Wall clock time and date at job start Tue Mar 31 2020 06:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34712 * 116.99890 * 2 1 4 4 O 1.21470 * 119.99940 * 0.02562 * 3 2 1 5 5 C 1.47741 * 119.99800 * 179.97438 * 3 2 1 6 6 C 1.39655 * 120.11783 * 0.02562 * 5 3 2 7 7 C 1.37976 * 120.00288 * 179.97438 * 6 5 3 8 8 C 1.38251 * 120.23023 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.88507 * 180.02562 * 8 7 6 10 10 C 1.38991 * 120.23357 * 0.02562 * 8 7 6 11 11 N 1.39710 * 120.00280 * 179.97438 * 10 8 7 12 12 C 1.46501 * 119.99853 * 174.95902 * 11 10 8 13 13 C 1.52999 * 109.47106 * 184.89485 * 12 11 10 14 14 C 1.50697 * 115.55247 * 80.64565 * 13 12 11 15 15 H 1.07997 * 120.00439 * 269.05137 * 14 13 12 16 16 C 1.37882 * 119.99748 * 89.06130 * 14 13 12 17 17 N 1.31517 * 119.99867 * 175.90216 * 16 14 13 18 18 Si 1.86801 * 119.99927 * 355.89474 * 16 14 13 19 19 H 1.48494 * 109.46958 * 89.75167 * 18 16 14 20 20 H 1.48500 * 109.47127 * 209.75594 * 18 16 14 21 21 H 1.48499 * 109.47127 * 329.75025 * 18 16 14 22 22 C 1.53005 * 117.49513 * 294.97930 * 13 12 11 23 23 C 1.53009 * 60.03098 * 252.49978 * 22 13 12 24 24 C 1.38670 * 119.99117 * 0.25793 * 10 8 7 25 25 H 1.08999 * 109.46844 * 299.99995 * 1 2 3 26 26 H 1.08994 * 109.46907 * 60.00179 * 1 2 3 27 27 H 1.08997 * 109.46449 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.00183 * 359.95749 * 6 5 3 29 29 H 1.07998 * 119.88339 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.47193 * 272.99881 * 9 8 7 31 31 H 1.09000 * 109.46994 * 33.00334 * 9 8 7 32 32 H 1.09001 * 109.47557 * 152.99882 * 9 8 7 33 33 H 0.97003 * 120.00421 * 354.95707 * 11 10 8 34 34 H 1.08998 * 109.47267 * 64.88826 * 12 11 10 35 35 H 1.09003 * 109.46683 * 304.88746 * 12 11 10 36 36 H 0.97007 * 119.99631 * 179.97438 * 17 16 14 37 37 H 1.08998 * 117.50193 * 359.97438 * 22 13 12 38 38 H 1.08992 * 117.49770 * 144.99945 * 22 13 12 39 39 H 1.08999 * 117.49645 * 107.49941 * 23 22 13 40 40 H 1.09001 * 117.49602 * 252.52274 * 23 22 13 41 41 H 1.08000 * 120.10978 * 179.70289 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2776 0.0006 6 6 4.3020 0.1079 0.0006 7 6 5.6797 0.1829 0.0006 8 6 6.3099 1.4134 0.0000 9 6 7.8151 1.4862 -0.0005 10 6 5.5600 2.5837 0.0000 11 7 6.2018 3.8247 0.0000 12 6 5.4157 5.0559 -0.1115 13 6 6.3592 6.2563 -0.2097 14 6 6.9422 6.5147 -1.5751 15 1 7.8842 6.0662 -1.8539 16 6 6.2729 7.3242 -2.4685 17 7 6.8191 7.6150 -3.6290 18 14 4.5904 8.0074 -2.0305 19 1 4.7504 9.3129 -1.3413 20 1 3.7948 8.1961 -3.2701 21 1 3.8884 7.0560 -1.1320 22 6 7.2385 6.5648 1.0038 23 6 6.0519 7.4710 0.6696 24 6 4.1748 2.5194 0.0060 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 3.8137 -0.8554 0.0008 29 1 6.2679 -0.7229 0.0010 30 1 8.1810 1.4503 1.0256 31 1 8.2194 0.6428 -0.5602 32 1 8.1337 2.4182 -0.4674 33 1 7.1679 3.8711 0.0739 34 1 4.7816 5.1631 0.7686 35 1 4.7926 5.0094 -1.0047 36 1 6.3480 8.1842 -4.2576 37 1 7.1445 5.9129 1.8723 38 1 8.2385 6.9547 0.8145 39 1 5.1775 7.4150 1.3180 40 1 6.2714 8.4571 0.2600 41 1 3.5903 3.4275 0.0108 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594701583.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:25 Heat of formation + Delta-G solvation = -52.951887 kcal Electronic energy + Delta-G solvation = -22687.830221 eV Core-core repulsion = 19339.689573 eV Total energy + Delta-G solvation = -3348.140648 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.64456 -40.42210 -38.92967 -37.52759 -35.81426 -34.25844 -33.75009 -30.60945 -29.43253 -28.29714 -27.61460 -26.69517 -23.82867 -23.40106 -22.70073 -21.71367 -20.79613 -19.15465 -18.55345 -18.11179 -17.40676 -17.17406 -16.84636 -16.29030 -16.16385 -15.58793 -15.31472 -14.84144 -14.80146 -14.63596 -14.48621 -14.39006 -14.26002 -13.78362 -13.28532 -13.11864 -12.97754 -12.90352 -12.70090 -12.47425 -12.22456 -12.05793 -11.99105 -11.84484 -11.65342 -11.61088 -11.21730 -10.79442 -10.68008 -10.40738 -9.79078 -8.33525 -8.28090 -6.39218 -0.28813 0.63920 1.30177 1.36108 1.45862 1.52110 1.64953 2.32453 2.50632 2.88208 3.01995 3.26715 3.71311 3.91021 3.99239 4.07051 4.26076 4.31727 4.32070 4.32603 4.36482 4.42275 4.49216 4.55959 4.67813 4.78533 4.80495 4.83003 4.87902 4.93053 5.05482 5.14449 5.28520 5.33271 5.34071 5.42424 5.45905 5.56025 5.67041 5.89333 6.24352 6.39766 6.65360 6.68229 6.93407 7.30456 8.81883 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015018 B = 0.004829 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.007004 B = 5796.551505 C = 6846.649178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.510 3.490 4 O -0.544 6.544 5 C -0.106 4.106 6 C -0.115 4.115 7 C -0.080 4.080 8 C -0.129 4.129 9 C -0.111 4.111 10 C 0.197 3.803 11 N -0.725 5.725 12 C 0.170 3.830 13 C -0.037 4.037 14 C -0.480 4.480 15 H 0.038 0.962 16 C 0.026 3.974 17 N -0.946 5.946 18 Si 0.931 3.069 19 H -0.263 1.263 20 H -0.301 1.301 21 H -0.244 1.244 22 C -0.152 4.152 23 C -0.193 4.193 24 C -0.160 4.160 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.141 0.859 28 H 0.157 0.843 29 H 0.167 0.833 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.406 0.594 34 H 0.049 0.951 35 H 0.032 0.968 36 H 0.265 0.735 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.843 -18.132 11.117 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.357 3.643 4 O -0.436 6.436 5 C -0.107 4.107 6 C -0.135 4.135 7 C -0.098 4.098 8 C -0.134 4.134 9 C -0.167 4.167 10 C 0.091 3.909 11 N -0.354 5.354 12 C 0.045 3.955 13 C -0.038 4.038 14 C -0.518 4.518 15 H 0.057 0.943 16 C -0.172 4.172 17 N -0.585 5.585 18 Si 0.757 3.243 19 H -0.189 1.189 20 H -0.229 1.229 21 H -0.168 1.168 22 C -0.189 4.189 23 C -0.230 4.230 24 C -0.183 4.183 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.159 0.841 28 H 0.174 0.826 29 H 0.185 0.815 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.243 0.757 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.214 -17.566 10.938 21.606 hybrid contribution -0.724 1.295 -0.606 1.602 sum -6.938 -16.272 10.333 20.486 Atomic orbital electron populations 1.23612 0.74387 1.06077 1.02443 1.86531 1.25128 1.31136 1.83814 1.21529 0.89634 0.81470 0.71656 1.90812 1.67666 1.37418 1.47671 1.18812 0.88331 0.94947 1.08639 1.21368 0.94051 0.97204 1.00850 1.21133 0.93882 0.97225 0.97540 1.20027 0.97241 0.91487 1.04672 1.20750 0.89406 1.03161 1.03403 1.17764 0.90982 0.86696 0.95418 1.44724 1.09159 1.01705 1.79821 1.20916 0.92837 0.83618 0.98150 1.19429 0.99483 0.93536 0.91335 1.20376 1.06162 1.28482 0.96753 0.94335 1.25716 1.00911 0.96091 0.94511 1.70027 1.40108 1.38679 1.09723 0.85993 0.80638 0.80217 0.77482 1.18852 1.22887 1.16762 1.22822 0.94917 1.02632 0.98504 1.23042 1.00598 0.95383 1.04024 1.20600 0.93168 0.97147 1.07413 0.91974 0.92326 0.84124 0.82577 0.81535 0.89523 0.89060 0.93055 0.75660 0.93257 0.95010 0.92621 0.87766 0.89800 0.88257 0.90488 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.35 -8.26 9.81 -56.22 -0.55 -8.81 16 3 C 0.51 15.69 7.90 70.33 0.56 16.24 16 4 O -0.54 -20.26 16.13 19.93 0.32 -19.94 16 5 C -0.11 -3.17 5.87 -20.12 -0.12 -3.29 16 6 C -0.11 -2.60 9.61 22.55 0.22 -2.38 16 7 C -0.08 -1.63 9.68 22.21 0.22 -1.41 16 8 C -0.13 -3.29 5.90 -19.68 -0.12 -3.41 16 9 C -0.11 -2.26 9.60 71.24 0.68 -1.58 16 10 C 0.20 6.40 6.62 38.17 0.25 6.66 16 11 N -0.73 -25.65 5.56 -339.52 -1.89 -27.53 16 12 C 0.17 6.89 4.15 86.38 0.36 7.25 16 13 C -0.04 -1.59 0.83 -52.90 -0.04 -1.64 16 14 C -0.48 -26.33 9.41 25.60 0.24 -26.08 16 15 H 0.04 2.35 8.06 -2.91 -0.02 2.32 16 16 C 0.03 1.47 5.47 84.66 0.46 1.93 16 17 N -0.95 -58.77 13.96 21.45 0.30 -58.47 16 18 Si 0.93 45.09 24.87 68.60 1.71 46.80 16 19 H -0.26 -12.08 7.10 99.48 0.71 -11.37 16 20 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 21 H -0.24 -11.12 6.16 99.48 0.61 -10.51 16 22 C -0.15 -5.49 9.82 30.60 0.30 -5.19 16 23 C -0.19 -7.55 7.59 30.62 0.23 -7.31 16 24 C -0.16 -5.54 8.84 22.68 0.20 -5.34 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.16 2.67 7.60 -2.91 -0.02 2.65 16 29 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 1.45 8.10 -2.39 -0.02 1.43 16 32 H 0.05 1.25 6.45 -2.39 -0.02 1.23 16 33 H 0.41 13.59 6.38 -92.71 -0.59 13.00 16 34 H 0.05 1.86 7.78 -2.39 -0.02 1.84 16 35 H 0.03 1.47 7.14 -2.39 -0.02 1.45 16 36 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 37 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.10 3.41 8.08 -2.39 -0.02 3.39 16 40 H 0.08 3.23 7.22 -2.39 -0.02 3.22 16 41 H 0.11 4.24 6.34 -2.91 -0.02 4.23 16 Total: -1.00 -70.26 340.93 4.88 -65.38 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.35 Total: 26.48 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 4.64 Total: -23.90 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -1.59 Total: -86.01 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.23 Total: -28.75 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.71 Total: 46.80 kcal Total: -70.26 4.88 -65.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594701583.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.428 kcal (2) G-P(sol) polarization free energy of solvation -70.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds