Wall clock time and date at job start Tue Mar 31 2020 05:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 119.99745 * 2 1 4 4 C 1.50704 * 109.47319 * 269.99725 * 3 2 1 5 5 H 1.08006 * 119.99824 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00258 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00200 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00299 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47016 * 59.99385 * 8 6 4 10 10 H 1.48493 * 109.47575 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46675 * 299.99663 * 8 6 4 12 12 C 1.34778 * 119.99896 * 180.02562 * 2 1 3 13 13 O 1.21585 * 120.00078 * 184.40202 * 12 2 1 14 14 C 1.47538 * 120.00004 * 4.39468 * 12 2 1 15 15 C 1.39525 * 120.05719 * 311.06564 * 14 12 2 16 16 C 1.37783 * 120.18711 * 180.24569 * 15 14 12 17 17 C 1.38646 * 119.97842 * 359.63594 * 16 15 14 18 18 C 1.37656 * 120.31290 * 0.54811 * 17 16 15 19 19 C 1.38880 * 120.87688 * 359.35226 * 18 17 16 20 20 O 1.35859 * 111.29907 * 181.01599 * 19 18 17 21 21 C 1.43781 * 109.23700 * 340.66555 * 20 19 18 22 22 C 1.52993 * 110.75639 * 269.55362 * 21 20 19 23 23 C 1.53007 * 110.91046 * 146.26554 * 21 20 19 24 24 C 1.51675 * 132.12705 * 178.82532 * 18 17 16 25 25 H 1.08999 * 109.47406 * 273.00501 * 1 2 3 26 26 H 1.09002 * 109.46980 * 33.00386 * 1 2 3 27 27 H 1.08999 * 109.47148 * 153.00015 * 1 2 3 28 28 H 1.08994 * 109.47518 * 29.99776 * 3 2 1 29 29 H 1.09000 * 109.46829 * 150.00407 * 3 2 1 30 30 H 0.96992 * 120.00244 * 179.97438 * 7 6 4 31 31 H 1.08006 * 119.90798 * 359.97016 * 15 14 12 32 32 H 1.08007 * 120.01151 * 179.90403 * 16 15 14 33 33 H 1.07994 * 119.84519 * 180.25665 * 17 16 15 34 34 H 1.09002 * 109.47162 * 173.33927 * 22 21 20 35 35 H 1.08999 * 109.47573 * 293.34699 * 22 21 20 36 36 H 1.09009 * 109.46716 * 53.34084 * 22 21 20 37 37 H 1.09008 * 109.46632 * 306.56879 * 23 21 20 38 38 H 1.08994 * 109.47065 * 66.56343 * 23 21 20 39 39 H 1.08993 * 109.46802 * 186.57244 * 23 21 20 40 40 H 1.08994 * 110.94580 * 313.76231 * 24 18 17 41 41 H 1.09000 * 110.94003 * 77.45813 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0961 -2.2418 6 6 3.1268 2.8774 -1.6728 7 7 3.5541 3.6176 -0.6732 8 14 3.4376 3.4171 -3.4340 9 1 2.1398 3.5953 -4.1334 10 1 4.1801 4.7030 -3.4340 11 1 4.2395 2.3819 -4.1346 12 6 2.1389 -1.1672 -0.0005 13 8 3.3521 -1.1689 0.0803 14 6 1.4044 -2.4430 -0.0990 15 6 0.3101 -2.6853 0.7319 16 6 -0.3746 -3.8779 0.6457 17 6 0.0190 -4.8378 -0.2740 18 6 1.0995 -4.6106 -1.0960 19 6 1.8059 -3.4166 -1.0311 20 8 2.8158 -3.3907 -1.9394 21 6 3.1177 -4.7350 -2.3506 22 6 4.1949 -5.3475 -1.4533 23 6 3.5511 -4.7730 -3.8176 24 6 1.7658 -5.4626 -2.1593 25 1 -0.3634 0.0539 1.0262 26 1 -0.3633 0.8619 -0.5598 27 1 -0.3633 -0.9156 -0.4665 28 1 1.6084 2.0283 0.5138 29 1 3.1499 1.1383 0.5138 30 1 4.0315 4.4431 -0.8504 31 1 0.0016 -1.9378 1.4479 32 1 -1.2204 -4.0631 1.2914 33 1 -0.5218 -5.7701 -0.3426 34 1 4.3230 -6.4001 -1.7061 35 1 5.1368 -4.8202 -1.6045 36 1 3.8922 -5.2587 -0.4099 37 1 2.7968 -4.2813 -4.4321 38 1 4.5039 -4.2555 -3.9285 39 1 3.6610 -5.8093 -4.1371 40 1 1.9187 -6.4813 -1.8031 41 1 1.1864 -5.4571 -3.0825 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594258359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:55 Heat of formation + Delta-G solvation = -37.501810 kcal Electronic energy + Delta-G solvation = -23456.405912 eV Core-core repulsion = 20108.935229 eV Total energy + Delta-G solvation = -3347.470683 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.36864 -38.97485 -37.19635 -34.73706 -33.80580 -32.64429 -31.55126 -30.20852 -27.71952 -27.54137 -26.62872 -25.78189 -23.78818 -22.08212 -21.73616 -20.64621 -18.75098 -17.14977 -16.59558 -16.41995 -16.10907 -15.49315 -15.21580 -15.08689 -14.34429 -14.25641 -13.90264 -13.78305 -13.17023 -12.98460 -12.76649 -12.72803 -12.33531 -12.20173 -12.09900 -12.09281 -11.83205 -11.74187 -11.57460 -11.23965 -11.14467 -10.92137 -10.81451 -10.68621 -10.50562 -10.10607 -9.59412 -8.97438 -8.68463 -8.37564 -8.06752 -7.56718 -5.98731 -4.03092 1.14196 1.38016 3.19493 3.36063 3.39766 3.41458 3.46129 3.77748 4.14297 4.31178 4.39834 4.50032 4.71213 4.84902 4.91765 5.03288 5.15211 5.31857 5.34464 5.38160 5.41709 5.46958 5.50583 5.67274 5.68061 5.76668 5.80247 5.92488 5.97215 6.05457 6.12641 6.28948 6.30719 6.33102 6.43790 6.67931 7.11177 7.29846 7.50565 7.60587 7.98198 8.29486 8.46358 8.95691 9.15034 9.61617 11.09376 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.005318 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.459842 B = 5263.929740 C = 6337.700975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.596 5.596 3 C 0.245 3.755 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.551 3.449 13 O -0.529 6.529 14 C -0.136 4.136 15 C -0.059 4.059 16 C -0.159 4.159 17 C -0.060 4.060 18 C -0.186 4.186 19 C 0.159 3.841 20 O -0.276 6.276 21 C 0.097 3.903 22 C -0.161 4.161 23 C -0.141 4.141 24 C -0.097 4.097 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.045 0.955 30 H 0.263 0.737 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.192 -20.030 -0.783 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.328 5.328 3 C 0.127 3.873 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.337 3.663 13 O -0.406 6.406 14 C -0.140 4.140 15 C -0.077 4.077 16 C -0.177 4.177 17 C -0.078 4.078 18 C -0.187 4.187 19 C 0.111 3.889 20 O -0.189 6.189 21 C 0.059 3.941 22 C -0.218 4.218 23 C -0.198 4.198 24 C -0.134 4.134 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.292 -19.623 -0.802 20.950 hybrid contribution 0.020 0.333 -0.964 1.020 sum -7.272 -19.291 -1.766 20.691 Atomic orbital electron populations 1.21815 0.81561 1.02718 1.00374 1.48071 1.06175 1.07525 1.71027 1.19304 0.92648 0.77842 0.97553 1.21414 1.36467 1.06253 0.92301 0.92518 1.24921 0.95351 0.96356 0.97412 1.69925 1.38428 1.14391 1.30743 0.86562 0.78363 0.77770 0.84770 1.20257 1.21151 1.20165 1.17981 0.87179 0.83144 0.78025 1.90761 1.13399 1.86951 1.49529 1.19493 0.99778 0.96369 0.98392 1.21164 0.92245 0.97288 0.97012 1.20890 1.01834 0.93962 1.00996 1.20332 0.94559 0.99045 0.93873 1.20727 0.99566 0.96872 1.01491 1.19382 0.87600 0.93363 0.88523 1.87024 1.50105 1.28286 1.53502 1.22801 0.94788 0.80317 0.96194 1.22182 0.99016 1.00620 1.00010 1.21831 1.03080 1.02673 0.92235 1.21873 0.94631 0.99217 0.97717 0.93627 0.90950 0.91929 0.94843 0.93659 0.92702 0.84538 0.85182 0.85840 0.90955 0.90994 0.91746 0.91341 0.90993 0.90459 0.89131 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 9.08 59.85 0.54 1.92 16 2 N -0.60 -13.76 2.86 -184.20 -0.53 -14.29 16 3 C 0.25 6.76 5.21 -5.19 -0.03 6.74 16 4 C -0.53 -15.62 9.39 -34.44 -0.32 -15.94 16 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 6 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 7 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 8 Si 0.90 22.60 29.54 -169.99 -5.02 17.58 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 12 C 0.55 13.01 7.19 -12.47 -0.09 12.92 16 13 O -0.53 -14.85 16.58 5.29 0.09 -14.77 16 14 C -0.14 -2.55 4.92 -104.72 -0.52 -3.07 16 15 C -0.06 -0.83 7.57 -39.27 -0.30 -1.13 16 16 C -0.16 -1.80 10.05 -39.60 -0.40 -2.20 16 17 C -0.06 -0.68 10.02 -39.64 -0.40 -1.07 16 18 C -0.19 -2.52 6.26 -104.12 -0.65 -3.17 16 19 C 0.16 2.83 6.60 -38.44 -0.25 2.58 16 20 O -0.28 -5.22 10.48 -19.30 -0.20 -5.43 16 21 C 0.10 1.27 1.26 -89.72 -0.11 1.15 16 22 C -0.16 -1.90 8.86 37.15 0.33 -1.57 16 23 C -0.14 -1.51 8.95 37.16 0.33 -1.17 16 24 C -0.10 -1.05 6.18 -26.50 -0.16 -1.22 16 25 H 0.05 0.65 7.55 -51.93 -0.39 0.26 16 26 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 27 H 0.06 0.97 5.67 -51.93 -0.29 0.67 16 28 H 0.03 0.91 8.07 -51.93 -0.42 0.50 16 29 H 0.05 1.40 7.36 -51.93 -0.38 1.01 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.14 1.73 6.53 -52.48 -0.34 1.39 16 32 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.85 8.07 -51.92 -0.42 0.43 16 37 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.75 7.92 -51.93 -0.41 0.34 16 41 H 0.09 0.86 7.93 -51.93 -0.41 0.45 16 LS Contribution 341.21 15.07 5.14 5.14 Total: -1.00 -36.37 341.21 -7.90 -44.27 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.00 Total: -2.38 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -2.12 Total: -3.53 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.21 Total: -40.90 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.11 Total: -20.19 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.37 -7.90 -44.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594258359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.769 kcal (2) G-P(sol) polarization free energy of solvation -36.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds