Wall clock time and date at job start Tue Mar 31 2020 05:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 110.66904 * 2 1 4 4 C 1.54701 * 110.75488 * 123.23203 * 2 1 3 5 5 C 1.51673 * 101.90886 * 93.12852 * 4 2 1 6 6 C 1.37704 * 132.12640 * 195.60367 * 5 4 2 7 7 C 1.38598 * 120.32096 * 178.82426 * 6 5 4 8 8 C 1.37825 * 119.97461 * 0.55459 * 7 6 5 9 9 C 1.39496 * 120.18457 * 359.62861 * 8 7 6 10 10 C 1.47534 * 120.05288 * 180.29404 * 9 8 7 11 11 O 1.21590 * 120.00475 * 180.02562 * 10 9 8 12 12 N 1.34783 * 120.00306 * 0.02562 * 10 9 8 13 13 C 1.46491 * 120.00302 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47116 * 179.97438 * 13 12 10 15 15 C 1.50708 * 109.47054 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00052 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99825 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00169 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99889 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47215 * 60.00344 * 19 17 15 21 21 H 1.48504 * 109.47329 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47517 * 300.00540 * 19 17 15 23 23 C 1.38836 * 106.99931 * 15.13222 * 5 4 2 24 24 O 1.35857 * 111.30885 * 1.42506 * 23 5 4 25 25 H 1.09001 * 109.47500 * 296.76584 * 1 2 3 26 26 H 1.09007 * 109.47597 * 56.76568 * 1 2 3 27 27 H 1.08998 * 109.47180 * 176.76564 * 1 2 3 28 28 H 1.09003 * 109.46764 * 183.23473 * 3 2 1 29 29 H 1.08998 * 109.46987 * 303.23504 * 3 2 1 30 30 H 1.09004 * 109.47133 * 63.23311 * 3 2 1 31 31 H 1.09001 * 110.94934 * 334.97014 * 4 2 1 32 32 H 1.09007 * 110.94410 * 211.27809 * 4 2 1 33 33 H 1.08003 * 119.83749 * 359.11447 * 6 5 4 34 34 H 1.08002 * 120.01467 * 180.27794 * 7 6 5 35 35 H 1.08002 * 119.91081 * 179.91442 * 8 7 6 36 36 H 0.97000 * 119.99704 * 359.97438 * 12 10 9 37 37 H 1.09000 * 109.47093 * 299.99838 * 13 12 10 38 38 H 1.09009 * 109.47231 * 59.99611 * 13 12 10 39 39 H 1.08995 * 109.47411 * 299.99659 * 14 13 12 40 40 H 1.09004 * 109.46988 * 60.00427 * 14 13 12 41 41 H 0.97000 * 120.00483 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0700 1.4316 0.0000 4 6 2.0782 -0.7928 1.2100 5 6 2.2649 -2.1770 0.6187 6 6 2.4527 -3.4116 1.1989 7 6 2.5748 -4.5444 0.4096 8 6 2.5196 -4.4362 -0.9633 9 6 2.3334 -3.1900 -1.5617 10 6 2.2683 -3.0785 -3.0314 11 8 2.1065 -1.9917 -3.5522 12 7 2.3883 -4.1813 -3.7970 13 6 2.3231 -4.0706 -5.2562 14 6 2.4864 -5.4578 -5.8807 15 6 2.4187 -5.3440 -7.3820 16 1 2.2742 -4.3789 -7.8444 17 6 2.5413 -6.4722 -8.1650 18 7 2.7169 -7.6476 -7.6019 19 14 2.4567 -6.3313 -10.0257 20 1 3.5453 -5.4421 -10.5048 21 1 2.6141 -7.6778 -10.6318 22 1 1.1431 -5.7620 -10.4199 23 6 2.2075 -2.0398 -0.7616 24 8 2.0394 -0.7408 -1.1221 25 1 -0.3634 0.4628 0.9175 26 1 -0.3634 0.5632 -0.8596 27 1 -0.3633 -1.0260 -0.0580 28 1 3.1583 1.4093 -0.0580 29 1 1.6713 1.9703 -0.8596 30 1 1.7652 1.9349 0.9176 31 1 1.3538 -0.8114 2.0243 32 1 3.0299 -0.3814 1.5466 33 1 2.5006 -3.4983 2.2744 34 1 2.7175 -5.5108 0.8701 35 1 2.6162 -5.3194 -1.5773 36 1 2.5178 -5.0482 -3.3816 37 1 1.3592 -3.6524 -5.5462 38 1 3.1227 -3.4181 -5.6073 39 1 3.4505 -5.8756 -5.5908 40 1 1.6871 -6.1106 -5.5298 41 1 2.8035 -8.4413 -8.1528 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594004108.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:52 Heat of formation + Delta-G solvation = -77.900512 kcal Electronic energy + Delta-G solvation = -22435.351464 eV Core-core repulsion = 19086.128962 eV Total energy + Delta-G solvation = -3349.222502 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.47327 -40.60332 -38.44446 -36.64486 -34.87952 -34.81168 -32.92675 -31.69771 -30.88577 -28.42904 -27.55292 -26.96036 -24.56980 -23.08675 -22.82240 -21.65799 -21.27743 -18.71949 -18.55066 -18.04699 -17.28759 -16.85231 -16.53108 -16.38604 -16.30730 -15.92430 -15.20260 -14.89698 -14.84058 -14.69068 -14.31767 -14.09370 -13.70994 -13.58263 -13.24175 -13.22104 -12.95276 -12.93827 -12.79957 -12.67114 -12.55962 -12.37160 -12.26585 -11.85464 -11.70291 -11.67534 -11.49390 -10.88320 -10.61821 -10.19133 -9.86509 -9.17527 -8.25523 -6.36384 -0.17986 0.30028 1.40515 1.43237 1.51246 1.83676 2.18296 2.22051 2.43442 2.77678 3.08842 3.37680 3.46417 3.71939 3.82717 3.93682 4.01145 4.15651 4.26583 4.38666 4.43531 4.50570 4.61974 4.67158 4.68682 4.73898 4.79621 4.84250 4.92389 4.96316 5.15746 5.18027 5.23207 5.23820 5.32710 5.39157 5.45505 5.54348 5.70431 5.75727 6.13751 6.19584 6.57115 6.75655 7.21555 7.32688 8.86285 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027159 B = 0.003149 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.729632 B = 8889.980961 C = 9706.635831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.077 3.923 3 C -0.137 4.137 4 C -0.088 4.088 5 C -0.190 4.190 6 C -0.036 4.036 7 C -0.148 4.148 8 C -0.058 4.058 9 C -0.188 4.188 10 C 0.544 3.456 11 O -0.583 6.583 12 N -0.713 5.713 13 C 0.142 3.858 14 C 0.025 3.975 15 C -0.551 4.551 16 H 0.057 0.943 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.966 3.034 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.269 1.269 23 C 0.139 3.861 24 O -0.310 6.310 25 H 0.110 0.890 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.147 0.853 36 H 0.409 0.591 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.011 0.989 40 H 0.011 0.989 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.807 10.811 25.857 28.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 C -0.194 4.194 4 C -0.125 4.125 5 C -0.191 4.191 6 C -0.054 4.054 7 C -0.166 4.166 8 C -0.077 4.077 9 C -0.192 4.192 10 C 0.333 3.667 11 O -0.464 6.464 12 N -0.365 5.365 13 C 0.018 3.982 14 C -0.012 4.012 15 C -0.589 4.589 16 H 0.075 0.925 17 C -0.190 4.190 18 N -0.564 5.564 19 Si 0.790 3.210 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.194 1.194 23 C 0.092 3.908 24 O -0.224 6.224 25 H 0.128 0.872 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.132 0.868 31 H 0.142 0.858 32 H 0.125 0.875 33 H 0.187 0.813 34 H 0.188 0.812 35 H 0.164 0.836 36 H 0.246 0.754 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.870 11.521 25.207 27.778 hybrid contribution 0.027 -0.552 -1.456 1.557 sum -1.843 10.970 23.751 26.227 Atomic orbital electron populations 1.22202 0.92835 1.02290 1.04242 1.23283 0.95192 0.94036 0.83478 1.21870 1.01613 0.91543 1.04394 1.21958 1.04083 0.88669 0.97759 1.21190 1.08128 0.97875 0.91886 1.20969 0.93114 0.89217 1.02077 1.21404 1.02651 1.00588 0.91940 1.21381 0.94940 0.94410 0.96979 1.19379 1.15435 0.93426 0.90981 1.18762 0.76195 0.83820 0.87877 1.90746 1.51484 1.28462 1.75751 1.46033 1.72983 1.10120 1.07362 1.21248 0.99606 0.99310 0.78041 1.19121 0.96420 0.90660 0.95017 1.21426 1.50900 0.94142 0.92453 0.92466 1.25866 0.94272 0.94779 1.04110 1.70042 1.49832 0.99001 1.37554 0.85486 0.79088 0.77513 0.78888 1.19388 1.20295 1.19380 1.19809 0.92949 0.84511 0.93563 1.87039 1.78923 1.16448 1.39986 0.87187 0.92602 0.93576 0.91927 0.92376 0.86843 0.85835 0.87505 0.81267 0.81204 0.83577 0.75410 0.93742 0.93780 0.97114 0.97096 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 8.86 71.98 0.64 -2.25 16 2 C 0.08 1.58 1.26 -10.21 -0.01 1.56 16 3 C -0.14 -2.15 8.95 71.98 0.64 -1.50 16 4 C -0.09 -1.29 6.18 30.74 0.19 -1.10 16 5 C -0.19 -3.95 6.26 -19.54 -0.12 -4.07 16 6 C -0.04 -0.55 10.02 22.23 0.22 -0.32 16 7 C -0.15 -2.45 10.05 22.26 0.22 -2.23 16 8 C -0.06 -1.39 9.51 22.48 0.21 -1.18 16 9 C -0.19 -6.18 5.89 -19.93 -0.12 -6.30 16 10 C 0.54 22.59 7.76 86.69 0.67 23.27 16 11 O -0.58 -29.15 15.87 10.88 0.17 -28.98 16 12 N -0.71 -28.47 5.50 -466.27 -2.57 -31.04 16 13 C 0.14 6.68 5.61 86.38 0.48 7.16 16 14 C 0.03 1.33 5.09 29.85 0.15 1.48 16 15 C -0.55 -31.87 9.11 25.60 0.23 -31.64 16 16 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 17 C 0.01 0.50 5.46 84.65 0.46 0.96 16 18 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16 19 Si 0.97 44.52 29.54 68.60 2.03 46.54 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 C 0.14 4.30 6.59 23.01 0.15 4.46 16 24 O -0.31 -10.31 9.56 -77.07 -0.74 -11.04 16 25 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.05 0.98 8.07 -2.39 -0.02 0.96 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.12 1.02 7.92 -2.39 -0.02 1.00 16 32 H 0.11 1.25 7.93 -2.38 -0.02 1.23 16 33 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 34 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 35 H 0.15 3.03 6.37 -2.91 -0.02 3.01 16 36 H 0.41 13.76 6.48 -92.71 -0.60 13.16 16 37 H 0.04 2.18 8.14 -2.39 -0.02 2.17 16 38 H 0.04 2.17 8.14 -2.38 -0.02 2.15 16 39 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.01 0.58 8.14 -2.39 -0.02 0.57 16 41 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -78.78 343.90 3.65 -75.14 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.43 Total: 15.76 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 4.04 Total: -11.69 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -2.28 Total: -85.73 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -0.56 Total: -40.02 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -78.78 3.65 -75.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594004108.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.765 kcal (2) G-P(sol) polarization free energy of solvation -78.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds