Wall clock time and date at job start Tue Mar 31 2020 06:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34712 * 116.99890 * 2 1 4 4 O 1.21470 * 119.99940 * 0.02562 * 3 2 1 5 5 C 1.47741 * 119.99800 * 179.97438 * 3 2 1 6 6 C 1.39655 * 120.11783 * 0.02562 * 5 3 2 7 7 C 1.37976 * 120.00288 * 179.97438 * 6 5 3 8 8 C 1.38251 * 120.23023 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.88507 * 180.02562 * 8 7 6 10 10 C 1.38991 * 120.23357 * 0.02562 * 8 7 6 11 11 N 1.39710 * 120.00280 * 179.97438 * 10 8 7 12 12 C 1.46501 * 119.99853 * 174.95902 * 11 10 8 13 13 C 1.52999 * 109.47106 * 184.89485 * 12 11 10 14 14 C 1.50697 * 115.55247 * 80.64565 * 13 12 11 15 15 H 1.07997 * 120.00439 * 269.05137 * 14 13 12 16 16 C 1.37882 * 119.99748 * 89.06130 * 14 13 12 17 17 N 1.31517 * 119.99867 * 175.90216 * 16 14 13 18 18 Si 1.86801 * 119.99927 * 355.89474 * 16 14 13 19 19 H 1.48494 * 109.46958 * 89.75167 * 18 16 14 20 20 H 1.48500 * 109.47127 * 209.75594 * 18 16 14 21 21 H 1.48499 * 109.47127 * 329.75025 * 18 16 14 22 22 C 1.53005 * 117.49513 * 294.97930 * 13 12 11 23 23 C 1.53009 * 60.03098 * 252.49978 * 22 13 12 24 24 C 1.38670 * 119.99117 * 0.25793 * 10 8 7 25 25 H 1.08999 * 109.46844 * 299.99995 * 1 2 3 26 26 H 1.08994 * 109.46907 * 60.00179 * 1 2 3 27 27 H 1.08997 * 109.46449 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00183 * 359.95749 * 6 5 3 29 29 H 1.07998 * 119.88339 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.47193 * 272.99881 * 9 8 7 31 31 H 1.09000 * 109.46994 * 33.00334 * 9 8 7 32 32 H 1.09001 * 109.47557 * 152.99882 * 9 8 7 33 33 H 0.97003 * 120.00421 * 354.95707 * 11 10 8 34 34 H 1.08998 * 109.47267 * 64.88826 * 12 11 10 35 35 H 1.09003 * 109.46683 * 304.88746 * 12 11 10 36 36 H 0.97007 * 119.99631 * 179.97438 * 17 16 14 37 37 H 1.08998 * 117.50193 * 359.97438 * 22 13 12 38 38 H 1.08992 * 117.49770 * 144.99945 * 22 13 12 39 39 H 1.08999 * 117.49645 * 107.49941 * 23 22 13 40 40 H 1.09001 * 117.49602 * 252.52274 * 23 22 13 41 41 H 1.08000 * 120.10978 * 179.70289 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2776 0.0006 6 6 4.3020 0.1079 0.0006 7 6 5.6797 0.1829 0.0006 8 6 6.3099 1.4134 0.0000 9 6 7.8151 1.4862 -0.0005 10 6 5.5600 2.5837 0.0000 11 7 6.2018 3.8247 0.0000 12 6 5.4157 5.0559 -0.1115 13 6 6.3592 6.2563 -0.2097 14 6 6.9422 6.5147 -1.5751 15 1 7.8842 6.0662 -1.8539 16 6 6.2729 7.3242 -2.4685 17 7 6.8191 7.6150 -3.6290 18 14 4.5904 8.0074 -2.0305 19 1 4.7504 9.3129 -1.3413 20 1 3.7948 8.1961 -3.2701 21 1 3.8884 7.0560 -1.1320 22 6 7.2385 6.5648 1.0038 23 6 6.0519 7.4710 0.6696 24 6 4.1748 2.5194 0.0060 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 3.8137 -0.8554 0.0008 29 1 6.2679 -0.7229 0.0010 30 1 8.1810 1.4503 1.0256 31 1 8.2194 0.6428 -0.5602 32 1 8.1337 2.4182 -0.4674 33 1 7.1679 3.8711 0.0739 34 1 4.7816 5.1631 0.7686 35 1 4.7926 5.0094 -1.0047 36 1 6.3480 8.1842 -4.2576 37 1 7.1445 5.9129 1.8723 38 1 8.2385 6.9547 0.8145 39 1 5.1775 7.4150 1.3180 40 1 6.2714 8.4571 0.2600 41 1 3.5903 3.4275 0.0108 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594701583.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:26 Heat of formation + Delta-G solvation = -34.840670 kcal Electronic energy + Delta-G solvation = -22687.044860 eV Core-core repulsion = 19339.689573 eV Total energy + Delta-G solvation = -3347.355287 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.50753 -39.23600 -37.35124 -36.40307 -34.49460 -32.66209 -32.13763 -29.36874 -28.50229 -26.91781 -26.23054 -25.03674 -22.74086 -21.85153 -21.44709 -20.54212 -19.06242 -17.95807 -17.17230 -16.54529 -16.34851 -15.77674 -15.19282 -14.99343 -14.94970 -14.08075 -14.05272 -13.69171 -13.39157 -13.35767 -13.24653 -13.07484 -12.67605 -12.36976 -12.20230 -12.09084 -11.72418 -11.41204 -11.19553 -11.05055 -10.86624 -10.78417 -10.53914 -10.44146 -10.19550 -9.85257 -9.70344 -9.06903 -8.69954 -8.65788 -8.64238 -7.00570 -6.17404 -4.21444 0.86556 1.75516 2.66368 2.68647 3.26422 3.37100 3.40578 3.86551 4.01310 4.37425 4.74389 4.87458 4.95439 4.98330 5.05866 5.10095 5.12687 5.29993 5.36303 5.49262 5.60232 5.71613 5.73576 5.79900 5.94979 5.99341 6.03776 6.13772 6.16461 6.25764 6.32687 6.39071 6.47310 6.52915 6.64228 6.64588 6.94958 7.01423 7.04774 7.65102 7.72906 7.79504 8.21861 8.40231 8.83821 9.45333 10.94185 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015018 B = 0.004829 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.007004 B = 5796.551505 C = 6846.649178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.509 3.491 4 O -0.506 6.506 5 C -0.087 4.087 6 C -0.133 4.133 7 C -0.087 4.087 8 C -0.135 4.135 9 C -0.111 4.111 10 C 0.221 3.779 11 N -0.719 5.719 12 C 0.154 3.846 13 C -0.012 4.012 14 C -0.489 4.489 15 H 0.077 0.923 16 C 0.080 3.920 17 N -0.895 5.895 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.293 1.293 21 H -0.260 1.260 22 C -0.179 4.179 23 C -0.193 4.193 24 C -0.136 4.136 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.404 0.596 34 H 0.037 0.963 35 H 0.064 0.936 36 H 0.266 0.734 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.471 -15.393 9.001 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.354 3.646 4 O -0.395 6.395 5 C -0.089 4.089 6 C -0.153 4.153 7 C -0.105 4.105 8 C -0.140 4.140 9 C -0.168 4.168 10 C 0.113 3.887 11 N -0.346 5.346 12 C 0.030 3.970 13 C -0.013 4.013 14 C -0.527 4.527 15 H 0.095 0.905 16 C -0.123 4.123 17 N -0.531 5.531 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.220 1.220 21 H -0.184 1.184 22 C -0.216 4.216 23 C -0.231 4.231 24 C -0.160 4.160 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.146 0.854 29 H 0.143 0.857 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.241 0.759 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.840 -14.774 8.791 18.156 hybrid contribution -0.889 0.646 0.054 1.100 sum -6.729 -14.128 8.845 17.976 Atomic orbital electron populations 1.23248 0.76410 1.03493 1.02610 1.86551 1.23202 1.32925 1.84562 1.21407 0.89446 0.81195 0.72515 1.90836 1.66893 1.36060 1.45693 1.18672 0.88022 0.94594 1.07573 1.20992 0.93667 0.97116 1.03570 1.20669 0.93919 0.96491 0.99449 1.19638 0.96016 0.91820 1.06534 1.20685 0.91053 1.03080 1.02004 1.17559 0.90975 0.86314 0.93814 1.44924 1.09347 1.01936 1.78359 1.21330 0.93391 0.83145 0.99098 1.19589 0.97232 0.91739 0.92782 1.20191 1.07830 1.30182 0.94463 0.90461 1.24970 0.97520 0.95243 0.94613 1.69892 1.38302 1.36717 1.08228 0.86848 0.84642 0.80057 0.77757 1.20307 1.21979 1.18389 1.22811 0.95711 1.03671 0.99412 1.22986 0.98920 0.96714 1.04463 1.20683 0.92783 0.97151 1.05362 0.91948 0.91883 0.88141 0.85366 0.85675 0.91423 0.91373 0.91296 0.75929 0.94462 0.91795 0.92453 0.90870 0.89379 0.90748 0.89106 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.53 9.81 -40.53 -0.40 -4.93 16 3 C 0.51 7.94 7.90 34.61 0.27 8.21 16 4 O -0.51 -9.22 16.13 -19.24 -0.31 -9.53 16 5 C -0.09 -1.34 5.87 -105.01 -0.62 -1.96 16 6 C -0.13 -1.72 9.61 -39.15 -0.38 -2.10 16 7 C -0.09 -1.06 9.68 -39.67 -0.38 -1.45 16 8 C -0.13 -1.88 5.90 -104.34 -0.62 -2.49 16 9 C -0.11 -1.30 9.60 36.01 0.35 -0.95 16 10 C 0.22 3.65 6.62 -83.83 -0.56 3.09 16 11 N -0.72 -12.70 5.56 -58.67 -0.33 -13.03 16 12 C 0.15 3.11 4.15 -4.04 -0.02 3.09 16 13 C -0.01 -0.26 0.83 -155.62 -0.13 -0.39 16 14 C -0.49 -12.98 9.41 -34.44 -0.32 -13.31 16 15 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 16 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 17 N -0.89 -26.65 13.96 55.43 0.77 -25.87 16 18 Si 0.88 21.44 24.87 -169.99 -4.23 17.21 16 19 H -0.28 -6.60 7.10 56.52 0.40 -6.20 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 21 H -0.26 -6.04 6.16 56.52 0.35 -5.70 16 22 C -0.18 -3.39 9.82 -26.72 -0.26 -3.65 16 23 C -0.19 -3.94 7.59 -26.69 -0.20 -4.14 16 24 C -0.14 -2.34 8.84 -38.95 -0.34 -2.68 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.13 1.39 7.60 -52.49 -0.40 0.99 16 29 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.07 0.88 6.45 -51.93 -0.34 0.55 16 33 H 0.40 6.79 6.38 -40.82 -0.26 6.53 16 34 H 0.04 0.71 7.78 -51.93 -0.40 0.31 16 35 H 0.06 1.42 7.14 -51.93 -0.37 1.05 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 39 H 0.07 1.38 8.08 -51.93 -0.42 0.96 16 40 H 0.09 1.96 7.22 -51.93 -0.37 1.58 16 41 H 0.13 2.48 6.34 -52.49 -0.33 2.15 16 LS Contribution 340.93 15.07 5.14 5.14 Total: -1.00 -30.59 340.93 -7.48 -38.07 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -5.89 Total: 8.14 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -2.24 Total: -15.20 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.45 Total: -38.90 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.71 Total: -14.46 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.23 Total: 17.21 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.59 -7.48 -38.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594701583.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.226 kcal (2) G-P(sol) polarization free energy of solvation -30.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds