Wall clock time and date at job start Tue Mar 31 2020 06:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34707 * 116.99618 * 2 1 4 4 O 1.21468 * 120.00815 * 0.02562 * 3 2 1 5 5 C 1.47749 * 119.99425 * 180.02562 * 3 2 1 6 6 C 1.39545 * 120.11631 * 5.78544 * 5 3 2 7 7 C 1.38626 * 119.76877 * 180.27186 * 6 5 3 8 8 N 1.39706 * 120.00453 * 179.72945 * 7 6 5 9 9 C 1.46496 * 120.00217 * 179.72531 * 8 7 6 10 10 C 1.53007 * 109.47295 * 184.65794 * 9 8 7 11 11 C 1.50697 * 115.55042 * 302.33751 * 10 9 8 12 12 H 1.07997 * 120.00218 * 86.24656 * 11 10 9 13 13 C 1.37885 * 120.00145 * 266.24760 * 11 10 9 14 14 N 1.31512 * 119.99332 * 5.56349 * 13 11 10 15 15 Si 1.86797 * 120.00218 * 185.56054 * 13 11 10 16 16 H 1.48499 * 109.46944 * 89.99763 * 15 13 11 17 17 H 1.48491 * 109.47249 * 209.99835 * 15 13 11 18 18 H 1.48499 * 109.47105 * 330.00141 * 15 13 11 19 19 C 1.52992 * 117.49595 * 88.00254 * 10 9 8 20 20 C 1.52997 * 117.49938 * 156.66583 * 10 9 8 21 21 C 1.39029 * 119.99456 * 359.45713 * 7 6 5 22 22 C 1.38213 * 120.23250 * 0.27634 * 21 7 6 23 23 C 1.38012 * 120.23467 * 359.97438 * 22 21 7 24 24 C 1.50698 * 120.00402 * 180.02562 * 23 22 21 25 25 H 1.08997 * 109.47509 * 59.99502 * 1 2 3 26 26 H 1.08999 * 109.47150 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46760 * 299.99454 * 1 2 3 28 28 H 1.08002 * 120.11462 * 0.02835 * 6 5 3 29 29 H 0.97008 * 120.00063 * 359.72760 * 8 7 6 30 30 H 1.09001 * 109.46763 * 64.66119 * 9 8 7 31 31 H 1.08997 * 109.47645 * 304.66533 * 9 8 7 32 32 H 0.97007 * 119.99728 * 174.99817 * 14 13 11 33 33 H 1.09001 * 117.50292 * 215.00161 * 19 10 9 34 34 H 1.09005 * 117.50361 * 0.02562 * 19 10 9 35 35 H 1.09005 * 117.49740 * 359.97251 * 20 10 9 36 36 H 1.08996 * 117.50084 * 144.97808 * 20 10 9 37 37 H 1.08003 * 119.88762 * 180.29304 * 21 7 6 38 38 H 1.07998 * 119.88279 * 180.02562 * 22 21 7 39 39 H 1.09002 * 109.47179 * 96.56374 * 24 23 22 40 40 H 1.08996 * 109.47246 * 216.56877 * 24 23 22 41 41 H 1.09004 * 109.47038 * 336.56793 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5390 1.2776 -0.0006 6 6 4.3010 0.1149 -0.1228 7 6 5.6849 0.1952 -0.1168 8 7 6.4526 -0.9662 -0.2332 9 6 7.9150 -0.8807 -0.2329 10 6 8.5071 -2.2684 -0.4878 11 6 8.0997 -3.3388 0.4915 12 1 7.1875 -3.8952 0.3349 13 6 8.8917 -3.6079 1.5877 14 7 9.9433 -2.8592 1.8388 15 14 8.4709 -5.0359 2.7161 16 1 9.1512 -6.2647 2.2341 17 1 8.9252 -4.7272 4.0957 18 1 7.0015 -5.2510 2.7153 19 6 8.7231 -2.6877 -1.9432 20 6 9.9240 -2.3375 -1.0609 21 6 6.3089 1.4322 -0.0007 22 6 5.5541 2.5842 0.1148 23 6 4.1757 2.5149 0.1151 24 6 3.3578 3.7743 0.2407 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 3.8142 -0.8445 -0.2178 29 1 6.0172 -1.8293 -0.3142 30 1 8.2572 -0.5118 0.7341 31 1 8.2393 -0.1975 -1.0178 32 1 10.4584 -3.0022 2.6483 33 1 8.5707 -3.7378 -2.1924 34 1 8.4439 -1.9749 -2.7192 35 1 10.4342 -1.3943 -1.2568 36 1 10.5617 -3.1569 -0.7294 37 1 7.3872 1.4932 -0.0010 38 1 6.0446 3.5422 0.2043 39 1 3.0568 4.1125 -0.7508 40 1 2.4705 3.5730 0.8409 41 1 3.9546 4.5486 0.7229 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594702623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:16 Heat of formation + Delta-G solvation = -36.322428 kcal Electronic energy + Delta-G solvation = -22438.344628 eV Core-core repulsion = 19090.925087 eV Total energy + Delta-G solvation = -3347.419541 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -40.57133 -38.94337 -37.11039 -36.42015 -34.54079 -32.01152 -31.38355 -30.73705 -27.97637 -26.84111 -25.54783 -24.39790 -23.57751 -21.70244 -21.15468 -20.11158 -19.32403 -17.65700 -17.06461 -16.38737 -16.29282 -15.55797 -15.37121 -14.74313 -14.72769 -14.08672 -13.89514 -13.62219 -13.55936 -13.25489 -12.96439 -12.85210 -12.61306 -12.17718 -11.99058 -11.69984 -11.59411 -11.41916 -11.09304 -11.03637 -10.95323 -10.80924 -10.56694 -10.27874 -9.97284 -9.61608 -9.52566 -8.94719 -8.79685 -8.50920 -8.24364 -6.81054 -6.13646 -4.22338 0.95136 1.82242 2.71955 2.76157 3.22508 3.30552 3.32598 4.04846 4.10024 4.31817 4.81658 5.00591 5.06522 5.08095 5.12389 5.24113 5.31156 5.37756 5.46816 5.61540 5.79068 5.90024 5.92708 5.96843 6.09319 6.19088 6.26250 6.33371 6.37866 6.45519 6.54628 6.64319 6.65519 6.73256 6.82484 7.04769 7.06689 7.31765 7.47035 7.75415 7.81053 7.96001 8.28866 8.42310 8.78758 9.44890 10.93634 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017357 B = 0.003942 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.837045 B = 7101.867014 C = 7841.371136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.510 3.490 4 O -0.507 6.507 5 C -0.085 4.085 6 C -0.150 4.150 7 C 0.217 3.783 8 N -0.716 5.716 9 C 0.165 3.835 10 C 0.024 3.976 11 C -0.498 4.498 12 H 0.059 0.941 13 C 0.075 3.925 14 N -0.876 5.876 15 Si 0.890 3.110 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.212 4.212 20 C -0.139 4.139 21 C -0.165 4.165 22 C -0.082 4.082 23 C -0.099 4.099 24 C -0.109 4.109 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.061 0.939 28 H 0.132 0.868 29 H 0.404 0.596 30 H 0.060 0.940 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.487 7.951 -3.692 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.357 3.643 4 O -0.397 6.397 5 C -0.087 4.087 6 C -0.173 4.173 7 C 0.109 3.891 8 N -0.340 5.340 9 C 0.041 3.959 10 C 0.024 3.976 11 C -0.536 4.536 12 H 0.077 0.923 13 C -0.129 4.129 14 N -0.512 5.512 15 Si 0.718 3.282 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.250 4.250 20 C -0.177 4.177 21 C -0.188 4.188 22 C -0.101 4.101 23 C -0.102 4.102 24 C -0.165 4.165 25 H 0.080 0.920 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.150 0.850 29 H 0.240 0.760 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.269 8.199 -3.586 14.390 hybrid contribution -0.359 -1.133 0.694 1.377 sum -11.628 7.066 -2.892 13.911 Atomic orbital electron populations 1.23237 0.76495 1.03588 1.02355 1.86601 1.23127 1.33004 1.84310 1.21421 0.89408 0.81097 0.72382 1.90754 1.67137 1.35502 1.46310 1.18524 0.87805 0.94227 1.08112 1.20775 0.91932 0.98031 1.06599 1.17857 0.90190 0.88007 0.93083 1.44934 1.06120 1.05531 1.77460 1.21016 0.78043 0.97644 0.99230 1.18979 0.95823 0.92462 0.90376 1.20315 1.07705 1.17791 1.07777 0.92265 1.24969 0.94409 0.96047 0.97520 1.69981 1.17345 1.38587 1.25326 0.86630 0.78773 0.82830 0.79958 1.20613 1.21225 1.19841 1.23091 1.06585 1.00082 0.95205 1.22424 0.91621 1.00808 1.02896 1.20944 1.00351 0.91086 1.06425 1.20666 0.92257 0.97966 0.99223 1.19564 0.93763 0.93539 1.03327 1.20904 0.99675 0.93561 1.02352 0.92000 0.88166 0.91999 0.85023 0.75989 0.92156 0.94907 0.92867 0.90441 0.91779 0.91889 0.89441 0.85478 0.85706 0.91774 0.89860 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.35 -4.74 9.83 -40.51 -0.40 -5.14 16 3 C 0.51 7.61 7.83 34.62 0.27 7.88 16 4 O -0.51 -7.94 13.10 -19.24 -0.25 -8.19 16 5 C -0.08 -1.31 5.87 -105.00 -0.62 -1.92 16 6 C -0.15 -2.36 9.46 -38.95 -0.37 -2.73 16 7 C 0.22 3.65 6.65 -83.83 -0.56 3.09 16 8 N -0.72 -13.17 5.61 -58.67 -0.33 -13.50 16 9 C 0.16 3.33 4.82 -4.04 -0.02 3.31 16 10 C 0.02 0.55 1.65 -155.66 -0.26 0.29 16 11 C -0.50 -12.50 8.28 -34.44 -0.29 -12.79 16 12 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 13 C 0.07 1.93 5.36 -17.82 -0.10 1.83 16 14 N -0.88 -23.50 12.37 55.43 0.69 -22.82 16 15 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 19 C -0.21 -4.34 9.94 -26.70 -0.27 -4.61 16 20 C -0.14 -3.09 8.97 -26.69 -0.24 -3.33 16 21 C -0.16 -2.57 9.28 -39.30 -0.36 -2.94 16 22 C -0.08 -1.15 9.65 -39.67 -0.38 -1.53 16 23 C -0.10 -1.44 5.92 -104.19 -0.62 -2.06 16 24 C -0.11 -1.39 8.74 36.00 0.31 -1.08 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.13 1.95 7.62 -52.49 -0.40 1.55 16 29 H 0.40 7.47 8.07 -40.82 -0.33 7.14 16 30 H 0.06 1.35 8.11 -51.93 -0.42 0.93 16 31 H 0.03 0.62 7.67 -51.93 -0.40 0.22 16 32 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.09 2.12 7.97 -51.93 -0.41 1.70 16 37 H 0.13 1.94 6.70 -52.48 -0.35 1.59 16 38 H 0.13 1.41 8.05 -52.49 -0.42 0.99 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.16 5.82 -51.93 -0.30 0.86 16 41 H 0.05 0.58 8.04 -51.93 -0.42 0.16 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -27.38 345.94 -8.48 -35.86 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.96 Total: 8.44 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -2.42 Total: -15.14 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.36 Total: -36.31 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.65 Total: -13.33 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.38 -8.48 -35.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594702623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.459 kcal (2) G-P(sol) polarization free energy of solvation -27.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds