron populations 1.22193 0.93282 1.03335 1.03082 1.22843 0.94617 0.93213 0.83771 1.21823 1.02117 0.92628 1.03160 1.21885 1.02557 0.90915 0.98143 1.20770 1.09030 0.95798 0.93503 1.20424 0.96070 0.90433 0.99945 1.20947 1.04745 0.98672 0.93224 1.21186 0.95020 0.95621 0.95354 1.19479 1.11323 0.91153 0.93601 1.18082 0.77770 0.84850 0.85986 1.90792 1.49171 1.26814 1.74435 1.46244 1.72848 1.09118 1.08830 1.21726 1.00829 1.01461 0.75914 1.19325 0.97725 0.89621 0.95800 1.21025 1.50275 0.93865 0.90861 0.92276 1.24989 0.94997 0.95257 0.99021 1.69941 1.49482 0.98312 1.35646 0.86569 0.78781 0.77105 0.85061 1.20102 1.21255 1.20111 1.19433 0.91871 0.84819 0.91756 1.87087 1.78315 1.15557 1.36926 0.90799 0.91033 0.91831 0.91339 0.91024 0.90410 0.89019 0.89051 0.85571 0.84850 0.84471 0.77048 0.92511 0.92500 0.95916 0.95925 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 8.86 37.16 0.33 -1.20 16 2 C 0.09 0.99 1.26 -89.72 -0.11 0.88 16 3 C -0.14 -1.16 8.95 37.16 0.33 -0.83 16 4 C -0.10 -0.87 6.18 -26.51 -0.16 -1.03 16 5 C -0.19 -2.20 6.26 -104.12 -0.65 -2.85 16 6 C -0.05 -0.49 10.02 -39.64 -0.40 -0.89 16 7 C -0.16 -1.58 10.05 -39.60 -0.40 -1.98 16 8 C -0.05 -0.66 9.51 -39.26 -0.37 -1.03 16 9 C -0.15 -2.41 5.89 -104.72 -0.62 -3.03 16 10 C 0.55 10.69 7.76 -12.47 -0.10 10.59 16 11 O -0.53 -12.42 15.87 -10.27 -0.16 -12.58 16 12 N -0.72 -13.65 5.50 -61.35 -0.34 -13.98 16 13 C 0.12 2.75 5.61 -4.05 -0.02 2.72 16 14 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 15 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 19 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.17 2.58 6.59 -38.44 -0.25 2.32 16 24 O -0.27 -4.23 9.56 -34.85 -0.33 -4.57 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.06 0.68 8.07 -51.93 -0.42 0.26 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.60 7.92 -51.93 -0.41 0.19 16 32 H 0.09 0.70 7.93 -51.93 -0.41 0.29 16 33 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.14 1.47 6.37 -52.49 -0.33 1.13 16 36 H 0.39 6.39 6.48 -40.82 -0.26 6.13 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 343.90 15.07 5.18 5.18 Total: -1.00 -34.32 343.90 -8.95 -43.27 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.03 Total: 1.30 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -2.98 Total: -9.61 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.40 Total: -39.62 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.50 Total: -17.15 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.32 -8.95 -43.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594004108.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.049 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds