Wall clock time and date at job start Tue Mar 31 2020 05:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 119.99745 * 2 1 4 4 C 1.50704 * 109.47319 * 269.99725 * 3 2 1 5 5 H 1.08006 * 119.99824 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00258 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00200 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00299 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47016 * 59.99385 * 8 6 4 10 10 H 1.48493 * 109.47575 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46675 * 299.99663 * 8 6 4 12 12 C 1.34778 * 119.99896 * 180.02562 * 2 1 3 13 13 O 1.21585 * 120.00078 * 184.40202 * 12 2 1 14 14 C 1.47538 * 120.00004 * 4.39468 * 12 2 1 15 15 C 1.39525 * 120.05719 * 311.06564 * 14 12 2 16 16 C 1.37783 * 120.18711 * 180.24569 * 15 14 12 17 17 C 1.38646 * 119.97842 * 359.63594 * 16 15 14 18 18 C 1.37656 * 120.31290 * 0.54811 * 17 16 15 19 19 C 1.38880 * 120.87688 * 359.35226 * 18 17 16 20 20 O 1.35859 * 111.29907 * 181.01599 * 19 18 17 21 21 C 1.43781 * 109.23700 * 340.66555 * 20 19 18 22 22 C 1.52993 * 110.75639 * 269.55362 * 21 20 19 23 23 C 1.53007 * 110.91046 * 146.26554 * 21 20 19 24 24 C 1.51675 * 132.12705 * 178.82532 * 18 17 16 25 25 H 1.08999 * 109.47406 * 273.00501 * 1 2 3 26 26 H 1.09002 * 109.46980 * 33.00386 * 1 2 3 27 27 H 1.08999 * 109.47148 * 153.00015 * 1 2 3 28 28 H 1.08994 * 109.47518 * 29.99776 * 3 2 1 29 29 H 1.09000 * 109.46829 * 150.00407 * 3 2 1 30 30 H 0.96992 * 120.00244 * 179.97438 * 7 6 4 31 31 H 1.08006 * 119.90798 * 359.97016 * 15 14 12 32 32 H 1.08007 * 120.01151 * 179.90403 * 16 15 14 33 33 H 1.07994 * 119.84519 * 180.25665 * 17 16 15 34 34 H 1.09002 * 109.47162 * 173.33927 * 22 21 20 35 35 H 1.08999 * 109.47573 * 293.34699 * 22 21 20 36 36 H 1.09009 * 109.46716 * 53.34084 * 22 21 20 37 37 H 1.09008 * 109.46632 * 306.56879 * 23 21 20 38 38 H 1.08994 * 109.47065 * 66.56343 * 23 21 20 39 39 H 1.08993 * 109.46802 * 186.57244 * 23 21 20 40 40 H 1.08994 * 110.94580 * 313.76231 * 24 18 17 41 41 H 1.09000 * 110.94003 * 77.45813 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0961 -2.2418 6 6 3.1268 2.8774 -1.6728 7 7 3.5541 3.6176 -0.6732 8 14 3.4376 3.4171 -3.4340 9 1 2.1398 3.5953 -4.1334 10 1 4.1801 4.7030 -3.4340 11 1 4.2395 2.3819 -4.1346 12 6 2.1389 -1.1672 -0.0005 13 8 3.3521 -1.1689 0.0803 14 6 1.4044 -2.4430 -0.0990 15 6 0.3101 -2.6853 0.7319 16 6 -0.3746 -3.8779 0.6457 17 6 0.0190 -4.8378 -0.2740 18 6 1.0995 -4.6106 -1.0960 19 6 1.8059 -3.4166 -1.0311 20 8 2.8158 -3.3907 -1.9394 21 6 3.1177 -4.7350 -2.3506 22 6 4.1949 -5.3475 -1.4533 23 6 3.5511 -4.7730 -3.8176 24 6 1.7658 -5.4626 -2.1593 25 1 -0.3634 0.0539 1.0262 26 1 -0.3633 0.8619 -0.5598 27 1 -0.3633 -0.9156 -0.4665 28 1 1.6084 2.0283 0.5138 29 1 3.1499 1.1383 0.5138 30 1 4.0315 4.4431 -0.8504 31 1 0.0016 -1.9378 1.4479 32 1 -1.2204 -4.0631 1.2914 33 1 -0.5218 -5.7701 -0.3426 34 1 4.3230 -6.4001 -1.7061 35 1 5.1368 -4.8202 -1.6045 36 1 3.8922 -5.2587 -0.4099 37 1 2.7968 -4.2813 -4.4321 38 1 4.5039 -4.2555 -3.9285 39 1 3.6610 -5.8093 -4.1371 40 1 1.9187 -6.4813 -1.8031 41 1 1.1864 -5.4571 -3.0825 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594258359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:55 Heat of formation + Delta-G solvation = -62.210237 kcal Electronic energy + Delta-G solvation = -23457.477349 eV Core-core repulsion = 20108.935229 eV Total energy + Delta-G solvation = -3348.542120 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.46193 -40.62990 -38.39619 -36.66447 -34.90620 -34.74105 -32.71330 -31.38608 -29.67147 -28.44391 -27.73590 -27.27761 -25.64921 -23.51906 -22.92598 -21.63570 -20.34996 -18.75846 -18.21987 -18.07272 -17.44906 -16.89585 -16.62245 -16.36121 -16.09469 -15.84150 -15.04186 -14.78395 -14.57241 -14.29233 -14.19184 -13.88092 -13.69183 -13.62956 -13.49381 -13.23781 -13.11890 -12.95610 -12.89787 -12.77320 -12.66003 -12.52806 -12.28591 -12.24688 -11.84265 -11.78607 -11.63722 -10.73862 -10.69337 -9.83339 -9.51198 -9.13613 -8.27369 -6.42876 0.02283 0.33638 1.30857 1.36295 1.43801 1.78433 2.21517 2.30397 2.40072 2.74610 3.01290 3.39628 3.46600 3.67471 3.81962 3.97891 4.00759 4.19545 4.28459 4.39719 4.46720 4.59985 4.61808 4.66131 4.69458 4.71457 4.82568 4.86958 4.91353 4.94454 4.99688 5.14748 5.15866 5.22510 5.27712 5.37636 5.42986 5.49550 5.76211 5.78194 6.00440 6.22595 6.61927 6.67981 7.20676 7.37737 8.79853 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.005318 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.459842 B = 5263.929740 C = 6337.700975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.603 5.603 3 C 0.260 3.740 4 C -0.548 4.548 5 H 0.045 0.955 6 C 0.010 3.990 7 N -0.926 5.926 8 Si 0.968 3.032 9 H -0.258 1.258 10 H -0.271 1.271 11 H -0.282 1.282 12 C 0.542 3.458 13 O -0.597 6.597 14 C -0.175 4.175 15 C -0.061 4.061 16 C -0.140 4.140 17 C -0.044 4.044 18 C -0.183 4.183 19 C 0.122 3.878 20 O -0.330 6.330 21 C 0.078 3.922 22 C -0.157 4.157 23 C -0.138 4.138 24 C -0.086 4.086 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.031 0.969 29 H -0.003 1.003 30 H 0.269 0.731 31 H 0.148 0.852 32 H 0.176 0.824 33 H 0.172 0.828 34 H 0.113 0.887 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.117 0.883 40 H 0.126 0.874 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.258 -23.165 -1.740 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.334 5.334 3 C 0.139 3.861 4 C -0.587 4.587 5 H 0.064 0.936 6 C -0.189 4.189 7 N -0.565 5.565 8 Si 0.792 3.208 9 H -0.182 1.182 10 H -0.195 1.195 11 H -0.207 1.207 12 C 0.331 3.669 13 O -0.479 6.479 14 C -0.179 4.179 15 C -0.080 4.080 16 C -0.158 4.158 17 C -0.061 4.061 18 C -0.184 4.184 19 C 0.075 3.925 20 O -0.245 6.245 21 C 0.042 3.958 22 C -0.214 4.214 23 C -0.195 4.195 24 C -0.122 4.122 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.049 0.951 29 H 0.015 0.985 30 H 0.078 0.922 31 H 0.165 0.835 32 H 0.193 0.807 33 H 0.189 0.811 34 H 0.132 0.868 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.423 -22.768 -1.750 25.102 hybrid contribution 0.955 1.240 -0.604 1.677 sum -9.468 -21.529 -2.354 23.636 Atomic orbital electron populations 1.22096 0.77888 1.03658 1.02833 1.48101 1.08488 1.06071 1.70709 1.18790 0.91145 0.80007 0.96183 1.21621 1.37486 1.06769 0.92798 0.93640 1.25862 0.94602 0.96173 1.02294 1.70037 1.38578 1.14787 1.33088 0.85467 0.78988 0.77465 0.78894 1.18244 1.19531 1.20732 1.18924 0.86821 0.84920 0.76199 1.90690 1.16525 1.88161 1.52525 1.19339 1.02234 0.94354 1.01978 1.21354 0.91142 0.99221 0.96240 1.21409 1.01740 0.92023 1.00614 1.20939 0.93034 1.00450 0.91723 1.21153 0.99644 0.95324 1.02241 1.19791 0.88645 0.95006 0.89086 1.86964 1.51180 1.32046 1.54281 1.23272 0.96655 0.78686 0.97224 1.22190 0.97722 1.02762 0.98776 1.21884 1.01762 1.04886 0.90964 1.21935 0.92630 0.99920 0.97726 0.90087 0.91505 0.89603 0.95083 0.98500 0.92172 0.83456 0.80652 0.81079 0.86809 0.93135 0.93700 0.91979 0.92845 0.86427 0.85613 0.87418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.67 9.08 127.77 1.16 3.83 16 2 N -0.60 -29.48 2.86 -854.94 -2.44 -31.93 16 3 C 0.26 15.35 5.21 85.64 0.45 15.80 16 4 C -0.55 -34.33 9.39 25.60 0.24 -34.09 16 5 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 6 C 0.01 0.61 5.46 84.65 0.46 1.07 16 7 N -0.93 -58.45 13.29 21.45 0.28 -58.17 16 8 Si 0.97 47.43 29.54 68.60 2.03 49.46 16 9 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 12 C 0.54 27.51 7.19 86.70 0.62 28.13 16 13 O -0.60 -36.91 16.58 -3.98 -0.07 -36.97 16 14 C -0.18 -6.74 4.92 -19.93 -0.10 -6.84 16 15 C -0.06 -1.63 7.57 22.47 0.17 -1.46 16 16 C -0.14 -2.50 10.05 22.26 0.22 -2.28 16 17 C -0.04 -0.76 10.02 22.23 0.22 -0.53 16 18 C -0.18 -4.46 6.26 -19.54 -0.12 -4.58 16 19 C 0.12 4.42 6.60 23.01 0.15 4.57 16 20 O -0.33 -13.22 10.48 -91.96 -0.96 -14.19 16 21 C 0.08 2.01 1.26 -10.21 -0.01 2.00 16 22 C -0.16 -3.70 8.86 71.98 0.64 -3.06 16 23 C -0.14 -2.85 8.95 71.98 0.64 -2.21 16 24 C -0.09 -1.56 6.18 30.74 0.19 -1.37 16 25 H 0.08 2.22 7.55 -2.39 -0.02 2.20 16 26 H 0.07 2.37 8.09 -2.39 -0.02 2.35 16 27 H 0.09 2.58 5.67 -2.39 -0.01 2.56 16 28 H 0.03 1.81 8.07 -2.39 -0.02 1.79 16 29 H 0.00 -0.21 7.36 -2.39 -0.02 -0.23 16 30 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 31 H 0.15 3.44 6.53 -2.91 -0.02 3.42 16 32 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 34 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.04 1.20 8.07 -2.38 -0.02 1.19 16 37 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.13 1.41 7.92 -2.39 -0.02 1.39 16 41 H 0.11 1.61 7.93 -2.39 -0.02 1.59 16 Total: -1.00 -89.72 341.21 4.80 -84.92 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.02 Total: 7.89 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 4.94 Total: -1.02 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -2.16 Total: -90.10 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -1.03 Total: -51.16 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -89.72 4.80 -84.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594258359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.711 kcal (2) G-P(sol) polarization free energy of solvation -89.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds